10 20 30 40 50 60 70 80 1GX2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 26-MAR-02 1GX2
TITLE RECOMBINANT HORSERADISH PEROXIDASE PHE209SER COMPLEX WITH TITLE 2 BENZHYDROXAMIC ACID
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE C1A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARMORACIA RUSTICANA; SOURCE 3 ORGANISM_COMMON: HORSERADISH; SOURCE 4 ORGANISM_TAXID: 3704; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: SYNTHETIC GENE
KEYWDS OXIDOREDUCTASE, PEROXIDASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.MENO,M.GAJHEDE,A.HENRIKSEN
REVDAT 2 24-FEB-09 1GX2 1 VERSN REVDAT 1 28-MAR-03 1GX2 0
JRNL AUTH A.HENRIKSEN,N.BRISSETT,K.MENO,O.MIRZA,M.GAJHEDE JRNL TITL HRPC HEME CREVICE ARCHITECTURE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HENRIKSEN,A.T.SMITH,M.GAJHEDE REMARK 1 TITL THE STRUCTURES OF THE HORSERADISH PEROXIDASE REMARK 1 TITL 2 C-FERULIC ACID COMPLEX AND THE TERNARY COMPLEX REMARK 1 TITL 3 WITH CYANIDE SUGGEST HOW PEROXIDASES OXIDIZE SMALL REMARK 1 TITL 4 PHENOLIC SUBSTRATES REMARK 1 REF J.BIOL.CHEM. V. 274 35005 1999 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10574977 REMARK 1 DOI 10.1074/JBC.274.49.35005 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.HENRIKSEN,D.J.SCHULLER,K.MENO,K.G.WELINDER, REMARK 1 AUTH 2 A.T.SMITH,M.GAJHEDE REMARK 1 TITL STRUCTURAL INTERACTIONS BETWEEN HORSERADISH REMARK 1 TITL 2 PEROXIDASE C AND THE SUBSTRATE BENZHYDROXAMIC ACID REMARK 1 TITL 3 DETERMINED BY X-RAY CRYSTALLOGRAPHY REMARK 1 REF BIOCHEMISTRY V. 37 8054 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9609699 REMARK 1 DOI 10.1021/BI980234J REMARK 1 REFERENCE 3 REMARK 1 AUTH M.GAJHEDE,D.J.SCHULLER,A.HENRIKSEN,A.T.SMITH, REMARK 1 AUTH 2 T.L.POULOS REMARK 1 TITL CRYSTAL STRUCTURE OF HORSERADISH PEROXIDASE C AT REMARK 1 TITL 2 2.15 A RESOLUTION REMARK 1 REF NAT.STRUCT.BIOL. V. 51 1032 1997 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 9406554 REMARK 1 DOI 10.1038/NSB1297-1032
REMARK 2 REMARK 2 RESOLUTION. 2.2 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 12108.00 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 33937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.9 REMARK 3 FREE R VALUE TEST SET COUNT : 3375 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4798 REMARK 3 BIN R VALUE (WORKING SET) : 0.229 REMARK 3 BIN FREE R VALUE : 0.252 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.9 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 530 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 4.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49 REMARK 3 B22 (A**2) : -0.38 REMARK 3 B33 (A**2) : -0.10 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.28 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.1 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.09 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.21 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.93 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.20 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.24 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.339209 REMARK 3 BSOL : 47.4833 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GX2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAR-02. REMARK 100 THE PDBE ID CODE IS EBI-9617.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-97 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ATJ REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.14900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION: RESIDUE PHE (179) SER
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 308 CA C O CB OG REMARK 470 SER B 308 CA C O CB OG
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 69.12 -155.51 REMARK 500 SER A 73 -55.46 -152.85 REMARK 500 THR A 94 -52.56 -122.68 REMARK 500 ASN A 186 77.59 -156.68 REMARK 500 THR A 288 63.52 22.28 REMARK 500 CYS B 11 69.12 -155.46 REMARK 500 SER B 73 -55.39 -152.85 REMARK 500 THR B 94 -52.54 -122.63 REMARK 500 ASN B 186 77.62 -156.67 REMARK 500 THR B 288 63.58 22.24 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 171 OG1 REMARK 620 2 ASP A 230 OD2 67.9 REMARK 620 3 ASP A 222 OD1 91.9 101.2 REMARK 620 4 THR A 171 O 70.9 137.2 91.2 REMARK 620 5 THR A 225 O 154.1 137.8 86.0 83.3 REMARK 620 6 THR A 225 OG1 137.0 72.6 79.5 150.2 67.9 REMARK 620 7 ILE A 228 O 89.9 80.6 177.8 88.1 91.8 100.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 48 O REMARK 620 2 VAL A 46 O 81.8 REMARK 620 3 ASP A 43 O 71.1 84.7 REMARK 620 4 ASP A 43 OD1 89.9 162.4 77.9 REMARK 620 5 ASP A 50 OD1 74.3 112.6 138.4 79.6 REMARK 620 6 SER A 52 OG 145.4 96.6 143.4 99.0 74.6 REMARK 620 7 HOH A2040 O 144.2 95.1 73.1 82.5 137.2 70.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1310 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 171 O REMARK 620 2 THR B 225 O 83.3 REMARK 620 3 THR B 225 OG1 150.2 67.9 REMARK 620 4 ILE B 228 O 88.1 91.9 100.1 REMARK 620 5 ASP B 230 OD2 137.2 137.8 72.7 80.6 REMARK 620 6 ASP B 222 OD1 91.2 86.0 79.5 177.8 101.2 REMARK 620 7 THR B 171 OG1 70.9 154.1 137.0 89.9 67.9 91.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 46 O REMARK 620 2 ASP B 50 OD1 112.6 REMARK 620 3 SER B 52 OG 96.6 74.6 REMARK 620 4 HOH B2040 O 95.1 137.2 70.4 REMARK 620 5 ASP B 43 O 84.7 138.4 143.4 73.1 REMARK 620 6 ASP B 43 OD1 162.4 79.6 99.0 82.5 77.9 REMARK 620 7 GLY B 48 O 81.8 74.3 145.4 144.2 71.1 89.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEM A1308 NB REMARK 620 2 HEM A1308 NC 90.2 REMARK 620 3 HOH A2185 O 87.7 93.2 REMARK 620 4 HIS A 170 NE2 92.1 94.5 172.3 REMARK 620 5 HEM A1308 NA 90.3 169.9 76.8 95.6 REMARK 620 6 HEM A1308 ND 175.1 89.2 87.5 92.7 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2187 O REMARK 620 2 HIS B 170 NE2 172.3 REMARK 620 3 HEM B1308 NA 76.8 95.6 REMARK 620 4 HEM B1308 NB 87.6 92.2 90.3 REMARK 620 5 HEM B1308 NC 93.2 94.5 169.9 90.2 REMARK 620 6 HEM B1308 ND 87.5 92.7 89.5 175.1 89.2 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BHO A1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BHO B1309
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1GW2 RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A THR171SER REMARK 900 IN COMPLEX WITH FERULIC ACID REMARK 900 RELATED ID: 1GWO RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLN REMARK 900 RELATED ID: 1GWT RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A PHE221MET REMARK 900 RELATED ID: 1GWU RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLY REMARK 900 RELATED ID: 1H55 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND II REMARK 900 RELATED ID: 1H57 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 RELATED ID: 1H58 RELATED DB: PDB REMARK 900 STRUCTURE OF FERROUS HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1H5A RELATED DB: PDB REMARK 900 STRUCTURE OF FERRIC HORSERADISH PEROXIDASE C1A REMARK 900 IN COMPLEX WITH ACETATE REMARK 900 RELATED ID: 1H5C RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (100-200% DOSE) REMARK 900 RELATED ID: 1H5D RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (0-11% DOSE) REMARK 900 RELATED ID: 1H5E RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (11-22% DOSE) REMARK 900 RELATED ID: 1H5F RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (22-33% DOSE) REMARK 900 RELATED ID: 1H5G RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (33-44% DOSE) REMARK 900 RELATED ID: 1H5H RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (44-56% DOSE) REMARK 900 RELATED ID: 1H5I RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (56-67% DOSE) REMARK 900 RELATED ID: 1H5J RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (67-78% DOSE) REMARK 900 RELATED ID: 1H5K RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (78-89% DOSE) REMARK 900 RELATED ID: 1H5L RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (89-100% DOSE) REMARK 900 RELATED ID: 1H5M RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (0-100% DOSE) REMARK 900 RELATED ID: 1HCH RELATED DB: PDB REMARK 900 HORSERADISH PEROXIDASE COMPOUND I REMARK 900 RELATED ID: 1KZM RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (R38S/H42E) OF REMARK 900 RECOMBINANTHORSERADISH PEROXIDASE C (HRP C). REMARK 900 RELATED ID: 2ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE COMPLEX WITH REMARK 900 BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 3ATJ RELATED DB: PDB REMARK 900 HEME LIGAND MUTANT OF RECOMBINANT HORSERADISH REMARK 900 PEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 4ATJ RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (H42E) OF REMARK 900 RECOMBINANT HORSERADISHPEROXIDASE IN COMPLEX REMARK 900 WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 6ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C COMPLEX REMARK 900 WITH FERULIC ACID REMARK 900 RELATED ID: 7ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A COMPLEX REMARK 900 WITH CYANIDE AND FERULIC ACID
DBREF 1GX2 A 0 0 PDB 1GX2 1GX2 0 0 DBREF 1GX2 A 1 308 UNP P00433 PERA_ARMRU 31 338 DBREF 1GX2 B 0 0 PDB 1GX2 1GX2 0 0 DBREF 1GX2 B 1 308 UNP P00433 PERA_ARMRU 31 338
SEQADV 1GX2 SER A 179 UNP P00433 PHE 209 ENGINEERED MUTATION SEQADV 1GX2 SER B 179 UNP P00433 PHE 209 ENGINEERED MUTATION
SEQRES 1 A 309 MET GLN LEU THR PRO THR PHE TYR ASP ASN SER CYS PRO SEQRES 2 A 309 ASN VAL SER ASN ILE VAL ARG ASP THR ILE VAL ASN GLU SEQRES 3 A 309 LEU ARG SER ASP PRO ARG ILE ALA ALA SER ILE LEU ARG SEQRES 4 A 309 LEU HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP ALA SEQRES 5 A 309 SER ILE LEU LEU ASP ASN THR THR SER PHE ARG THR GLU SEQRES 6 A 309 LYS ASP ALA PHE GLY ASN ALA ASN SER ALA ARG GLY PHE SEQRES 7 A 309 PRO VAL ILE ASP ARG MET LYS ALA ALA VAL GLU SER ALA SEQRES 8 A 309 CYS PRO ARG THR VAL SER CYS ALA ASP LEU LEU THR ILE SEQRES 9 A 309 ALA ALA GLN GLN SER VAL THR LEU ALA GLY GLY PRO SER SEQRES 10 A 309 TRP ARG VAL PRO LEU GLY ARG ARG ASP SER LEU GLN ALA SEQRES 11 A 309 PHE LEU ASP LEU ALA ASN ALA ASN LEU PRO ALA PRO PHE SEQRES 12 A 309 PHE THR LEU PRO GLN LEU LYS ASP SER PHE ARG ASN VAL SEQRES 13 A 309 GLY LEU ASN ARG SER SER ASP LEU VAL ALA LEU SER GLY SEQRES 14 A 309 GLY HIS THR PHE GLY LYS ASN GLN CYS ARG SER ILE MET SEQRES 15 A 309 ASP ARG LEU TYR ASN PHE SER ASN THR GLY LEU PRO ASP SEQRES 16 A 309 PRO THR LEU ASN THR THR TYR LEU GLN THR LEU ARG GLY SEQRES 17 A 309 LEU CYS PRO LEU ASN GLY ASN LEU SER ALA LEU VAL ASP SEQRES 18 A 309 PHE ASP LEU ARG THR PRO THR ILE PHE ASP ASN LYS TYR SEQRES 19 A 309 TYR VAL ASN LEU GLU GLU GLN LYS GLY LEU ILE GLN SER SEQRES 20 A 309 ASP GLN GLU LEU PHE SER SER PRO ASN ALA THR ASP THR SEQRES 21 A 309 ILE PRO LEU VAL ARG SER PHE ALA ASN SER THR GLN THR SEQRES 22 A 309 PHE PHE ASN ALA PHE VAL GLU ALA MET ASP ARG MET GLY SEQRES 23 A 309 ASN ILE THR PRO LEU THR GLY THR GLN GLY GLN ILE ARG SEQRES 24 A 309 LEU ASN CYS ARG VAL VAL ASN SER ASN SER SEQRES 1 B 309 MET GLN LEU THR PRO THR PHE TYR ASP ASN SER CYS PRO SEQRES 2 B 309 ASN VAL SER ASN ILE VAL ARG ASP THR ILE VAL ASN GLU SEQRES 3 B 309 LEU ARG SER ASP PRO ARG ILE ALA ALA SER ILE LEU ARG SEQRES 4 B 309 LEU HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP ALA SEQRES 5 B 309 SER ILE LEU LEU ASP ASN THR THR SER PHE ARG THR GLU SEQRES 6 B 309 LYS ASP ALA PHE GLY ASN ALA ASN SER ALA ARG GLY PHE SEQRES 7 B 309 PRO VAL ILE ASP ARG MET LYS ALA ALA VAL GLU SER ALA SEQRES 8 B 309 CYS PRO ARG THR VAL SER CYS ALA ASP LEU LEU THR ILE SEQRES 9 B 309 ALA ALA GLN GLN SER VAL THR LEU ALA GLY GLY PRO SER SEQRES 10 B 309 TRP ARG VAL PRO LEU GLY ARG ARG ASP SER LEU GLN ALA SEQRES 11 B 309 PHE LEU ASP LEU ALA ASN ALA ASN LEU PRO ALA PRO PHE SEQRES 12 B 309 PHE THR LEU PRO GLN LEU LYS ASP SER PHE ARG ASN VAL SEQRES 13 B 309 GLY LEU ASN ARG SER SER ASP LEU VAL ALA LEU SER GLY SEQRES 14 B 309 GLY HIS THR PHE GLY LYS ASN GLN CYS ARG SER ILE MET SEQRES 15 B 309 ASP ARG LEU TYR ASN PHE SER ASN THR GLY LEU PRO ASP SEQRES 16 B 309 PRO THR LEU ASN THR THR TYR LEU GLN THR LEU ARG GLY SEQRES 17 B 309 LEU CYS PRO LEU ASN GLY ASN LEU SER ALA LEU VAL ASP SEQRES 18 B 309 PHE ASP LEU ARG THR PRO THR ILE PHE ASP ASN LYS TYR SEQRES 19 B 309 TYR VAL ASN LEU GLU GLU GLN LYS GLY LEU ILE GLN SER SEQRES 20 B 309 ASP GLN GLU LEU PHE SER SER PRO ASN ALA THR ASP THR SEQRES 21 B 309 ILE PRO LEU VAL ARG SER PHE ALA ASN SER THR GLN THR SEQRES 22 B 309 PHE PHE ASN ALA PHE VAL GLU ALA MET ASP ARG MET GLY SEQRES 23 B 309 ASN ILE THR PRO LEU THR GLY THR GLN GLY GLN ILE ARG SEQRES 24 B 309 LEU ASN CYS ARG VAL VAL ASN SER ASN SER
HET CA A1310 1 HET CA A1311 1 HET CA B1310 1 HET CA B1311 1 HET HEM A1308 43 HET BHO A1309 10 HET HEM B1308 43 HET BHO B1309 10
HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM BHO BENZHYDROXAMIC ACID
HETSYN HEM [DIHYDROGEN 3,7,12,17-TETRAMETHYL-8,13- HETSYN 2 HEM DIVINYL-2,18-PORPHINEDIPROPIONATO(2-)]IRON
FORMUL 3 CA 4(CA 2+) FORMUL 7 HEM 2(C34 H32 FE N4 O4) FORMUL 8 BHO 2(C7 H7 N O2) FORMUL 11 HOH *372(H2 O1)
HELIX 1 1 ASN A 13 ASP A 29 1 17 HELIX 2 2 ARG A 31 PHE A 45 1 15 HELIX 3 3 ALA A 51 LEU A 55 5 5 HELIX 4 4 THR A 63 ALA A 67 5 5 HELIX 5 5 GLY A 76 CYS A 91 1 16 HELIX 6 6 SER A 96 ALA A 112 1 17 HELIX 7 7 PHE A 130 LEU A 138 1 9 HELIX 8 8 THR A 144 VAL A 155 1 12 HELIX 9 9 ARG A 159 SER A 167 1 9 HELIX 10 10 GLY A 168 PHE A 172 5 5 HELIX 11 11 ILE A 180 ASN A 186 1 7 HELIX 12 12 PHE A 187 THR A 190 5 4 HELIX 13 13 ASN A 198 CYS A 209 1 12 HELIX 14 14 ASN A 231 GLU A 239 1 9 HELIX 15 15 ILE A 244 SER A 253 1 10 HELIX 16 16 ASN A 255 ASP A 258 5 4 HELIX 17 17 THR A 259 SER A 269 1 11 HELIX 18 18 SER A 269 GLY A 285 1 17 HELIX 19 19 ASN B 13 ASP B 29 1 17 HELIX 20 20 ARG B 31 PHE B 45 1 15 HELIX 21 21 ALA B 51 LEU B 55 5 5 HELIX 22 22 THR B 63 ALA B 67 5 5 HELIX 23 23 GLY B 76 CYS B 91 1 16 HELIX 24 24 SER B 96 ALA B 112 1 17 HELIX 25 25 PHE B 130 LEU B 138 1 9 HELIX 26 26 THR B 144 VAL B 155 1 12 HELIX 27 27 ARG B 159 SER B 167 1 9 HELIX 28 28 GLY B 168 PHE B 172 5 5 HELIX 29 29 ILE B 180 ASN B 186 1 7 HELIX 30 30 PHE B 187 THR B 190 5 4 HELIX 31 31 ASN B 198 CYS B 209 1 12 HELIX 32 32 ASN B 231 GLU B 239 1 9 HELIX 33 33 ILE B 244 SER B 253 1 10 HELIX 34 34 ASN B 255 ASP B 258 5 4 HELIX 35 35 THR B 259 SER B 269 1 11 HELIX 36 36 SER B 269 GLY B 285 1 17
SHEET 1 AA 2 LYS A 174 GLN A 176 0 SHEET 2 AA 2 LEU A 218 ASP A 220 -1 O VAL A 219 N ASN A 175 SHEET 1 BA 2 LYS B 174 GLN B 176 0 SHEET 2 BA 2 LEU B 218 ASP B 220 -1 O VAL B 219 N ASN B 175
SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 91 1555 1555 2.04 SSBOND 3 CYS A 44 CYS A 49 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 301 1555 1555 2.03 SSBOND 5 CYS A 177 CYS A 209 1555 1555 2.03 SSBOND 6 CYS B 11 CYS B 91 1555 1555 2.04 SSBOND 7 CYS B 11 CYS B 91 1555 1555 2.02 SSBOND 8 CYS B 44 CYS B 49 1555 1555 2.04 SSBOND 9 CYS B 97 CYS B 301 1555 1555 2.03 SSBOND 10 CYS B 177 CYS B 209 1555 1555 2.03
LINK FE HEM A1308 O HOH A2185 1555 1555 2.89 LINK FE HEM A1308 NE2 HIS A 170 1555 1555 2.27 LINK CA CA A1310 OD1 ASP A 222 1555 1555 2.36 LINK CA CA A1310 O THR A 171 1555 1555 2.36 LINK CA CA A1310 O THR A 225 1555 1555 2.45 LINK CA CA A1310 OG1 THR A 225 1555 1555 2.44 LINK CA CA A1310 O ILE A 228 1555 1555 2.34 LINK CA CA A1310 OD2 ASP A 230 1555 1555 2.40 LINK CA CA A1310 OG1 THR A 171 1555 1555 2.59 LINK CA CA A1311 O ASP A 43 1555 1555 2.33 LINK CA CA A1311 OD1 ASP A 43 1555 1555 2.29 LINK CA CA A1311 OD1 ASP A 50 1555 1555 2.42 LINK CA CA A1311 OG SER A 52 1555 1555 2.58 LINK CA CA A1311 O HOH A2040 1555 1555 2.47 LINK CA CA A1311 O VAL A 46 1555 1555 2.35 LINK CA CA A1311 O GLY A 48 1555 1555 2.50 LINK FE HEM B1308 NE2 HIS B 170 1555 1555 2.27 LINK FE HEM B1308 O HOH B2187 1555 1555 2.89 LINK CA CA B1310 OD1 ASP B 222 1555 1555 2.36 LINK CA CA B1310 OG1 THR B 171 1555 1555 2.60 LINK CA CA B1310 OD2 ASP B 230 1555 1555 2.40 LINK CA CA B1310 O ILE B 228 1555 1555 2.34 LINK CA CA B1310 OG1 THR B 225 1555 1555 2.44 LINK CA CA B1310 O THR B 225 1555 1555 2.45 LINK CA CA B1310 O THR B 171 1555 1555 2.36 LINK CA CA B1311 OD1 ASP B 43 1555 1555 2.29 LINK CA CA B1311 O GLY B 48 1555 1555 2.50 LINK CA CA B1311 O ASP B 43 1555 1555 2.34 LINK CA CA B1311 O HOH B2040 1555 1555 2.47 LINK CA CA B1311 OG SER B 52 1555 1555 2.58 LINK CA CA B1311 OD1 ASP B 50 1555 1555 2.42 LINK CA CA B1311 O VAL B 46 1555 1555 2.35
SITE 1 AC1 5 THR A 171 ASP A 222 THR A 225 ILE A 228 SITE 2 AC1 5 ASP A 230 SITE 1 AC2 6 ASP A 43 VAL A 46 GLY A 48 ASP A 50 SITE 2 AC2 6 SER A 52 HOH A2040 SITE 1 AC3 5 THR B 171 ASP B 222 THR B 225 ILE B 228 SITE 2 AC3 5 ASP B 230 SITE 1 AC4 6 ASP B 43 VAL B 46 GLY B 48 ASP B 50 SITE 2 AC4 6 SER B 52 HOH B2040 SITE 1 AC5 25 ARG A 31 ALA A 34 SER A 35 ARG A 38 SITE 2 AC5 25 PHE A 41 SER A 73 PRO A 139 ALA A 140 SITE 3 AC5 25 PRO A 141 LEU A 166 GLY A 169 HIS A 170 SITE 4 AC5 25 PHE A 172 GLY A 173 LYS A 174 ASN A 175 SITE 5 AC5 25 GLN A 176 PHE A 221 SER A 246 BHO A1309 SITE 6 AC5 25 HOH A2024 HOH A2182 HOH A2183 HOH A2184 SITE 7 AC5 25 HOH A2185 SITE 1 AC6 7 ARG A 38 PHE A 41 HIS A 42 PHE A 68 SITE 2 AC6 7 PRO A 139 HEM A1308 HOH A2185 SITE 1 AC7 25 ARG B 31 ALA B 34 SER B 35 ARG B 38 SITE 2 AC7 25 PHE B 41 SER B 73 PRO B 139 ALA B 140 SITE 3 AC7 25 PRO B 141 LEU B 166 GLY B 169 HIS B 170 SITE 4 AC7 25 PHE B 172 GLY B 173 LYS B 174 ASN B 175 SITE 5 AC7 25 GLN B 176 PHE B 221 SER B 246 BHO B1309 SITE 6 AC7 25 HOH B2027 HOH B2184 HOH B2185 HOH B2186 SITE 7 AC7 25 HOH B2187 SITE 1 AC8 7 ARG B 38 PHE B 41 HIS B 42 PHE B 68 SITE 2 AC8 7 PRO B 139 HEM B1308 HOH B2187
CRYST1 75.036 62.298 78.246 90.00 104.27 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013327 0.000000 0.003389 0.00000
SCALE2 0.000000 0.016052 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013187 0.00000