10 20 30 40 50 60 70 80 1GWV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 26-MAR-02 1GWV
TITLE ALPHA-,1,3 GALACTOSYLTRANSFERASE - LACTOSE COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE COMPND 3 ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN RESIDUES 80-368; COMPND 6 SYNONYM: GALACTOSYLTRANSFERASE, UDP-GALACTOSE\: COMPND 7 BETA-D-GALACTOSYL-1,4-N-ACETYL-D-GLUCOSAMINIDE COMPND 8 ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 9 EC: 2.4.1.151; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DH5-ALPHA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSV-SPORT
KEYWDS GALACTOSYLTRANSFERASE, BLOOD GROUP SUGARS, LACTOSE, N- KEYWDS 2 ACETYL LACTOSAMINE, TRANSFERASE, GLYCOSYLTRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR E.BOIX,Y.ZHANG,G.J.SWAMINATHAN,K.BREW,K.R.ACHARYA
REVDAT 4 06-OCT-09 1GWV 1 REMARK HETNAM REVDAT 3 24-FEB-09 1GWV 1 VERSN REVDAT 2 18-JUL-03 1GWV 1 REMARK REVDAT 1 20-MAR-03 1GWV 0
JRNL AUTH E.BOIX,Y.ZHANG,G.J.SWAMINATHAN,K.BREW,K.R.ACHARYA JRNL TITL STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND JRNL TITL 2 ACCEPTOR SUBSTRATES TO THE RETAINING JRNL TITL 3 GLYCOSYLTRANSFERASE, ALPHA -1,3 JRNL TITL 4 GALACTOSYLTRANSFERASE JRNL REF J.BIOL.CHEM. V. 277 28310 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 12011052 JRNL DOI 10.1074/JBC.M202631200
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.BOIX,G.J.SWAMINATHAN,Y.ZHANG,R.NATESH,K.BREW, REMARK 1 AUTH 2 K.R.ACHARYA REMARK 1 TITL STRUCTURE OF UDP COMPLEX OF REMARK 1 TITL 2 UDP-GALACTOSE:BETA-GALACTOSIDE-ALPHA REMARK 1 TITL 3 -1,3-GALACTOSYLTRANSFERASE AT 1.53-A RESOLUTION REMARK 1 TITL 4 REVEALS A CONFORMATIONAL CHANGE IN THE REMARK 1 TITL 5 CATALYTICALLY IMPORTANT C TERMINUS REMARK 1 REF J.BIOL.CHEM. V. 276 48608 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11592969 REMARK 1 DOI 10.1074/JBC.M108828200
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1087154.27 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 25748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 1240 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.5 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3877 REMARK 3 BIN R VALUE (WORKING SET) : 0.258 REMARK 3 BIN FREE R VALUE : 0.348 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 98 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20 REMARK 3 B22 (A**2) : 4.06 REMARK 3 B33 (A**2) : -5.26 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 1.97 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.4 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.3 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.19 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.94 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.85 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.72 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35378 REMARK 3 BSOL : 22.8445 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LACTOSE.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LACTOSE.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GWV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-02. REMARK 100 THE PDBE ID CODE IS EBI-9626.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25766 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1K4V REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, TRIS/HCL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.98900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 80 REMARK 465 SER A 81 REMARK 465 GLU B 80 REMARK 465 SER B 81
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 175 79.77 -102.36 REMARK 500 HIS A 213 -38.21 -154.66 REMARK 500 TYR A 269 131.95 -39.99 REMARK 500 HIS A 315 -123.55 52.71 REMARK 500 CYS A 338 74.92 -170.17 REMARK 500 LYS B 126 76.19 46.85 REMARK 500 HIS B 213 -41.94 -156.99 REMARK 500 HIS B 315 -125.92 50.33 REMARK 500 CYS B 338 71.74 -174.53 REMARK 500 GLU B 360 44.25 -143.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1370 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD2 REMARK 620 2 UDP A1369 O1A 111.2 REMARK 620 3 ASP A 227 OD1 106.1 80.9 REMARK 620 4 ASP A 227 OD2 160.4 71.5 54.6 REMARK 620 5 UDP A1369 O1B 100.3 94.5 153.1 98.7 REMARK 620 6 HOH A2077 O 90.6 158.1 95.0 88.5 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1370 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 227 OD1 REMARK 620 2 HOH B2096 O 94.8 REMARK 620 3 ASP B 227 OD2 52.0 82.1 REMARK 620 4 UDP B1369 O1B 160.1 81.9 108.2 REMARK 620 5 ASP B 225 OD2 110.6 98.5 162.4 89.2 REMARK 620 6 UDP B1369 O1A 82.5 157.6 78.8 93.0 103.3 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAT A1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAT B1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B1369
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FG5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE ALPHA-1,3- REMARK 900 GALACTOSYLTRANSFERASECATALYTIC DOMAIN. REMARK 900 RELATED ID: 1G8O RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THE NATIVE REMARK 900 BOVINE ALPHA-1,3-GALACTOSYLTRANSFERASE REMARK 900 CATALYTIC DOMAIN REMARK 900 RELATED ID: 1G93 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BOVINE CATALYTIC REMARK 900 DOMAIN OF ALPHA-1,3-GALACTOSYLTRANSFERASE IN REMARK 900 THE PRESENCE OF UDP-GALACTOSE REMARK 900 RELATED ID: 1GWW RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF ORDERED BINDING OF DONOR REMARK 900 AND ACCEPTOR SUBSTRATES TO THE RETAINING REMARK 900 GLYCOSYLTRANSFERASE: ALPHA -1,3 REMARK 900 GALACTOSYLTRANSFERASE REMARK 900 RELATED ID: 1GX0 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF ORDERED BINDING OF DONOR REMARK 900 AND ACCEPTOR SUBSTRATES TO THE RETAINING REMARK 900 GLYCOSYLTRANSFERASE: ALPHA -1,3 REMARK 900 GALACTOSYLTRANSFERASE REMARK 900 RELATED ID: 1GX4 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF ORDERED BINDING OF DONOR REMARK 900 AND ACCEPTOR SUBSTRATES TO THE RETAINING REMARK 900 GLYCOSYLTRANSFERASE: ALPHA -1,3 REMARK 900 GALACTOSYLTRANSFERASE REMARK 900 RELATED ID: 1K4V RELATED DB: PDB REMARK 900 1.53 A CRYSTAL STRUCTURE OF THE BETA- REMARK 900 GALACTOSIDE-ALPHA-1,3-GALACTOSYLTRANSFERASE IN REMARK 900 COMPLEX WITH UDP REMARK 900 RELATED ID: 1O7O RELATED DB: PDB REMARK 900 ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 REMARK 900 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING REMARK 900 AND CATALYSIS REMARK 900 RELATED ID: 1O7Q RELATED DB: PDB REMARK 900 ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 REMARK 900 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING REMARK 900 AND CATALYSIS REMARK 900 RELATED ID: 1O7R RELATED DB: PDB REMARK 900 ROLES ON INDIVIDUAL RESIDUES OF ALPHA-1,3 REMARK 900 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING REMARK 900 AND CATALYSIS
DBREF 1GWV A 80 368 UNP P14769 GATR_BOVIN 80 368 DBREF 1GWV B 80 368 UNP P14769 GATR_BOVIN 80 368
SEQRES 1 A 289 GLU SER LYS LEU LYS LEU SER ASP TRP PHE ASN PRO PHE SEQRES 2 A 289 LYS ARG PRO GLU VAL VAL THR MET THR LYS TRP LYS ALA SEQRES 3 A 289 PRO VAL VAL TRP GLU GLY THR TYR ASN ARG ALA VAL LEU SEQRES 4 A 289 ASP ASN TYR TYR ALA LYS GLN LYS ILE THR VAL GLY LEU SEQRES 5 A 289 THR VAL PHE ALA VAL GLY ARG TYR ILE GLU HIS TYR LEU SEQRES 6 A 289 GLU GLU PHE LEU THR SER ALA ASN LYS HIS PHE MET VAL SEQRES 7 A 289 GLY HIS PRO VAL ILE PHE TYR ILE MET VAL ASP ASP VAL SEQRES 8 A 289 SER ARG MET PRO LEU ILE GLU LEU GLY PRO LEU ARG SER SEQRES 9 A 289 PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS ARG TRP GLN SEQRES 10 A 289 ASP ILE SER MET MET ARG MET LYS THR ILE GLY GLU HIS SEQRES 11 A 289 ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP PHE LEU PHE SEQRES 12 A 289 CYS MET ASP VAL ASP GLN VAL PHE GLN ASP LYS PHE GLY SEQRES 13 A 289 VAL GLU THR LEU GLY GLU SER VAL ALA GLN LEU GLN ALA SEQRES 14 A 289 TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE THR TYR GLU SEQRES 15 A 289 ARG ARG LYS GLU SER ALA ALA TYR ILE PRO PHE GLY GLU SEQRES 16 A 289 GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE GLY GLY THR SEQRES 17 A 289 PRO THR GLN VAL LEU ASN ILE THR GLN GLU CYS PHE LYS SEQRES 18 A 289 GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE GLU ALA GLN SEQRES 19 A 289 TRP HIS ASP GLU SER HIS LEU ASN LYS TYR PHE LEU LEU SEQRES 20 A 289 ASN LYS PRO THR LYS ILE LEU SER PRO GLU TYR CYS TRP SEQRES 21 A 289 ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE LYS LEU VAL SEQRES 22 A 289 LYS MET SER TRP GLN THR LYS GLU TYR ASN VAL VAL ARG SEQRES 23 A 289 ASN ASN VAL SEQRES 1 B 289 GLU SER LYS LEU LYS LEU SER ASP TRP PHE ASN PRO PHE SEQRES 2 B 289 LYS ARG PRO GLU VAL VAL THR MET THR LYS TRP LYS ALA SEQRES 3 B 289 PRO VAL VAL TRP GLU GLY THR TYR ASN ARG ALA VAL LEU SEQRES 4 B 289 ASP ASN TYR TYR ALA LYS GLN LYS ILE THR VAL GLY LEU SEQRES 5 B 289 THR VAL PHE ALA VAL GLY ARG TYR ILE GLU HIS TYR LEU SEQRES 6 B 289 GLU GLU PHE LEU THR SER ALA ASN LYS HIS PHE MET VAL SEQRES 7 B 289 GLY HIS PRO VAL ILE PHE TYR ILE MET VAL ASP ASP VAL SEQRES 8 B 289 SER ARG MET PRO LEU ILE GLU LEU GLY PRO LEU ARG SER SEQRES 9 B 289 PHE LYS VAL PHE LYS ILE LYS PRO GLU LYS ARG TRP GLN SEQRES 10 B 289 ASP ILE SER MET MET ARG MET LYS THR ILE GLY GLU HIS SEQRES 11 B 289 ILE VAL ALA HIS ILE GLN HIS GLU VAL ASP PHE LEU PHE SEQRES 12 B 289 CYS MET ASP VAL ASP GLN VAL PHE GLN ASP LYS PHE GLY SEQRES 13 B 289 VAL GLU THR LEU GLY GLU SER VAL ALA GLN LEU GLN ALA SEQRES 14 B 289 TRP TRP TYR LYS ALA ASP PRO ASN ASP PHE THR TYR GLU SEQRES 15 B 289 ARG ARG LYS GLU SER ALA ALA TYR ILE PRO PHE GLY GLU SEQRES 16 B 289 GLY ASP PHE TYR TYR HIS ALA ALA ILE PHE GLY GLY THR SEQRES 17 B 289 PRO THR GLN VAL LEU ASN ILE THR GLN GLU CYS PHE LYS SEQRES 18 B 289 GLY ILE LEU LYS ASP LYS LYS ASN ASP ILE GLU ALA GLN SEQRES 19 B 289 TRP HIS ASP GLU SER HIS LEU ASN LYS TYR PHE LEU LEU SEQRES 20 B 289 ASN LYS PRO THR LYS ILE LEU SER PRO GLU TYR CYS TRP SEQRES 21 B 289 ASP TYR HIS ILE GLY LEU PRO ALA ASP ILE LYS LEU VAL SEQRES 22 B 289 LYS MET SER TRP GLN THR LYS GLU TYR ASN VAL VAL ARG SEQRES 23 B 289 ASN ASN VAL
HET LAT A1371 23 HET LAT B1371 23 HET MN A1370 1 HET MN B1370 1 HET UDP A1369 25 HET UDP B1369 25
HETNAM LAT BETA-LACTOSE HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE
FORMUL 3 LAT 2(C12 H22 O11) FORMUL 5 MN 2(MN 2+) FORMUL 7 UDP 2(C9 H14 N2 O12 P2) FORMUL 9 HOH *180(H2 O1)
HELIX 1 1 LYS A 84 TRP A 88 5 5 HELIX 2 2 ASN A 90 ARG A 94 5 5 HELIX 3 3 ASN A 114 LYS A 124 1 11 HELIX 4 4 ARG A 138 PHE A 155 1 18 HELIX 5 5 ASP A 169 MET A 173 5 5 HELIX 6 6 ARG A 194 VAL A 218 1 25 HELIX 7 7 GLY A 235 LEU A 239 5 5 HELIX 8 8 ASP A 254 PHE A 258 5 5 HELIX 9 9 THR A 287 ASN A 308 1 22 HELIX 10 10 HIS A 315 ASN A 327 1 13 HELIX 11 11 PRO A 335 CYS A 338 5 4 HELIX 12 12 ASP A 340 GLY A 344 5 5 HELIX 13 13 GLU A 360 ARG A 365 1 6 HELIX 14 14 LYS B 84 PHE B 89 1 6 HELIX 15 15 ASN B 90 ARG B 94 5 5 HELIX 16 16 ASN B 114 GLN B 125 1 12 HELIX 17 17 ARG B 138 PHE B 155 1 18 HELIX 18 18 ARG B 194 VAL B 218 1 25 HELIX 19 19 GLY B 235 LEU B 239 5 5 HELIX 20 20 ASP B 254 PHE B 258 5 5 HELIX 21 21 THR B 287 ASN B 308 1 22 HELIX 22 22 HIS B 315 ASN B 327 1 13 HELIX 23 23 PRO B 335 CYS B 338 5 4 HELIX 24 24 ASP B 340 GLY B 344 5 5 HELIX 25 25 GLU B 360 ARG B 365 1 6
SHEET 1 AA 8 VAL A 107 VAL A 108 0 SHEET 2 AA 8 LYS A 331 LEU A 333 1 O ILE A 332 N VAL A 108 SHEET 3 AA 8 SER A 242 LEU A 246 1 O ALA A 244 N LEU A 333 SHEET 4 AA 8 TYR A 279 GLY A 286 -1 N HIS A 280 O GLN A 245 SHEET 5 AA 8 PHE A 220 MET A 224 -1 O LEU A 221 N GLY A 286 SHEET 6 AA 8 VAL A 129 ALA A 135 1 O GLY A 130 N PHE A 222 SHEET 7 AA 8 VAL A 161 VAL A 167 1 O ILE A 162 N LEU A 131 SHEET 8 AA 8 ARG A 182 LYS A 188 1 O SER A 183 N PHE A 163 SHEET 1 AB 2 GLN A 228 PHE A 230 0 SHEET 2 AB 2 MET A 354 TRP A 356 -1 O SER A 355 N VAL A 229 SHEET 1 BA 8 VAL B 107 VAL B 108 0 SHEET 2 BA 8 LYS B 331 LEU B 333 1 O ILE B 332 N VAL B 108 SHEET 3 BA 8 SER B 242 LEU B 246 1 O SER B 242 N LYS B 331 SHEET 4 BA 8 TYR B 279 GLY B 286 -1 N HIS B 280 O GLN B 245 SHEET 5 BA 8 PHE B 220 MET B 224 -1 O LEU B 221 N GLY B 286 SHEET 6 BA 8 VAL B 129 ALA B 135 1 O GLY B 130 N PHE B 222 SHEET 7 BA 8 VAL B 161 VAL B 167 1 O ILE B 162 N LEU B 131 SHEET 8 BA 8 ARG B 182 LYS B 188 1 O SER B 183 N PHE B 163 SHEET 1 BB 2 GLN B 228 PHE B 230 0 SHEET 2 BB 2 MET B 354 TRP B 356 -1 O SER B 355 N VAL B 229
LINK MN MN A1370 OD2 ASP A 225 1555 1555 2.46 LINK MN MN A1370 O1A UDP A1369 1555 1555 2.70 LINK MN MN A1370 OD1 ASP A 227 1555 1555 2.21 LINK MN MN A1370 OD2 ASP A 227 1555 1555 2.53 LINK MN MN A1370 O1B UDP A1369 1555 1555 2.17 LINK MN MN A1370 O HOH A2077 1555 1555 2.34 LINK MN MN B1370 O HOH B2096 1555 1555 2.13 LINK MN MN B1370 OD2 ASP B 227 1555 1555 2.75 LINK MN MN B1370 O1B UDP B1369 1555 1555 2.16 LINK MN MN B1370 OD2 ASP B 225 1555 1555 2.09 LINK MN MN B1370 O1A UDP B1369 1555 1555 2.51 LINK MN MN B1370 OD1 ASP B 227 1555 1555 2.07
SITE 1 AC1 11 GLN A 247 TRP A 250 THR A 259 TYR A 278 SITE 2 AC1 11 TRP A 314 GLU A 317 TRP A 356 LYS A 359 SITE 3 AC1 11 UDP A1369 HOH A2080 HOH A2081 SITE 1 AC2 14 GLN B 247 TRP B 250 THR B 259 TYR B 278 SITE 2 AC2 14 TRP B 314 GLU B 317 TRP B 356 LYS B 359 SITE 3 AC2 14 UDP B1369 HOH B2087 HOH B2089 HOH B2097 SITE 4 AC2 14 HOH B2098 HOH B2099 SITE 1 AC3 4 ASP A 225 ASP A 227 UDP A1369 HOH A2077 SITE 1 AC4 4 ASP B 225 ASP B 227 UDP B1369 HOH B2096 SITE 1 AC5 22 PHE A 134 ALA A 135 VAL A 136 TYR A 139 SITE 2 AC5 22 ILE A 198 SER A 199 ARG A 202 ASP A 225 SITE 3 AC5 22 VAL A 226 ASP A 227 LYS A 359 TYR A 361 SITE 4 AC5 22 ARG A 365 MN A1370 LAT A1371 HOH A2015 SITE 5 AC5 22 HOH A2050 HOH A2073 HOH A2074 HOH A2075 SITE 6 AC5 22 HOH A2076 HOH A2077 SITE 1 AC6 21 PHE B 134 ALA B 135 VAL B 136 TYR B 139 SITE 2 AC6 21 ILE B 198 SER B 199 ARG B 202 ASP B 225 SITE 3 AC6 21 VAL B 226 ASP B 227 LYS B 359 TYR B 361 SITE 4 AC6 21 ARG B 365 MN B1370 LAT B1371 HOH B2040 SITE 5 AC6 21 HOH B2087 HOH B2093 HOH B2094 HOH B2095 SITE 6 AC6 21 HOH B2096
CRYST1 45.010 93.978 94.681 90.00 99.05 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022217 0.000000 0.003539 0.00000
SCALE2 0.000000 0.010641 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010695 0.00000