10 20 30 40 50 60 70 80 1GWU - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 25-MAR-02 1GWU
TITLE RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIDASE C1A; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARMORACIA RUSTICANA; SOURCE 3 ORGANISM_COMMON: HORSERADISH; SOURCE 4 ORGANISM_TAXID: 3704; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 OTHER_DETAILS: SYNTHETIC GENE. SYNTHETIC GENE
KEYWDS PEROXIDASE, OXIDOREDUCTASE, GLYCOPROTEIN, HEME, MULTIGENE KEYWDS 2 FAMILY, SIGNAL,
EXPDTA X-RAY DIFFRACTION
AUTHOR A.HENRIKSEN,N.BRISSETT,M.GAJHEDE
REVDAT 2 24-FEB-09 1GWU 1 VERSN REVDAT 1 28-MAR-03 1GWU 0
JRNL AUTH A.HENRIKSEN,N.BRISSETT,M.GAJHEDE JRNL TITL HRPC HEME CREVICE ARCHITECTURE JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.HENRIKSEN,A.T.SMITH,M.GAJHEDE REMARK 1 TITL THE STRUCTURES OF THE HORSERADISH PEROXIDASE REMARK 1 TITL 2 C-FERULIC ACID COMPLEX AND THE TERNARY COMPLEX REMARK 1 TITL 3 WITH CYANIDE SUGGEST HOW PEROXIDASES OXIDIZE SMALL REMARK 1 TITL 4 PHENOLIC SUBSTRATES REMARK 1 REF J.BIOL.CHEM. V. 274 35005 1999 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10574977 REMARK 1 DOI 10.1074/JBC.274.49.35005 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.HENRIKSEN,D.J.SCHULLER,K.MENO,K.G.WELINDER, REMARK 1 AUTH 2 A.T.SMITH,M.GAJHEDE REMARK 1 TITL STRUCTURAL INTERACTIONS BETWEEN HORSERADISH REMARK 1 TITL 2 PEROXIDASE C AND THE SUBSTRATE BENZHYDROXAMIC ACID REMARK 1 TITL 3 DETERMINED BY X-RAY CRYSTALLOGRAPHY REMARK 1 REF BIOCHEMISTRY V. 37 8054 1998 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9609699 REMARK 1 DOI 10.1021/BI980234J REMARK 1 REFERENCE 3 REMARK 1 AUTH M.GAJHEDE,D.J.SCHULLER,A.HENRIKSEN,A.T.SMITH, REMARK 1 AUTH 2 T.L.POULOS REMARK 1 TITL CRYSTAL STRUCTURE OF HORSERADISH PEROXIDASE C AT REMARK 1 TITL 2 2.15 A RESOLUTION REMARK 1 REF NAT.STRUCT.BIOL. V. 4 1032 1997 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 9406554 REMARK 1 DOI 10.1038/NSB1297-1032 REMARK 1 REFERENCE 4 REMARK 1 AUTH A.HENRIKSEN,M.GAJHEDE,P.BAKER,A.T.SMITH,J.F.BURKE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF REMARK 1 TITL 2 RECOMBINANT HORSERADISH PEROXIDASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. D51 121 1995 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15299344 REMARK 1 DOI 10.1107/S0907444994008723
REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLF REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 836681.47 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 68207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3486 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.1 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 10084 REMARK 3 BIN R VALUE (WORKING SET) : 0.286 REMARK 3 BIN FREE R VALUE : 0.303 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.2 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 558 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2473 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 534 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30 REMARK 3 B22 (A**2) : 1.29 REMARK 3 B33 (A**2) : 0.02 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.7 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.9 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.48 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.06 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.53 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.05 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.04 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39895 REMARK 3 BSOL : 44.8875 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE IDENTITY OF THE SODIUM ION IS REMARK 3 ONLY BASED ON THE ELECTRON DENSITY LEVEL AND THE PRESENCE OF REMARK 3 SODIUM IN THE CRYSTALLISATION BUFFER
REMARK 4 REMARK 4 1GWU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-02. REMARK 100 THE PDBE ID CODE IS EBI-9584.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0835 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERTICALLY FOCUSING REMARK 200 CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 423859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 13.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 7ATJ REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16%(W/V)PEG4000,0.2M CALCIUM REMARK 280 ACETATE,0.1M CACODYLATE PH6.5
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.01850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.17800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.40300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.17800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.01850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.40300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 307 REMARK 465 SER A 308
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 306 CA C O CB OG
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 182 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 11 69.41 -160.69 REMARK 500 ALA A 51 17.98 57.77 REMARK 500 SER A 73 -62.54 -156.59 REMARK 500 ASN A 186 88.23 -161.88 REMARK 500 THR A 288 61.22 30.88 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2497 O REMARK 620 2 HOH A2501 O 88.1 REMARK 620 3 HOH A2496 O 60.5 127.0 REMARK 620 4 HOH A2504 O 82.9 91.0 122.2 REMARK 620 5 HOH A2145 O 153.0 72.8 116.6 115.5 REMARK 620 6 HOH A2129 O 151.8 116.0 92.1 109.6 43.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1307 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 43 OD1 REMARK 620 2 HOH A2163 O 88.0 REMARK 620 3 SER A 52 OG 106.1 68.4 REMARK 620 4 ASP A 43 O 78.5 75.1 142.9 REMARK 620 5 GLY A 48 O 85.7 144.3 146.8 69.1 REMARK 620 6 ASP A 50 OD1 81.1 138.4 76.3 139.7 75.0 REMARK 620 7 VAL A 46 O 161.4 91.9 91.1 83.5 83.5 110.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 225 O REMARK 620 2 THR A 171 O 80.1 REMARK 620 3 THR A 225 OG1 69.8 149.7 REMARK 620 4 ASP A 222 OD1 86.7 89.3 86.3 REMARK 620 5 ILE A 228 O 92.7 84.5 99.3 173.8 REMARK 620 6 ASP A 230 OD2 140.5 137.6 72.4 102.0 82.4 REMARK 620 7 THR A 171 OG1 152.4 72.4 137.5 90.3 87.4 66.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HEM A1306 NC 94.5 REMARK 620 3 HEM A1306 ND 94.8 89.1 REMARK 620 4 HEM A1306 NA 101.0 164.4 90.1 REMARK 620 5 HEM A1306 NB 96.4 88.5 168.7 89.4 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A1306
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1GW2 RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A THR171SER REMARK 900 IN COMPLEX WITH FERULIC ACID REMARK 900 RELATED ID: 1GWO RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A ALA140GLN REMARK 900 RELATED ID: 1GWT RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A PHE221MET REMARK 900 RELATED ID: 1GX2 RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE PHE179SER REMARK 900 COMPLEX WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 1H55 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND II REMARK 900 RELATED ID: 1H57 RELATED DB: PDB REMARK 900 STRUCTURE OF HORSERADISH PEROXIDASE C1A COMPOUND III REMARK 900 RELATED ID: 1H58 RELATED DB: PDB REMARK 900 STRUCTURE OF FERROUS HORSERADISH PEROXIDASE C1A REMARK 900 RELATED ID: 1H5A RELATED DB: PDB REMARK 900 STRUCTURE OF FERRIC HORSERADISH PEROXIDASE C1A REMARK 900 IN COMPLEX WITH ACETATE REMARK 900 RELATED ID: 1H5C RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (100-200% DOSE) REMARK 900 RELATED ID: 1H5D RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (0-11% DOSE) REMARK 900 RELATED ID: 1H5E RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (11-22% DOSE) REMARK 900 RELATED ID: 1H5F RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (22-33% DOSE) REMARK 900 RELATED ID: 1H5G RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (33-44% DOSE) REMARK 900 RELATED ID: 1H5H RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (44-56% DOSE) REMARK 900 RELATED ID: 1H5I RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (56-67% DOSE) REMARK 900 RELATED ID: 1H5J RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (67-78% DOSE) REMARK 900 RELATED ID: 1H5K RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (78-89% DOSE) REMARK 900 RELATED ID: 1H5L RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (89-100% DOSE) REMARK 900 RELATED ID: 1H5M RELATED DB: PDB REMARK 900 X-RAY INDUCED REDUCTION OF HORSERADISH REMARK 900 PEROXIDASE C1A COMPOUND III (0-100% DOSE) REMARK 900 RELATED ID: 1HCH RELATED DB: PDB REMARK 900 HORSERADISH PEROXIDASE COMPOUND I REMARK 900 RELATED ID: 1KZM RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (R38S/H42E) OF REMARK 900 RECOMBINANTHORSERADISH PEROXIDASE C (HRP C). REMARK 900 RELATED ID: 2ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE COMPLEX WITH REMARK 900 BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 3ATJ RELATED DB: PDB REMARK 900 HEME LIGAND MUTANT OF RECOMBINANT HORSERADISH REMARK 900 PEROXIDASE IN COMPLEX WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 4ATJ RELATED DB: PDB REMARK 900 DISTAL HEME POCKET MUTANT (H42E) OF REMARK 900 RECOMBINANT HORSERADISHPEROXIDASE IN COMPLEX REMARK 900 WITH BENZHYDROXAMIC ACID REMARK 900 RELATED ID: 6ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C COMPLEX REMARK 900 WITH FERULIC ACID REMARK 900 RELATED ID: 7ATJ RELATED DB: PDB REMARK 900 RECOMBINANT HORSERADISH PEROXIDASE C1A COMPLEX REMARK 900 WITH CYANIDE AND FERULIC ACID
DBREF 1GWU A 0 0 PDB 1GWU 1GWU 0 0 DBREF 1GWU A 1 308 UNP P00433 PERA_ARMRU 31 338
SEQADV 1GWU GLY A 140 UNP P00433 ALA 170 ENGINEERED MUTATION
SEQRES 1 A 309 MET GLN LEU THR PRO THR PHE TYR ASP ASN SER CYS PRO SEQRES 2 A 309 ASN VAL SER ASN ILE VAL ARG ASP THR ILE VAL ASN GLU SEQRES 3 A 309 LEU ARG SER ASP PRO ARG ILE ALA ALA SER ILE LEU ARG SEQRES 4 A 309 LEU HIS PHE HIS ASP CYS PHE VAL ASN GLY CYS ASP ALA SEQRES 5 A 309 SER ILE LEU LEU ASP ASN THR THR SER PHE ARG THR GLU SEQRES 6 A 309 LYS ASP ALA PHE GLY ASN ALA ASN SER ALA ARG GLY PHE SEQRES 7 A 309 PRO VAL ILE ASP ARG MET LYS ALA ALA VAL GLU SER ALA SEQRES 8 A 309 CYS PRO ARG THR VAL SER CYS ALA ASP LEU LEU THR ILE SEQRES 9 A 309 ALA ALA GLN GLN SER VAL THR LEU ALA GLY GLY PRO SER SEQRES 10 A 309 TRP ARG VAL PRO LEU GLY ARG ARG ASP SER LEU GLN ALA SEQRES 11 A 309 PHE LEU ASP LEU ALA ASN ALA ASN LEU PRO GLY PRO PHE SEQRES 12 A 309 PHE THR LEU PRO GLN LEU LYS ASP SER PHE ARG ASN VAL SEQRES 13 A 309 GLY LEU ASN ARG SER SER ASP LEU VAL ALA LEU SER GLY SEQRES 14 A 309 GLY HIS THR PHE GLY LYS ASN GLN CYS ARG PHE ILE MET SEQRES 15 A 309 ASP ARG LEU TYR ASN PHE SER ASN THR GLY LEU PRO ASP SEQRES 16 A 309 PRO THR LEU ASN THR THR TYR LEU GLN THR LEU ARG GLY SEQRES 17 A 309 LEU CYS PRO LEU ASN GLY ASN LEU SER ALA LEU VAL ASP SEQRES 18 A 309 PHE ASP LEU ARG THR PRO THR ILE PHE ASP ASN LYS TYR SEQRES 19 A 309 TYR VAL ASN LEU GLU GLU GLN LYS GLY LEU ILE GLN SER SEQRES 20 A 309 ASP GLN GLU LEU PHE SER SER PRO ASN ALA THR ASP THR SEQRES 21 A 309 ILE PRO LEU VAL ARG SER PHE ALA ASN SER THR GLN THR SEQRES 22 A 309 PHE PHE ASN ALA PHE VAL GLU ALA MET ASP ARG MET GLY SEQRES 23 A 309 ASN ILE THR PRO LEU THR GLY THR GLN GLY GLN ILE ARG SEQRES 24 A 309 LEU ASN CYS ARG VAL VAL ASN SER ASN SER
HET NA A 503 1 HET CA A1307 1 HET CA A1308 1 HET ACT A1309 4 HET ACT A1310 4 HET HEM A1306 43
HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETSYN HEM [DIHYDROGEN 3,7,12,17-TETRAMETHYL-8,13- HETSYN 2 HEM DIVINYL-2,18-PORPHINEDIPROPIONATO(2-)]IRON
FORMUL 2 NA NA 1+ FORMUL 3 CA 2(CA 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HEM C34 H32 FE N4 O4 FORMUL 8 HOH *534(H2 O1)
HELIX 1 1 ASN A 13 ASP A 29 1 17 HELIX 2 2 ARG A 31 PHE A 45 1 15 HELIX 3 3 ALA A 51 LEU A 55 5 5 HELIX 4 4 THR A 63 ALA A 67 5 5 HELIX 5 5 GLY A 76 CYS A 91 1 16 HELIX 6 6 SER A 96 ALA A 112 1 17 HELIX 7 7 PHE A 130 LEU A 138 1 9 HELIX 8 8 THR A 144 VAL A 155 1 12 HELIX 9 9 ARG A 159 GLY A 168 1 10 HELIX 10 10 GLY A 169 PHE A 172 5 4 HELIX 11 11 ILE A 180 ASN A 186 1 7 HELIX 12 12 PHE A 187 THR A 190 5 4 HELIX 13 13 ASN A 198 CYS A 209 1 12 HELIX 14 14 ASN A 231 GLU A 239 1 9 HELIX 15 15 ILE A 244 SER A 253 1 10 HELIX 16 16 ASP A 258 SER A 269 1 12 HELIX 17 17 SER A 269 GLY A 285 1 17
SHEET 1 AA 2 LYS A 174 GLN A 176 0 SHEET 2 AA 2 LEU A 218 ASP A 220 -1 O VAL A 219 N ASN A 175
SSBOND 1 CYS A 11 CYS A 91 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 91 1555 1555 2.05 SSBOND 3 CYS A 44 CYS A 49 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 301 1555 1555 2.05 SSBOND 5 CYS A 177 CYS A 209 1555 1555 2.02
LINK NE2 HIS A 170 FE HEM A1306 1555 1555 1.93 LINK NA NA A 503 O HOH A2501 1555 1555 2.04 LINK NA NA A 503 O HOH A2496 1555 1555 2.06 LINK NA NA A 503 O HOH A2504 1555 1555 1.85 LINK NA NA A 503 O HOH A2145 1555 4556 2.50 LINK NA NA A 503 O HOH A2129 1555 1555 2.01 LINK NA NA A 503 O HOH A2497 1555 1555 1.96 LINK CA CA A1307 OG SER A 52 1555 1555 2.42 LINK CA CA A1307 O ASP A 43 1555 1555 2.39 LINK CA CA A1307 O GLY A 48 1555 1555 2.50 LINK CA CA A1307 OD1 ASP A 50 1555 1555 2.34 LINK CA CA A1307 O VAL A 46 1555 1555 2.31 LINK CA CA A1307 OD1 ASP A 43 1555 1555 2.36 LINK CA CA A1307 O HOH A2163 1555 1555 2.41 LINK CA CA A1308 OD1 ASP A 222 1555 1555 2.24 LINK CA CA A1308 O ILE A 228 1555 1555 2.35 LINK CA CA A1308 OD2 ASP A 230 1555 1555 2.49 LINK CA CA A1308 OG1 THR A 171 1555 1555 2.47 LINK CA CA A1308 OG1 THR A 225 1555 1555 2.35 LINK CA CA A1308 O THR A 171 1555 1555 2.32 LINK CA CA A1308 O THR A 225 1555 1555 2.42
SITE 1 AC1 6 HOH A2129 HOH A2145 HOH A2496 HOH A2497 SITE 2 AC1 6 HOH A2501 HOH A2504 SITE 1 AC2 6 ASP A 43 VAL A 46 GLY A 48 ASP A 50 SITE 2 AC2 6 SER A 52 HOH A2163 SITE 1 AC3 5 THR A 171 ASP A 222 THR A 225 ILE A 228 SITE 2 AC3 5 ASP A 230 SITE 1 AC4 5 ARG A 38 PHE A 41 HIS A 42 PRO A 139 SITE 2 AC4 5 HEM A1306 SITE 1 AC5 6 LYS A 65 PHE A 77 ARG A 302 HOH A2532 SITE 2 AC5 6 HOH A2533 HOH A2534 SITE 1 AC6 27 ARG A 31 ALA A 34 SER A 35 ARG A 38 SITE 2 AC6 27 PHE A 41 SER A 73 ARG A 75 PRO A 139 SITE 3 AC6 27 GLY A 140 PRO A 141 PHE A 152 LEU A 166 SITE 4 AC6 27 SER A 167 GLY A 169 HIS A 170 PHE A 172 SITE 5 AC6 27 GLY A 173 LYS A 174 ASN A 175 GLN A 176 SITE 6 AC6 27 PHE A 179 PHE A 221 SER A 246 ACT A1309 SITE 7 AC6 27 HOH A2346 HOH A2530 HOH A2531
CRYST1 40.037 66.806 116.356 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.024977 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014969 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008594 0.00000