10 20 30 40 50 60 70 80 1GRC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE(FORMYL) 21-JUL-92 1GRC
TITLE CRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE TITLE 2 TRANSFORMYLASE FROM ESCHERICHIA COLI AT 3.0 ANGSTROMS TITLE 3 RESOLUTION: A TARGET ENZYME FOR CHEMOTHERAPY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.2.2; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS TRANSFERASE(FORMYL)
EXPDTA X-RAY DIFFRACTION
AUTHOR P.CHEN,I.A.WILSON
REVDAT 3 24-FEB-09 1GRC 1 VERSN REVDAT 2 01-APR-03 1GRC 1 JRNL REVDAT 1 31-OCT-93 1GRC 0
JRNL AUTH P.CHEN,U.SCHULZE-GAHMEN,E.A.STURA,J.INGLESE, JRNL AUTH 2 D.L.JOHNSON,A.MAROLEWSKI,S.J.BENKOVIC,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF GLYCINAMIDE RIBONUCLEOTIDE JRNL TITL 2 TRANSFORMYLASE FROM ESCHERICHIA COLI AT 3.0 A JRNL TITL 3 RESOLUTION. A TARGET ENZYME FOR CHEMOTHERAPY. JRNL REF J.MOL.BIOL. V. 227 283 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1522592 JRNL DOI 10.1016/0022-2836(92)90698-J
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.A.STURA,D.L.JOHNSON,J.INGLESE,J.M.SMITH, REMARK 1 AUTH 2 S.J.BENKOVIC,I.A.WILSON REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC INVESTIGATIONS OF REMARK 1 TITL 2 GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE IN REMARK 1 TITL 3 ESCHERICHIA COLI K12 REMARK 1 REF J.BIOL.CHEM. V. 264 9703 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.M.SMITH,H.A.DAUM III REMARK 1 TITL IDENTIFICATION AND NUCLEOTIDE SEQUENCE OF A GENE REMARK 1 TITL 2 ENCODING 5'-PHOSPHORIBOSYL-GLYCINAMIDE REMARK 1 TITL 3 TRANSFORMYLASE IN ESCHERICHIA COLI K12 REMARK 1 REF J.BIOL.CHEM. V. 262 10565 1987 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2955 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 3.55 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GRC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 70.25000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 70.25000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX 1* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN REMARK 300 APPLIED TO CHAIN *A*. (KABSCH ROTATION MATRIX) REMARK 300 REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX 2* RECORDS BELOW REMARK 300 WILL YIELD APPROXIMATE COORDINATES FOR CHAIN *A* WHEN REMARK 300 APPLIED TO CHAIN *B*. (KABSCH ROTATION MATRIX)
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 114 REMARK 465 TYR A 115 REMARK 465 PRO A 116 REMARK 465 GLY A 117 REMARK 465 LEU A 118 REMARK 465 HIS A 119 REMARK 465 THR A 120 REMARK 465 HIS A 121 REMARK 465 ARG A 122 REMARK 465 GLN A 123 REMARK 465 ALA A 124 REMARK 465 LEU A 125 REMARK 465 GLU A 126 REMARK 465 ASN A 127 REMARK 465 GLY A 128 REMARK 465 ALA A 210 REMARK 465 ASP A 211 REMARK 465 GLU A 212 REMARK 465 TYR B 115 REMARK 465 PRO B 116 REMARK 465 GLY B 117 REMARK 465 LEU B 118 REMARK 465 HIS B 119 REMARK 465 THR B 120 REMARK 465 HIS B 121 REMARK 465 ARG B 122 REMARK 465 GLN B 123 REMARK 465 ALA B 124 REMARK 465 LEU B 125 REMARK 465 GLU B 126 REMARK 465 ASN B 127 REMARK 465 GLY B 128 REMARK 465 ASP B 129 REMARK 465 GLU B 130 REMARK 465 GLU B 131 REMARK 465 ALA B 210 REMARK 465 ASP B 211 REMARK 465 GLU B 212
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 113 CA C O CB CG CD REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 LYS B 114 CA C O CB CG CD CE REMARK 470 LYS B 114 NZ REMARK 470 HIS B 132 CG ND1 CD2 CE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 73 NE2 HIS A 73 CD2 -0.067 REMARK 500 HIS A 99 NE2 HIS A 99 CD2 -0.076 REMARK 500 HIS A 137 NE2 HIS A 137 CD2 -0.069 REMARK 500 HIS B 54 NE2 HIS B 54 CD2 -0.068 REMARK 500 HIS B 73 NE2 HIS B 73 CD2 -0.079 REMARK 500 HIS B 99 NE2 HIS B 99 CD2 -0.071 REMARK 500 HIS B 108 NE2 HIS B 108 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 HIS A 54 CB - CG - CD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 MET A 89 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 TYR A 100 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 THR A 140 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 LYS A 153 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 TRP A 183 CD1 - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 TRP A 183 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TRP A 197 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP A 197 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = 13.0 DEGREES REMARK 500 THR B 23 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 HIS B 54 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG B 90 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 103 CG - CD - NE ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG B 168 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR B 177 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP B 183 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 183 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP B 197 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 197 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR B 208 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 109 2.96 -60.76 REMARK 500 ASN A 194 29.90 42.07 REMARK 500 PRO A 205 4.95 -57.39 REMARK 500 SER B 8 -9.72 -146.14 REMARK 500 THR B 23 9.28 -63.76 REMARK 500 ALA B 40 106.02 -59.06 REMARK 500 ALA B 58 -58.69 -24.14 REMARK 500 LEU B 85 49.79 -102.95 REMARK 500 ALA B 86 86.16 -68.76 REMARK 500 ARG B 103 29.13 -157.33 REMARK 500 PRO B 109 -5.52 -44.09 REMARK 500 GLU B 162 -54.70 -24.04 REMARK 500 PRO B 205 -25.37 -30.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 100 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301
DBREF 1GRC A 1 212 UNP P08179 PUR3_ECOLI 1 212 DBREF 1GRC B 1 212 UNP P08179 PUR3_ECOLI 1 212
SEQRES 1 A 212 MET ASN ILE VAL VAL LEU ILE SER GLY ASN GLY SER ASN SEQRES 2 A 212 LEU GLN ALA ILE ILE ASP ALA CYS LYS THR ASN LYS ILE SEQRES 3 A 212 LYS GLY THR VAL ARG ALA VAL PHE SER ASN LYS ALA ASP SEQRES 4 A 212 ALA PHE GLY LEU GLU ARG ALA ARG GLN ALA GLY ILE ALA SEQRES 5 A 212 THR HIS THR LEU ILE ALA SER ALA PHE ASP SER ARG GLU SEQRES 6 A 212 ALA TYR ASP ARG GLU LEU ILE HIS GLU ILE ASP MET TYR SEQRES 7 A 212 ALA PRO ASP VAL VAL VAL LEU ALA GLY PHE MET ARG ILE SEQRES 8 A 212 LEU SER PRO ALA PHE VAL SER HIS TYR ALA GLY ARG LEU SEQRES 9 A 212 LEU ASN ILE HIS PRO SER LEU LEU PRO LYS TYR PRO GLY SEQRES 10 A 212 LEU HIS THR HIS ARG GLN ALA LEU GLU ASN GLY ASP GLU SEQRES 11 A 212 GLU HIS GLY THR SER VAL HIS PHE VAL THR ASP GLU LEU SEQRES 12 A 212 ASP GLY GLY PRO VAL ILE LEU GLN ALA LYS VAL PRO VAL SEQRES 13 A 212 PHE ALA GLY ASP SER GLU ASP ASP ILE THR ALA ARG VAL SEQRES 14 A 212 GLN THR GLN GLU HIS ALA ILE TYR PRO LEU VAL ILE SER SEQRES 15 A 212 TRP PHE ALA ASP GLY ARG LEU LYS MET HIS GLU ASN ALA SEQRES 16 A 212 ALA TRP LEU ASP GLY GLN ARG LEU PRO PRO GLN GLY TYR SEQRES 17 A 212 ALA ALA ASP GLU SEQRES 1 B 212 MET ASN ILE VAL VAL LEU ILE SER GLY ASN GLY SER ASN SEQRES 2 B 212 LEU GLN ALA ILE ILE ASP ALA CYS LYS THR ASN LYS ILE SEQRES 3 B 212 LYS GLY THR VAL ARG ALA VAL PHE SER ASN LYS ALA ASP SEQRES 4 B 212 ALA PHE GLY LEU GLU ARG ALA ARG GLN ALA GLY ILE ALA SEQRES 5 B 212 THR HIS THR LEU ILE ALA SER ALA PHE ASP SER ARG GLU SEQRES 6 B 212 ALA TYR ASP ARG GLU LEU ILE HIS GLU ILE ASP MET TYR SEQRES 7 B 212 ALA PRO ASP VAL VAL VAL LEU ALA GLY PHE MET ARG ILE SEQRES 8 B 212 LEU SER PRO ALA PHE VAL SER HIS TYR ALA GLY ARG LEU SEQRES 9 B 212 LEU ASN ILE HIS PRO SER LEU LEU PRO LYS TYR PRO GLY SEQRES 10 B 212 LEU HIS THR HIS ARG GLN ALA LEU GLU ASN GLY ASP GLU SEQRES 11 B 212 GLU HIS GLY THR SER VAL HIS PHE VAL THR ASP GLU LEU SEQRES 12 B 212 ASP GLY GLY PRO VAL ILE LEU GLN ALA LYS VAL PRO VAL SEQRES 13 B 212 PHE ALA GLY ASP SER GLU ASP ASP ILE THR ALA ARG VAL SEQRES 14 B 212 GLN THR GLN GLU HIS ALA ILE TYR PRO LEU VAL ILE SER SEQRES 15 B 212 TRP PHE ALA ASP GLY ARG LEU LYS MET HIS GLU ASN ALA SEQRES 16 B 212 ALA TRP LEU ASP GLY GLN ARG LEU PRO PRO GLN GLY TYR SEQRES 17 B 212 ALA ALA ASP GLU
HET PO4 A 301 5 HET PO4 B 301 5
HETNAM PO4 PHOSPHATE ION
FORMUL 3 PO4 2(O4 P 3-)
HELIX 1 1 SER A 12 LYS A 22 1MOLECULE A 11 HELIX 2 2 PHE A 41 ALA A 49 1MOLECULE A 9 HELIX 3 3 ALA A 58 ALA A 60 6MOLECULE A 3 HELIX 4 4 ARG A 64 ASP A 76 1MOLECULE A 13 HELIX 5 5 PRO A 94 TYR A 100 1MOLECULE A 7 HELIX 6 6 GLU A 162 ALA A 185 1MOLECULE A 24 HELIX 7 7 SER B 12 LYS B 22 1MOLECULE B 11 HELIX 8 8 PHE B 41 ALA B 49 1MOLECULE B 9 HELIX 9 9 ALA B 58 ALA B 60 6MOLECULE B 3 HELIX 10 10 ARG B 64 ASP B 76 1MOLECULE B 13 HELIX 11 11 PRO B 94 TYR B 100 1MOLECULE B 7 HELIX 12 12 GLU B 162 ALA B 185 1MOLECULE B 24
SHEET 1 A1 7 ALA A 52 THR A 55 0 SHEET 2 A1 7 THR A 29 SER A 35 1 N VAL A 33 O ALA A 52 SHEET 3 A1 7 ASN A 2 ILE A 7 1 N ILE A 3 O THR A 29 SHEET 4 A1 7 VAL A 82 LEU A 85 1 N VAL A 82 O ASN A 2 SHEET 5 A1 7 LEU A 104 HIS A 108 1 N LEU A 105 O VAL A 83 SHEET 6 A1 7 HIS A 132 PHE A 138 -1 N SER A 135 O HIS A 108 SHEET 7 A1 7 VAL A 148 VAL A 154 -1 N VAL A 148 O VAL A 136 SHEET 1 B1 3 LEU A 189 HIS A 192 0 SHEET 2 B1 3 ALA A 195 LEU A 198 -1 N ALA A 195 O HIS A 192 SHEET 3 B1 3 GLN A 201 ARG A 202 -1 N GLN A 201 O LEU A 198 SHEET 1 A2 7 ALA B 52 THR B 55 0 SHEET 2 A2 7 THR B 29 SER B 35 1 N VAL B 33 O ALA B 52 SHEET 3 A2 7 ASN B 2 ILE B 7 1 N ILE B 3 O THR B 29 SHEET 4 A2 7 VAL B 82 VAL B 84 1 N VAL B 82 O ASN B 2 SHEET 5 A2 7 LEU B 104 HIS B 108 1 N LEU B 105 O VAL B 83 SHEET 6 A2 7 GLY B 133 PHE B 138 -1 N SER B 135 O HIS B 108 SHEET 7 A2 7 VAL B 148 LYS B 153 -1 O LEU B 150 N VAL B 136 SHEET 1 B2 3 LEU B 189 HIS B 192 0 SHEET 2 B2 3 ALA B 195 LEU B 198 -1 N ALA B 195 O HIS B 192 SHEET 3 B2 3 GLN B 201 ARG B 202 -1 N GLN B 201 O LEU B 198
CISPEP 1 LEU B 112 PRO B 113 0 7.85
SITE 1 AC1 5 ASN A 10 GLY A 11 SER A 12 ASN A 13 SITE 2 AC1 5 ALA A 86 SITE 1 AC2 4 GLY B 11 SER B 12 ASN B 13 GLN B 170
CRYST1 140.500 98.200 103.300 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007117 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010183 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009681 0.00000
MTRIX1 1 -0.197721 0.401817 0.894119 6.56252 1
MTRIX2 1 0.355059 -0.820833 0.447398 125.12114 1
MTRIX3 1 0.913695 0.405925 0.019627 -58.63620 1
MTRIX1 2 -0.197721 0.355059 0.913695 10.44778 1
MTRIX2 2 0.401817 -0.820833 0.405925 123.86861 1
MTRIX3 2 0.894119 0.447398 0.019627 -60.69580 1