10 20 30 40 50 60 70 80 1GPS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT TOXIN 29-JUL-92 1GPS
TITLE SOLUTION STRUCTURE OF GAMMA 1-H AND GAMMA 1-P THIONINS FROM TITLE 2 BARLEY AND WHEAT ENDOSPERM DETERMINED BY 1H-NMR: A TITLE 3 STRUCTURAL MOTIF COMMON TO TOXIC ARTHROPOD PROTEINS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-1-P THIONIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM TURGIDUM; SOURCE 3 ORGANISM_TAXID: 4571
KEYWDS PLANT TOXIN
EXPDTA SOLUTION NMR
NUMMDL 8
AUTHOR M.BRUIX,M.A.JIMENEZ,J.SANTORO,C.GONZALEZ,F.J.COLILLA, AUTHOR 2 E.MENDEZ,M.RICO
REVDAT 2 24-FEB-09 1GPS 1 VERSN REVDAT 1 31-OCT-93 1GPS 0
JRNL AUTH M.BRUIX,M.A.JIMENEZ,J.SANTORO,C.GONZALEZ, JRNL AUTH 2 F.J.COLILLA,E.MENDEZ,M.RICO JRNL TITL SOLUTION STRUCTURE OF GAMMA 1-H AND GAMMA 1-P JRNL TITL 2 THIONINS FROM BARLEY AND WHEAT ENDOSPERM JRNL TITL 3 DETERMINED BY 1H-NMR: A STRUCTURAL MOTIF COMMON TO JRNL TITL 4 TOXIC ARTHROPOD PROTEINS. JRNL REF BIOCHEMISTRY V. 32 715 1993 JRNL REFN ISSN 0006-2960 JRNL PMID 8380707 JRNL DOI 10.1021/BI00053A041
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GPS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 27 CD GLU A 27 OE2 0.066 REMARK 500 2 GLU A 27 CD GLU A 27 OE2 0.066 REMARK 500 8 GLU A 27 CD GLU A 27 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 3 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 4 ARG A 4 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 5 LYS A 1 CD - CE - NZ ANGL. DEV. = -16.3 DEGREES REMARK 500 6 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 6 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 7 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 6 CG - CD - NE ANGL. DEV. = -16.2 DEGREES REMARK 500 7 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 7 PHE A 38 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 7 LYS A 42 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 8 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 73.70 -118.85 REMARK 500 1 SER A 7 101.04 -53.90 REMARK 500 1 MET A 15 -33.88 64.63 REMARK 500 1 PRO A 37 35.36 -76.63 REMARK 500 1 ARG A 39 -62.95 -96.48 REMARK 500 2 ALA A 8 30.99 -81.98 REMARK 500 2 CYS A 14 78.91 -107.05 REMARK 500 2 PHE A 38 44.87 -82.10 REMARK 500 3 ARG A 6 150.09 -45.34 REMARK 500 3 ALA A 8 39.15 -68.42 REMARK 500 3 PRO A 13 100.61 -56.79 REMARK 500 3 SER A 16 42.69 -93.16 REMARK 500 3 ASN A 17 -58.75 -9.03 REMARK 500 3 ASN A 33 -140.43 -145.08 REMARK 500 4 SER A 7 102.83 -50.18 REMARK 500 4 PHE A 38 37.31 -74.34 REMARK 500 5 ARG A 5 -152.95 -139.07 REMARK 500 5 SER A 7 6.23 -62.49 REMARK 500 5 ALA A 8 -74.77 54.37 REMARK 500 5 PHE A 38 46.97 -79.61 REMARK 500 6 ALA A 8 -47.13 70.30 REMARK 500 6 PHE A 38 -22.27 69.39 REMARK 500 6 ARG A 39 27.29 -76.85 REMARK 500 7 PHE A 10 59.53 -99.16 REMARK 500 7 PRO A 13 99.54 -53.90 REMARK 500 7 PHE A 38 44.16 -78.65 REMARK 500 8 ARG A 4 58.95 -103.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 6 0.10 SIDE_CHAIN REMARK 500 3 ARG A 6 0.09 SIDE_CHAIN REMARK 500 4 ARG A 40 0.10 SIDE_CHAIN REMARK 500 5 ARG A 39 0.14 SIDE_CHAIN REMARK 500 7 ARG A 40 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 CYS A 3 11.20 REMARK 500 2 CYS A 3 10.54 REMARK 500 2 PRO A 13 -11.02 REMARK 500 4 TRP A 29 -10.61 REMARK 500 6 LYS A 11 10.78 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1GPS A 1 47 UNP P20158 THG1_WHEAT 1 47
SEQRES 1 A 47 LYS ILE CYS ARG ARG ARG SER ALA GLY PHE LYS GLY PRO SEQRES 2 A 47 CYS MET SER ASN LYS ASN CYS ALA GLN VAL CYS GLN GLN SEQRES 3 A 47 GLU GLY TRP GLY GLY GLY ASN CYS ASP GLY PRO PHE ARG SEQRES 4 A 47 ARG CYS LYS CYS ILE ARG GLN CYS
HELIX 1 H1 SER A 16 GLY A 28 1 13
SHEET 1 S1 3 LYS A 1 ARG A 6 0 SHEET 2 S1 3 ARG A 39 CYS A 47 -1 N CYS A 43 O ARG A 5 SHEET 3 S1 3 GLY A 31 CYS A 34 -1 O GLY A 31 N ILE A 44
SSBOND 1 CYS A 3 CYS A 47 1555 1555 2.04 SSBOND 2 CYS A 14 CYS A 34 1555 1555 2.04 SSBOND 3 CYS A 20 CYS A 41 1555 1555 2.04 SSBOND 4 CYS A 24 CYS A 43 1555 1555 2.04
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000