10 20 30 40 50 60 70 80 1GPD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 01-JUL-75 1GPD
TITLE STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL STRUCTURE OF LOBSTER D- TITLE 2 GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: G, R; COMPND 4 EC: 1.2.1.12; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMARUS AMERICANUS; SOURCE 3 ORGANISM_COMMON: AMERICAN LOBSTER; SOURCE 4 ORGANISM_TAXID: 6706
KEYWDS OXIDO-REDUCTASE(ALDEHYDE/DONR,NAD/ACCPT), OXIDO-REDUCTASE(ALDEHYDE- KEYWDS 2 DONR,NAD-ACCPT) COMPLEX, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.MORAS,K.W.OLSEN,M.N.SABESAN,M.BUEHNER,G.C.FORD,M.G.ROSSMANN
REVDAT 13 29-OCT-14 1GPD 1 LINK REVDAT 12 13-JUL-11 1GPD 1 VERSN REVDAT 11 24-FEB-09 1GPD 1 VERSN REVDAT 10 15-JUL-92 1GPD 1 COMPND REVDAT 9 30-SEP-83 1GPD 1 REVDAT REVDAT 8 01-MAR-82 1GPD 1 REMARK REVDAT 7 20-APR-81 1GPD 3 SEQRES ATOM REVDAT 6 31-DEC-80 1GPD 1 REMARK REVDAT 5 01-OCT-80 1GPD 1 REMARK REVDAT 4 05-FEB-79 1GPD 1 SITE REVDAT 3 20-JUL-78 1GPD 2 CONECT REVDAT 2 01-NOV-77 1GPD 1 COMPND SOURCE AUTHOR JRNL REVDAT 2 2 1 REMARK FORMUL REVDAT 1 17-FEB-77 1GPD 0
JRNL AUTH D.MORAS,K.W.OLSEN,M.N.SABESAN,M.BUEHNER,G.C.FORD, JRNL AUTH 2 M.G.ROSSMANN JRNL TITL STUDIES OF ASYMMETRY IN THE THREE-DIMENSIONAL STRUCTURE OF JRNL TITL 2 LOBSTER D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE. JRNL REF J.BIOL.CHEM. V. 250 9137 1975 JRNL REFN ISSN 0021-9258 JRNL PMID 127793
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.W.OLSEN,R.M.GARAVITO,M.N.SABESAN,M.G.ROSSMANN REMARK 1 TITL ANION BINDING SITES IN THE ACTIVE CENTER OF REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 107 571 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH K.W.OLSEN,R.M.GARAVITO,M.N.SABESAN,M.G.ROSSMANN REMARK 1 TITL STUDIES ON COENZYME BINDING TO GLYCERALDEHYDE-3-PHOSPHATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 107 577 1976 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH M.G.ROSSMANN REMARK 1 TITL A COMPARISON OF THE BINDING AND FUNCTION OF NAD WITH RESPECT REMARK 1 TITL 2 TO LACTATE DEHYDROGENASE AND GLYCERALDEHYDE-3-PHOSPHATE REMARK 1 TITL 3 DEHYDROGENASE REMARK 1 EDIT M.SUNDARALINGAM, S.T.RAO REMARK 1 REF STRUCTURE AND CONFORMATION 353 1975 REMARK 1 REF 2 OF NUCLEIC ACIDS AND REMARK 1 REF 3 PROTEIN-NUCLEIC ACID REMARK 1 REF 4 INTERACTIONS : PROCEEDINGS REMARK 1 REF 5 OF THE FOURTH ANNUAL HARRY REMARK 1 REF 6 STEENBOCK SYMPOSIUM, JUNE REMARK 1 REF 7 16-19, 1974, MADISON, REMARK 1 REF 8 WISCONSIN REMARK 1 PUBL UNIVERSITY PARK PRESS,BALTIMORE,MD. REMARK 1 REFN REMARK 1 REFERENCE 4 REMARK 1 AUTH K.W.OLSEN,D.MORAS,M.G.ROSSMANN,J.I.HARRIS REMARK 1 TITL SEQUENCE VARIABILITY AND STRUCTURE OF REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.BIOL.CHEM. V. 250 9313 1975 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 5 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF D-GLYCERALDEHYDE-3-PHOSPHATE REMARK 1 TITL 2 DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 90 25 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL STRUCTURE DETERMINATION OF CRYSTALLINE LOBSTER REMARK 1 TITL 2 D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE REMARK 1 REF J.MOL.BIOL. V. 82 563 1974 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH M.BUEHNER,G.C.FORD,D.MORAS,K.W.OLSEN,M.G.ROSSMANN REMARK 1 TITL D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE,THREE DIMENSIONAL REMARK 1 TITL 2 STRUCTURE AND EVOLUTIONARY SIGNIFICANCE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 70 3052 1973 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 8 REMARK 1 AUTH P.ARGOS,G.C.FORD,M.G.ROSSMANN REMARK 1 TITL AN APPLICATION OF THE MOLECULAR REPLACEMENT TECHNIQUE IN REMARK 1 TITL 2 DIRECT SPACE TO A KNOWN PROTEIN STRUCTURE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.A V. 31 499 1975 REMARK 1 REFN ISSN 0108-7673 REMARK 1 REFERENCE 9 REMARK 1 EDIT R.J.FELDMANN REMARK 1 REF ATLAS OF MACROMOLECULAR 347 1976 REMARK 1 REF 2 STRUCTURE ON MICROFICHE REMARK 1 PUBL TRACOR JITCO INC.,ROCKVILLE,MD. REMARK 1 REFN REMARK 1 REFERENCE 10 REMARK 1 EDIT M.O.DAYHOFF REMARK 1 REF ATLAS OF PROTEIN SEQUENCE V. 5 75 1976 REMARK 1 REF 2 AND STRUCTURE,SUPPLEMENT 2 REMARK 1 PUBL NATIONAL BIOMEDICAL RESEARCH FOUNDATION, SILVER SPRING,MD. REMARK 1 REFN ISSN 0-912466-05-7
REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GPD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 285 REMARK 285 THE ENTRY COORDINATES REMARK 285 ARE NOT PRESENTED IN THE STANDARD CRYSTAL FRAME.
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.505006 0.106575 -0.856530 -27.93077 REMARK 290 SMTRY2 2 0.106613 -0.977046 -0.184482 57.26995 REMARK 290 SMTRY3 2 -0.856488 -0.184406 0.482051 -55.86269 REMARK 290 SMTRY1 3 -0.324519 0.808379 0.491009 60.48194 REMARK 290 SMTRY2 3 0.808553 -0.032369 0.587739 52.70278 REMARK 290 SMTRY3 3 0.490970 0.587566 -0.643112 -5.33666 REMARK 290 SMTRY1 4 -0.170476 -0.914953 0.365521 -7.57484 REMARK 290 SMTRY2 4 -0.915166 0.009415 -0.403258 101.33028 REMARK 290 SMTRY3 4 0.365517 -0.403160 -0.838939 8.23058 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 R 335 REMARK 610 PO4 R 336 REMARK 610 PO4 R 337 REMARK 610 PO4 R 338
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET SUBSTRUCTURE OF THE CATALYTIC DOMAIN IS REMARK 700 BIFURCATED. TO REPRESENT THIS FEATURE REDUNDANT SHEETS REMARK 700 ARE DEFINED FOR EACH OF THE TWO SUBUNITS. STRANDS 1-7 OF REMARK 700 SHEETS GC1 AND RC1 ARE IDENTICAL TO STRANDS 1-7 OF SHEETS REMARK 700 GC2 AND RC2.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ABG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE ADENINE BASE OF REMARK 800 THE COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: ABR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE ADENINE BASE OF REMARK 800 THE COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: ARG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE ADENOSINE RIBOSE REMARK 800 OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: ARR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE ADENOSINE RIBOSE REMARK 800 OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: APG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE PHOSPHATE OF THE REMARK 800 ADENOSINE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: APR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE PHOSPHATE OF THE REMARK 800 ADENOSINE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NPG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE PHOSPHATE OF THE REMARK 800 NICOTINAMIDE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NPR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE PHOSPHATE OF THE REMARK 800 NICOTINAMIDE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NRG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE RIBOSE OF THE REMARK 800 NICOTINAMIDE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NRR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE RIBOSE OF THE REMARK 800 NICOTINAMIDE NUCLEOTIDE OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NBG REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE NICOTINAMIDE BASE REMARK 800 OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: NBR REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: RESIDUES INTERACTING WITH THE NICOTINAMIDE BASE REMARK 800 OF THE NAD COFACTOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD G 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD R 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 R 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 R 338
DBREF 1GPD G 1 334 UNP P00357 G3P_HOMAM 1 333 DBREF 1GPD R 1 334 UNP P00357 G3P_HOMAM 1 333
SEQRES 1 G 334 ACE SER LYS ILE GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 G 334 ARG LEU VAL LEU ARG ALA ALA LEU SER CYS GLY ALA GLN SEQRES 3 G 334 VAL VAL ALA VAL ASN ASP PRO PHE ILE ALA LEU GLU TYR SEQRES 4 G 334 MET VAL TYR MET PHE LYS TYR ASP SER THR HIS GLY VAL SEQRES 5 G 334 PHE LYS GLY GLU VAL LYS MET GLU ASP GLY ALA LEU VAL SEQRES 6 G 334 VAL ASP GLY LYS LYS ILE THR VAL PHE ASN GLU MET LYS SEQRES 7 G 334 PRO GLU ASN ILE PRO TRP SER LYS ALA GLY ALA GLU TYR SEQRES 8 G 334 ILE VAL GLU SER THR GLY VAL PHE THR THR ILE GLU LYS SEQRES 9 G 334 ALA SER ALA HIS PHE LYS GLY GLY ALA LYS LYS VAL VAL SEQRES 10 G 334 ILE SER ALA PRO SER ALA ASP ALA PRO MET PHE VAL CYS SEQRES 11 G 334 GLY VAL ASN LEU GLU LYS TYR SER LYS ASP MET THR VAL SEQRES 12 G 334 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 G 334 VAL ALA LYS VAL LEU HIS GLU ASN PHE GLU ILE VAL GLU SEQRES 14 G 334 GLY LEU MET THR THR VAL HIS ALA VAL THR ALA THR GLN SEQRES 15 G 334 LYS THR VAL ASP GLY PRO SER ALA LYS ASP TRP ARG GLY SEQRES 16 G 334 GLY ARG GLY ALA ALA GLN ASN ILE ILE PRO SER SER THR SEQRES 17 G 334 GLY ALA ALA LYS ALA VAL GLY LYS VAL ILE PRO GLU LEU SEQRES 18 G 334 ASP GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO THR SEQRES 19 G 334 PRO ASP VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLY SEQRES 20 G 334 LYS GLU CYS SER TYR ASP ASP ILE LYS ALA ALA MET LYS SEQRES 21 G 334 THR ALA SER GLU GLY PRO LEU GLN GLY PHE LEU GLY TYR SEQRES 22 G 334 THR GLU ASP ASP VAL VAL SER SER ASP PHE ILE GLY ASP SEQRES 23 G 334 ASN ARG SER SER ILE PHE ASP ALA LYS ALA GLY ILE GLN SEQRES 24 G 334 LEU SER LYS THR PHE VAL LYS VAL VAL SER TRP TYR ASP SEQRES 25 G 334 ASN GLU PHE GLY TYR SER GLN ARG VAL ILE ASP LEU LEU SEQRES 26 G 334 LYS HIS MET GLN LYS VAL ASP SER ALA SEQRES 1 R 334 ACE SER LYS ILE GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 R 334 ARG LEU VAL LEU ARG ALA ALA LEU SER CYS GLY ALA GLN SEQRES 3 R 334 VAL VAL ALA VAL ASN ASP PRO PHE ILE ALA LEU GLU TYR SEQRES 4 R 334 MET VAL TYR MET PHE LYS TYR ASP SER THR HIS GLY VAL SEQRES 5 R 334 PHE LYS GLY GLU VAL LYS MET GLU ASP GLY ALA LEU VAL SEQRES 6 R 334 VAL ASP GLY LYS LYS ILE THR VAL PHE ASN GLU MET LYS SEQRES 7 R 334 PRO GLU ASN ILE PRO TRP SER LYS ALA GLY ALA GLU TYR SEQRES 8 R 334 ILE VAL GLU SER THR GLY VAL PHE THR THR ILE GLU LYS SEQRES 9 R 334 ALA SER ALA HIS PHE LYS GLY GLY ALA LYS LYS VAL VAL SEQRES 10 R 334 ILE SER ALA PRO SER ALA ASP ALA PRO MET PHE VAL CYS SEQRES 11 R 334 GLY VAL ASN LEU GLU LYS TYR SER LYS ASP MET THR VAL SEQRES 12 R 334 VAL SER ASN ALA SER CYS THR THR ASN CYS LEU ALA PRO SEQRES 13 R 334 VAL ALA LYS VAL LEU HIS GLU ASN PHE GLU ILE VAL GLU SEQRES 14 R 334 GLY LEU MET THR THR VAL HIS ALA VAL THR ALA THR GLN SEQRES 15 R 334 LYS THR VAL ASP GLY PRO SER ALA LYS ASP TRP ARG GLY SEQRES 16 R 334 GLY ARG GLY ALA ALA GLN ASN ILE ILE PRO SER SER THR SEQRES 17 R 334 GLY ALA ALA LYS ALA VAL GLY LYS VAL ILE PRO GLU LEU SEQRES 18 R 334 ASP GLY LYS LEU THR GLY MET ALA PHE ARG VAL PRO THR SEQRES 19 R 334 PRO ASP VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLY SEQRES 20 R 334 LYS GLU CYS SER TYR ASP ASP ILE LYS ALA ALA MET LYS SEQRES 21 R 334 THR ALA SER GLU GLY PRO LEU GLN GLY PHE LEU GLY TYR SEQRES 22 R 334 THR GLU ASP ASP VAL VAL SER SER ASP PHE ILE GLY ASP SEQRES 23 R 334 ASN ARG SER SER ILE PHE ASP ALA LYS ALA GLY ILE GLN SEQRES 24 R 334 LEU SER LYS THR PHE VAL LYS VAL VAL SER TRP TYR ASP SEQRES 25 R 334 ASN GLU PHE GLY TYR SER GLN ARG VAL ILE ASP LEU LEU SEQRES 26 R 334 LYS HIS MET GLN LYS VAL ASP SER ALA
HET ACE G 0 3 HET ACE R 0 3 HET PO4 R 335 1 HET PO4 R 336 1 HET PO4 R 337 1 HET PO4 R 338 1 HET NAD G 335 44 HET NAD R 339 44
HETNAM ACE ACETYL GROUP HETNAM PO4 PHOSPHATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE
FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 NAD 2(C21 H27 N7 O14 P2)
HELIX 1 B GLY G 9 CYS G 22 1 14 HELIX 2 C ALA G 36 TYR G 46 1 11 HELIX 3 E THR G 101 GLY G 112 1 12 HELIX 4 H4 SER G 148 GLU G 166 1IRREGULAR NEAR RES 154-157 19 HELIX 5 H5 GLY G 209 ILE G 218 1 10 HELIX 6 H6 SER G 251 GLY G 265 1 15 HELIX 7 H7 ASN G 313 ALA G 334 1 22 HELIX 8 B GLY R 9 CYS R 22 1 14 HELIX 9 C ALA R 36 TYR R 46 1 11 HELIX 10 E THR R 101 GLY R 112 1 12 HELIX 11 H4 SER R 148 GLU R 166 1IRREGULAR NEAR RES 154-157 19 HELIX 12 H5 GLY R 209 ILE R 218 1 10 HELIX 13 H6 SER R 251 GLY R 265 1 15 HELIX 14 H7 ASN R 313 ALA R 334 1 22
SHEET 1 GBD 9 GLU G 56 GLU G 60 0 SHEET 2 GBD 9 ALA G 63 ASP G 67 -1 SHEET 3 GBD 9 THR G 72 PHE G 74 -1 SHEET 4 GBD 9 VAL G 27 ASP G 32 1 SHEET 5 GBD 9 LYS G 2 GLY G 7 1 SHEET 6 GBD 9 GLU G 90 SER G 95 1 SHEET 7 GBD 9 LYS G 115 ALA G 120 1 SHEET 8 GBD 9 THR G 142 ALA G 147 1 SHEET 9 GBD 9 PRO G 126 PHE G 128 1 SHEET 1 GC1 8 VAL G 185 LYS G 191 0 SHEET 2 GC1 8 ASP G 192 ARG G 194 -1 SHEET 3 GC1 8 ILE G 204 THR G 208 -1 SHEET 4 GC1 8 LYS G 224 PRO G 233 -1 SHEET 5 GC1 8 VAL G 168 THR G 179 1 SHEET 6 GC1 8 ASP G 236 LEU G 246 -1 SHEET 7 GC1 8 THR G 303 ASP G 312 -1 SHEET 8 GC1 8 GLN G 299 SER G 301 -1 SHEET 1 GC2 9 VAL G 185 LYS G 191 0 SHEET 2 GC2 9 ASP G 192 ARG G 194 -1 SHEET 3 GC2 9 ILE G 204 THR G 208 -1 SHEET 4 GC2 9 LYS G 224 PRO G 233 -1 SHEET 5 GC2 9 VAL G 168 THR G 179 1 SHEET 6 GC2 9 ASP G 236 LEU G 246 -1 SHEET 7 GC2 9 THR G 303 ASP G 312 -1 SHEET 8 GC2 9 SER G 290 ASP G 293 -1 SHEET 9 GC2 9 LEU G 271 TYR G 273 1 SHEET 1 RBD 9 GLU R 56 GLU R 60 0 SHEET 2 RBD 9 ALA R 63 ASP R 67 -1 SHEET 3 RBD 9 THR R 72 PHE R 74 -1 SHEET 4 RBD 9 VAL R 27 ASP R 32 1 SHEET 5 RBD 9 LYS R 2 GLY R 7 1 SHEET 6 RBD 9 GLU R 90 SER R 95 1 SHEET 7 RBD 9 LYS R 115 ALA R 120 1 SHEET 8 RBD 9 THR R 142 ALA R 147 1 SHEET 9 RBD 9 PRO R 126 PHE R 128 1 SHEET 1 RC1 8 VAL R 185 LYS R 191 0 SHEET 2 RC1 8 ASP R 192 ARG R 194 -1 SHEET 3 RC1 8 ILE R 204 THR R 208 -1 SHEET 4 RC1 8 LYS R 224 PRO R 233 -1 SHEET 5 RC1 8 VAL R 168 THR R 179 1 SHEET 6 RC1 8 ASP R 236 LEU R 246 -1 SHEET 7 RC1 8 THR R 303 ASP R 312 -1 SHEET 8 RC1 8 GLN R 299 SER R 301 -1 SHEET 1 RC2 9 VAL R 185 LYS R 191 0 SHEET 2 RC2 9 ASP R 192 ARG R 194 -1 SHEET 3 RC2 9 ILE R 204 THR R 208 -1 SHEET 4 RC2 9 LYS R 224 PRO R 233 -1 SHEET 5 RC2 9 VAL R 168 THR R 179 1 SHEET 6 RC2 9 ASP R 236 LEU R 246 -1 SHEET 7 RC2 9 THR R 303 ASP R 312 -1 SHEET 8 RC2 9 SER R 290 ASP R 293 -1 SHEET 9 RC2 9 LEU R 271 TYR R 273 1
LINK C ACE G 0 N SER G 1 1555 1555 1.32 LINK C ACE R 0 N SER R 1 1555 1555 1.32
SITE 1 ABG 6 ASN G 6 ASN G 31 ASP G 32 PHE G 34 SITE 2 ABG 6 THR G 96 PHE G 99 SITE 1 ABR 6 ASN R 6 ASN R 31 ASP R 32 PHE R 34 SITE 2 ABR 6 THR R 96 PHE R 99 SITE 1 ARG 3 GLY G 7 ASP G 32 PRO R 188 SITE 1 ARR 4 GLY R 7 PHE R 8 ASP R 32 PRO G 188 SITE 1 APG 2 ARG G 10 ALA G 180 SITE 1 APR 2 ARG R 10 ALA R 180 SITE 1 NPG 1 ILE G 11 SITE 1 NPR 1 ILE R 11 SITE 1 NRG 4 THR G 96 GLY G 97 SER G 119 ALA G 120 SITE 1 NRR 4 THR R 96 GLY R 97 SER R 119 ALA R 120 SITE 1 NBG 4 ILE G 11 CYS G 149 ASN G 313 TYR G 317 SITE 1 NBR 4 ILE R 11 CYS R 149 ASN R 313 TYR R 317 SITE 1 AC3 11 GLY G 7 PHE G 8 GLY G 9 ARG G 10 SITE 2 AC3 11 ILE G 11 ASP G 32 PHE G 34 ILE G 35 SITE 3 AC3 11 PHE G 99 SER G 119 GLU G 314 SITE 1 AC4 10 PHE R 8 ARG R 10 ASP R 32 THR R 96 SITE 2 AC4 10 PHE R 99 SER R 119 ALA R 120 CYS R 149 SITE 3 AC4 10 ASN R 313 TYR R 317 SITE 1 AC7 1 THR R 179 SITE 1 AC8 3 THR R 150 THR R 208 GLY R 209
CRYST1 149.000 139.100 80.700 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 -0.004321 0.004766 -0.001904 0.41955
SCALE2 0.004178 0.005000 0.003037 0.16162
SCALE3 0.006168 0.001328 -0.010673 0.12099
MTRIX1 1 1.000000 0.000000 0.000000 0.00000
MTRIX2 1 0.000000 -1.000000 0.000000 0.00000
MTRIX3 1 0.000000 0.000000 -1.000000 0.00000
MTRIX1 2 -1.000000 0.000000 0.000000 0.00000
MTRIX2 2 0.000000 1.000000 0.000000 0.00000
MTRIX3 2 0.000000 0.000000 -1.000000 0.00000
MTRIX1 3 -1.000000 0.000000 0.000000 0.00000
MTRIX2 3 0.000000 -1.000000 0.000000 0.00000
MTRIX3 3 0.000000 0.000000 1.000000 0.00000