10 20 30 40 50 60 70 80 1GHT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 11-JAN-01 1GHT
TITLE SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF GAMMA DELTA TITLE 2 RESOLVASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSON GAMMA-DELTA RESOLVASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL CATALYTIC DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDJ1.3
KEYWDS RECOMBINASE, CATALYTIC DOMAIN, MIXED ALPHA BETA, MONOMER, KEYWDS 2 DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
AUTHOR B.PAN,G.P.MULLEN
REVDAT 2 24-FEB-09 1GHT 1 VERSN REVDAT 1 01-AUG-01 1GHT 0
JRNL AUTH B.PAN,M.W.MACIEJEWSKI,A.MARINTCHEV,G.P.MULLEN JRNL TITL SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF JRNL TITL 2 GAMMADELTA RESOLVASE. IMPLICATIONS FOR THE JRNL TITL 3 MECHANISM OF CATALYSIS. JRNL REF J.MOL.BIOL. V. 310 1089 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11501998 JRNL DOI 10.1006/JMBI.2001.4821
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.PAN,G.P.MULLEN REMARK 1 TITL 1H, 15N AND 13C RESONANCE ASSIGNMENTS FOR THE REMARK 1 TITL 2 CATALYTIC CORE OF GAMMA DELTA RESOLVASE REMARK 1 REF J.BIOMOL.NMR V. 13 307 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008316603457
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR 4.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE NMR RESTRAINTS INCLUDED 2109 REMARK 3 USEFUL NOE DETERMINED UPPER DISTANCE RESTRAINTS, 35 HYDROGEN REMARK 3 BONDS, AND 297 TORSION ANGLE RESTRAINTS. STRUCTURES WERE REMARK 3 CALCULATED IN THE DYANA USING TORSION ANGLE DYNAMICS. THE REMARK 3 CALCULATION STARTED WITH 200 RANDOMIZED STRUCTURES. THE 19 REMARK 3 STRUCTURES WITH THE LOWEST TARGET FUNCTION WERE REFINED WITHIN REMARK 3 XPLOR USING SIMULATED ANNEALING. THE 19 REFINED STRUCTURAL REMARK 3 CONFORMERS DISPLAYED NO NOE VIOLATIONS >0.3 ANGSTROMS AND NO REMARK 3 DIHEDRAL ANGLE VIOLATIONS >3 DEGREES. THE MINIMIZED AVERAGE REMARK 3 STRUCTURE WAS CALCULATED FROM THE MEAN POSITIONS OF THE REMARK 3 COORDINATES FOR THE 19 STRUCTURAL CONFORMERS AND WAS REFINED REMARK 3 BY POWELL ENERGY MINIMIZATION IN XPLOR USING FULL NMR REMARK 3 RESTRAINTS.
REMARK 4 REMARK 4 1GHT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-01. REMARK 100 THE RCSB ID CODE IS RCSB001526.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.00 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 1M REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.002 M GAMMA DELTA RESOLVASE REMARK 210 (1-105) U-15N; 0.020 M REMARK 210 PHOSPHATE BUFFER, PH 6.5; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, HNHA, REMARK 210 3D_13C-SEPARATED_ NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, NMRPIPE 1.7, XEASY REMARK 210 1.3.13, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE- RESONANCE 3D REMARK 210 NMR SPECTROSCOPY FOR RESONANCE ASSIGNMENTS AND DOUBLE- REMARK 210 RESONANCE 3D NMR SPECTROSCOPY FOR OBTAINING NOESY DATA.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 53.60 -114.08 REMARK 500 GLN A 13 -57.51 -133.11 REMARK 500 GLN A 14 40.71 -174.74 REMARK 500 ARG A 32 65.56 -112.37 REMARK 500 ASP A 67 -75.97 -138.06 REMARK 500 ARG A 68 138.60 179.85 REMARK 500 ARG A 71 -59.47 -171.76 REMARK 500 ASP A 72 -65.58 -124.01 REMARK 500 ASP A 95 -44.04 -137.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HX7 RELATED DB: PDB REMARK 900 1HX7 IS GAMMA-DELTA RESOLVASE (19 MODELS) REMARK 900 RELATED ID: 4269 RELATED DB: BMRB REMARK 900 4269 IS THE 1H, 15N AND 13C CHEMICAL SHIFT ASSIGNMENTS FOR REMARK 900 THE CATALYTIC CORE OF GAMMA DELTA RESOLVASE
DBREF 1GHT A 1 105 UNP P03012 TNR1_ECOLI 1 105
SEQRES 1 A 105 MET ARG LEU PHE GLY TYR ALA ARG VAL SER THR SER GLN SEQRES 2 A 105 GLN SER LEU ASP ILE GLN VAL ARG ALA LEU LYS ASP ALA SEQRES 3 A 105 GLY VAL LYS ALA ASN ARG ILE PHE THR ASP LYS ALA SER SEQRES 4 A 105 GLY SER SER SER ASP ARG LYS GLY LEU ASP LEU LEU ARG SEQRES 5 A 105 MET LYS VAL GLU GLU GLY ASP VAL ILE LEU VAL LYS LYS SEQRES 6 A 105 LEU ASP ARG LEU GLY ARG ASP THR ALA ASP MET ILE GLN SEQRES 7 A 105 LEU ILE LYS GLU PHE ASP ALA GLN GLY VAL SER ILE ARG SEQRES 8 A 105 PHE ILE ASP ASP GLY ILE SER THR ASP GLY GLU MET GLY SEQRES 9 A 105 LYS
HELIX 1 1 GLN A 14 GLY A 27 1 14 HELIX 2 2 LYS A 29 ASN A 31 5 3 HELIX 3 3 LYS A 46 VAL A 55 1 10 HELIX 4 4 ALA A 74 GLN A 86 1 13
SHEET 1 A 3 ILE A 33 PHE A 34 0 SHEET 2 A 3 LEU A 3 TYR A 6 1 O GLY A 5 N PHE A 34 SHEET 3 A 3 VAL A 60 VAL A 63 1 O VAL A 60 N PHE A 4
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000