10 20 30 40 50 60 70 80 1GE9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBOSOME 19-OCT-00 1GE9
TITLE SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME RECYCLING FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B
KEYWDS THREE-HELIX BUNDLE, RIBOSOME
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR T.YOSHIDA,S.UCHIYAMA,H.NAKANO,H.KASHIMORI,H.KIJIMA, AUTHOR 2 T.OHSHIMA,Y.SAIHARA,T.ISHINO,T.SHIMAHARA,T.YOSHIDA,K.YOKOSE, AUTHOR 3 T.OHKUBO,A.KAJI,Y.KOBAYASHI
REVDAT 4 24-FEB-09 1GE9 1 VERSN REVDAT 3 01-APR-03 1GE9 1 JRNL REVDAT 2 21-JAN-03 1GE9 1 REMARK REVDAT 1 16-MAY-01 1GE9 0
JRNL AUTH T.YOSHIDA,S.UCHIYAMA,H.NAKANO,H.KASHIMORI,H.KIJIMA, JRNL AUTH 2 T.OHSHIMA,Y.SAIHARA,T.ISHINO,H.SHIMAHARA,T.YOSHIDA, JRNL AUTH 3 K.YOKOSE,T.OHKUBO,A.KAJI,Y.KOBAYASHI JRNL TITL SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING JRNL TITL 2 FACTOR FROM AQUIFEX AEOLICUS. JRNL REF BIOCHEMISTRY V. 40 2387 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327859 JRNL DOI 10.1021/BI002474G
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GE9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB005069.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 0.5MM RIBOSOME RECYCLING REMARK 210 FACTOR U-15N; 20MM ACETATE REMARK 210 BUFFER, 20MM NACL; 93% D2O, 7% REMARK 210 D2O; 0.5MM RIBOSOME RECYCLING REMARK 210 FACTOR U-15N,13C; 20MM ACETATE REMARK 210 BUFFER, 20MM NACL; 93% D2O, 7% REMARK 210 D2O; 0.5MM RIBOSOME RECYCLING REMARK 210 FACTOR U-15N,13C; 20MM ACETATE REMARK 210 BUFFER, 20MM NACL; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, REMARK 210 RELAXATION TIME MEASUREMENTS, REMARK 210 TRIPLE RESONANCE EXPERIMENTS REMARK 210 FOR ASSIGNMENTS, QUANTITATIVE REMARK 210 J CORRELATION FOR COUPLING REMARK 210 CONSTANTS, 3D_13C-SEPARATED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 0.9 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 -157.54 -130.32 REMARK 500 1 VAL A 40 -106.08 -80.77 REMARK 500 1 GLU A 41 -21.03 79.09 REMARK 500 1 ILE A 43 65.72 -66.84 REMARK 500 1 ILE A 54 37.97 -91.79 REMARK 500 1 THR A 59 135.08 -174.05 REMARK 500 1 HIS A 65 -57.54 68.73 REMARK 500 1 ASN A 98 20.07 -147.49 REMARK 500 1 LEU A 107 85.72 -63.75 REMARK 500 1 THR A 108 -169.05 -74.60 REMARK 500 1 GLU A 145 8.89 58.01 REMARK 500 2 LYS A 3 -50.78 -161.57 REMARK 500 2 ARG A 31 82.92 -61.47 REMARK 500 2 LEU A 39 -45.04 -22.93 REMARK 500 2 VAL A 40 -75.96 -77.55 REMARK 500 2 GLU A 41 -40.54 79.30 REMARK 500 2 ILE A 43 80.54 -53.29 REMARK 500 2 LYS A 44 87.01 -59.29 REMARK 500 2 ILE A 54 44.47 -94.33 REMARK 500 2 ASN A 98 23.17 -155.12 REMARK 500 2 GLU A 145 12.13 52.66 REMARK 500 3 LYS A 3 -74.27 -159.89 REMARK 500 3 ARG A 31 81.03 -61.51 REMARK 500 3 LEU A 39 -43.19 -28.93 REMARK 500 3 GLU A 41 -70.92 132.40 REMARK 500 3 GLU A 42 25.20 -161.56 REMARK 500 3 ILE A 43 46.35 28.46 REMARK 500 3 LYS A 44 94.80 -44.38 REMARK 500 3 LEU A 57 -53.16 -132.40 REMARK 500 3 ASN A 98 24.29 -156.74 REMARK 500 3 GLU A 145 -24.68 68.39 REMARK 500 3 SER A 183 -75.38 -77.24 REMARK 500 4 ARG A 31 85.17 -51.75 REMARK 500 4 LEU A 39 -48.29 -26.92 REMARK 500 4 ILE A 43 31.41 38.75 REMARK 500 4 LYS A 44 79.89 4.22 REMARK 500 4 ILE A 54 -100.88 -60.75 REMARK 500 4 LYS A 55 -60.53 67.34 REMARK 500 4 HIS A 65 39.34 -69.99 REMARK 500 4 VAL A 72 -172.01 -63.13 REMARK 500 4 ASN A 98 23.43 -152.81 REMARK 500 4 GLU A 145 10.52 54.21 REMARK 500 4 SER A 183 -79.67 -90.56 REMARK 500 5 LEU A 39 -49.00 -28.49 REMARK 500 5 VAL A 40 -106.33 -75.12 REMARK 500 5 GLU A 41 -21.72 79.33 REMARK 500 5 ILE A 54 33.09 -89.07 REMARK 500 5 HIS A 65 -56.25 66.62 REMARK 500 5 ASN A 98 18.50 -147.63 REMARK 500 5 LEU A 107 96.80 -48.01 REMARK 500 5 GLU A 145 -41.37 67.63 REMARK 500 6 LEU A 39 -41.72 -29.71 REMARK 500 6 VAL A 40 -103.83 -87.00 REMARK 500 6 GLU A 41 -19.14 78.70 REMARK 500 6 ILE A 43 69.21 -56.75 REMARK 500 6 PRO A 53 -162.93 -58.47 REMARK 500 6 HIS A 65 -55.60 68.84 REMARK 500 6 ASN A 98 19.99 -155.32 REMARK 500 6 LEU A 107 91.23 -55.37 REMARK 500 6 GLU A 145 3.84 58.62 REMARK 500 6 GLU A 180 -50.66 -29.12 REMARK 500 7 VAL A 40 -103.91 -71.93 REMARK 500 7 GLU A 41 -23.15 82.66 REMARK 500 7 ILE A 43 63.72 -66.81 REMARK 500 7 LYS A 44 92.12 -54.46 REMARK 500 7 LYS A 55 101.67 -45.21 REMARK 500 7 GLN A 56 29.03 84.86 REMARK 500 7 LEU A 57 -52.41 -136.31 REMARK 500 7 THR A 59 103.46 -162.03 REMARK 500 7 TRP A 73 -47.06 -25.66 REMARK 500 7 ASN A 98 18.91 -145.58 REMARK 500 7 GLU A 145 18.99 47.81 REMARK 500 7 SER A 183 -61.91 -125.39 REMARK 500 8 ARG A 31 86.75 -44.10 REMARK 500 8 LEU A 39 -35.16 -29.80 REMARK 500 8 VAL A 40 -85.29 -84.11 REMARK 500 8 GLU A 41 -34.21 76.66 REMARK 500 8 ILE A 43 87.50 -40.61 REMARK 500 8 LYS A 44 86.28 -58.46 REMARK 500 8 ILE A 54 49.10 -88.58 REMARK 500 8 HIS A 65 -55.05 71.37 REMARK 500 8 LEU A 91 -166.52 -113.84 REMARK 500 8 ASN A 98 25.59 -158.03 REMARK 500 8 GLU A 145 8.58 53.17 REMARK 500 8 SER A 183 -78.60 -62.89 REMARK 500 9 ARG A 31 84.15 -60.18 REMARK 500 9 LEU A 39 -41.94 -18.46 REMARK 500 9 GLU A 41 -61.97 149.30 REMARK 500 9 GLU A 42 -17.16 -176.03 REMARK 500 9 PRO A 53 -177.72 -56.85 REMARK 500 9 LEU A 57 -61.72 -129.44 REMARK 500 9 HIS A 65 -45.81 68.65 REMARK 500 9 ASN A 66 30.62 -88.66 REMARK 500 9 TRP A 73 -33.89 -37.61 REMARK 500 9 ASN A 98 14.30 -145.14 REMARK 500 9 GLU A 145 12.50 56.18 REMARK 500 10 LEU A 30 150.52 -48.32 REMARK 500 10 ARG A 31 77.49 -65.89 REMARK 500 10 LEU A 39 -41.60 -20.54 REMARK 500 10 GLU A 41 -64.41 143.98 REMARK 500 10 GLU A 42 -17.74 -175.49 REMARK 500 10 PRO A 53 -172.54 -68.56 REMARK 500 10 LEU A 57 -66.11 -135.12 REMARK 500 10 HIS A 65 -61.56 66.54 REMARK 500 10 ASN A 66 37.89 -81.48 REMARK 500 10 TRP A 73 -33.80 -37.77 REMARK 500 10 ASN A 98 19.81 -148.07 REMARK 500 10 LEU A 107 108.28 -56.56 REMARK 500 10 GLU A 145 12.89 55.53 REMARK 500 11 ARG A 31 70.85 -62.89 REMARK 500 11 ALA A 35 49.52 -85.65 REMARK 500 11 LEU A 39 -28.44 -23.50 REMARK 500 11 VAL A 40 -95.14 -94.12 REMARK 500 11 GLU A 41 -34.45 77.48 REMARK 500 11 GLU A 42 51.70 -99.00 REMARK 500 11 LYS A 44 104.93 -47.37 REMARK 500 11 LEU A 57 -62.95 -133.20 REMARK 500 11 GLU A 64 -137.82 -71.41 REMARK 500 11 HIS A 65 14.20 -142.04 REMARK 500 11 ASN A 66 21.19 -158.23 REMARK 500 11 ASN A 98 17.96 -149.33 REMARK 500 11 THR A 108 -169.48 -71.74 REMARK 500 11 GLU A 145 11.77 55.32 REMARK 500 12 LYS A 3 -161.42 -122.43 REMARK 500 12 VAL A 40 -98.65 -67.36 REMARK 500 12 GLU A 42 80.92 -156.44 REMARK 500 12 ILE A 43 65.55 -103.09 REMARK 500 12 LYS A 44 102.18 -50.64 REMARK 500 12 PRO A 53 172.29 -57.92 REMARK 500 12 GLU A 64 -161.06 -118.60 REMARK 500 12 ASN A 66 15.11 -147.11 REMARK 500 12 ASN A 98 22.74 -166.09 REMARK 500 12 LEU A 107 82.05 -58.18 REMARK 500 12 GLU A 145 -26.35 67.97 REMARK 500 12 SER A 183 -70.65 -51.87 REMARK 500 13 LYS A 3 124.62 63.60 REMARK 500 13 LEU A 30 162.89 -49.50 REMARK 500 13 SER A 33 31.87 -93.71 REMARK 500 13 LEU A 39 -37.95 -39.11 REMARK 500 13 VAL A 40 -106.93 -84.65 REMARK 500 13 ILE A 43 86.42 -50.95 REMARK 500 13 PRO A 53 48.98 -80.74 REMARK 500 13 ILE A 54 23.40 43.17 REMARK 500 13 ASN A 98 16.51 -142.49 REMARK 500 13 LEU A 107 100.42 -35.32 REMARK 500 13 SER A 183 -71.63 -58.88 REMARK 500 14 LYS A 3 -70.48 -126.95 REMARK 500 14 GLU A 42 86.00 -153.80 REMARK 500 14 ILE A 43 49.30 -94.58 REMARK 500 14 LYS A 44 103.64 -43.84 REMARK 500 14 PRO A 53 179.21 -55.15 REMARK 500 14 LEU A 57 -68.61 -127.05 REMARK 500 14 HIS A 65 -53.12 69.15 REMARK 500 14 ASN A 90 13.68 58.55 REMARK 500 14 ASN A 98 24.48 -158.70 REMARK 500 14 THR A 108 -169.40 -102.74 REMARK 500 14 GLU A 145 -11.78 62.50 REMARK 500 15 LYS A 3 -56.23 -171.84 REMARK 500 15 ARG A 31 -111.37 -96.88 REMARK 500 15 SER A 33 47.80 -74.52 REMARK 500 15 VAL A 40 -102.23 -75.07 REMARK 500 15 GLU A 42 32.11 -149.73 REMARK 500 15 ILE A 43 94.06 -39.02 REMARK 500 15 LYS A 44 87.56 -54.39 REMARK 500 15 HIS A 65 -55.71 70.79 REMARK 500 15 ASN A 98 28.28 -161.78 REMARK 500 15 LEU A 107 97.70 -35.97 REMARK 500 15 THR A 108 -171.83 -63.37 REMARK 500 15 GLU A 145 17.05 49.98 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1GE9 A 1 184 UNP O66928 RRF_AQUAE 1 184
SEQRES 1 A 184 MET ILE LYS GLU LEU GLU ASP ILE PHE LYS GLU ALA GLU SEQRES 2 A 184 LYS ASP MET LYS LYS ALA VAL GLU TYR TYR LYS ASN GLU SEQRES 3 A 184 ILE ALA GLY LEU ARG THR SER ARG ALA SER THR ALA LEU SEQRES 4 A 184 VAL GLU GLU ILE LYS VAL GLU TYR TYR GLY SER LYS VAL SEQRES 5 A 184 PRO ILE LYS GLN LEU GLY THR ILE SER VAL PRO GLU HIS SEQRES 6 A 184 ASN GLN ILE VAL ILE GLN VAL TRP ASP GLN ASN ALA VAL SEQRES 7 A 184 PRO ALA ILE GLU LYS ALA ILE ARG GLU GLU LEU ASN LEU SEQRES 8 A 184 ASN PRO THR VAL GLN GLY ASN VAL ILE ARG VAL THR LEU SEQRES 9 A 184 PRO PRO LEU THR GLU GLU ARG ARG ARG GLU LEU VAL ARG SEQRES 10 A 184 LEU LEU HIS LYS ILE THR GLU GLU ALA ARG VAL ARG VAL SEQRES 11 A 184 ARG ASN VAL ARG ARG GLU ALA LYS GLU MET ILE GLU GLU SEQRES 12 A 184 LEU GLU GLY ILE SER GLU ASP GLU LYS LYS ARG ALA LEU SEQRES 13 A 184 GLU ARG LEU GLN LYS LEU THR ASP LYS TYR ILE ASP GLU SEQRES 14 A 184 ILE ASN LYS LEU MET GLU ALA LYS GLU LYS GLU ILE MET SEQRES 15 A 184 SER VAL
HELIX 1 1 GLU A 4 LEU A 30 1 27 HELIX 2 2 ASN A 76 ASN A 90 1 15 HELIX 3 3 THR A 108 LEU A 144 1 37 HELIX 4 4 SER A 148 MET A 182 1 35
SHEET 1 A 2 VAL A 45 GLU A 46 0 SHEET 2 A 2 LYS A 51 VAL A 52 -1 O VAL A 52 N VAL A 45 SHEET 1 B 4 THR A 59 SER A 61 0 SHEET 2 B 4 GLN A 67 GLN A 71 -1 O VAL A 69 N SER A 61 SHEET 3 B 4 VAL A 99 THR A 103 -1 N ILE A 100 O ILE A 70 SHEET 4 B 4 THR A 94 GLN A 96 -1 N THR A 94 O ARG A 101
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000