10 20 30 40 50 60 70 80 1GDF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RHO-GTPASE INHIBITOR 11-MAY-97 1GDF
TITLE STRUCTURE OF RHOGDI: A C-TERMINAL BINDING DOMAIN TARGETS AN TITLE 2 N-TERMINAL INHIBITORY PEPTIDE TO GTPASES, NMR, MINIMIZED TITLE 3 AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOGDI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISOPRENE BINDING DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A
KEYWDS RHO-GTPASE INHIBITOR, NUCLEOTIDE EXCHANGE, ISOPRENE BINDING
EXPDTA SOLUTION NMR
AUTHOR M.K.ROSEN,Y.Q.GOSSER
REVDAT 2 24-FEB-09 1GDF 1 VERSN REVDAT 1 19-NOV-97 1GDF 0
JRNL AUTH Y.Q.GOSSER,T.K.NOMANBHOY,B.AGHAZADEH,D.MANOR, JRNL AUTH 2 C.COMBS,R.A.CERIONE,M.K.ROSEN JRNL TITL C-TERMINAL BINDING DOMAIN OF RHO GDP-DISSOCIATION JRNL TITL 2 INHIBITOR DIRECTS N-TERMINAL INHIBITORY PEPTIDE TO JRNL TITL 3 GTPASES. JRNL REF NATURE V. 387 814 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9194563 JRNL DOI 10.1038/42961
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.0 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GDF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACB, CBCACONNH, HNCO, CCC- REMARK 210 TOCSY-NNH, HCC-TOCSY-NNH, 15N- REMARK 210 TOCSY, HCCH-TOCSY, HCCH-COSY, REMARK 210 15N-NOESY, 15N/13C-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY+ REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY/ REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO DISTANCE VIOLATIONS 0.3 REMARK 210 ANGSTROMS, THEN LOWEST OVERALL REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 85.99 52.68 REMARK 500 CYS A 79 -166.34 -160.30 REMARK 500 GLU A 106 105.74 -50.27 REMARK 500 ARG A 120 -66.94 -149.45 REMARK 500 GLN A 130 119.26 -162.12 REMARK 500 ASP A 140 132.81 -170.09 REMARK 500 ARG A 152 -39.47 -167.10 REMARK 500 ALA A 153 -75.20 -136.37 REMARK 500 GLU A 154 -145.00 -143.37 REMARK 500 ASP A 183 -151.18 -121.45 REMARK 500 ASP A 185 -15.58 -171.25 REMARK 500 THR A 187 -166.29 -175.93 REMARK 500 LYS A 199 -154.24 -154.93 REMARK 500 GLU A 201 51.56 -143.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 74 0.26 SIDE_CHAIN REMARK 500 ARG A 111 0.29 SIDE_CHAIN REMARK 500 ARG A 117 0.27 SIDE_CHAIN REMARK 500 ARG A 120 0.22 SIDE_CHAIN REMARK 500 ARG A 134 0.23 SIDE_CHAIN REMARK 500 ARG A 152 0.32 SIDE_CHAIN REMARK 500 ARG A 172 0.24 SIDE_CHAIN REMARK 500 ARG A 180 0.21 SIDE_CHAIN REMARK 500 ARG A 186 0.24 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AJW RELATED DB: PDB
DBREF 1GDF A 60 204 UNP P19803 GDIR_BOVIN 60 204
SEQRES 1 A 145 ALA VAL SER ALA ASP PRO ASN VAL PRO ASN VAL VAL VAL SEQRES 2 A 145 THR ARG LEU THR LEU VAL CYS SER THR ALA PRO GLY PRO SEQRES 3 A 145 LEU GLU LEU ASP LEU THR GLY ASP LEU GLU SER PHE LYS SEQRES 4 A 145 LYS GLN SER PHE VAL LEU LYS GLU GLY VAL GLU TYR ARG SEQRES 5 A 145 ILE LYS ILE SER PHE ARG VAL ASN ARG GLU ILE VAL SER SEQRES 6 A 145 GLY MET LYS TYR ILE GLN HIS THR TYR ARG LYS GLY VAL SEQRES 7 A 145 LYS ILE ASP LYS THR ASP TYR MET VAL GLY SER TYR GLY SEQRES 8 A 145 PRO ARG ALA GLU GLU TYR GLU PHE LEU THR PRO MET GLU SEQRES 9 A 145 GLU ALA PRO LYS GLY MET LEU ALA ARG GLY SER TYR ASN SEQRES 10 A 145 ILE LYS SER ARG PHE THR ASP ASP ASP ARG THR ASP HIS SEQRES 11 A 145 LEU SER TRP GLU TRP ASN LEU THR ILE LYS LYS GLU TRP SEQRES 12 A 145 LYS ASP
HELIX 1 1 GLU A 95 LYS A 99 3 5
SHEET 1 A 3 SER A 101 VAL A 103 0 SHEET 2 A 3 ASP A 188 THR A 197 1 N ASN A 195 O PHE A 102 SHEET 3 A 3 ASN A 176 THR A 182 -1 N PHE A 181 O HIS A 189 SHEET 1 B 3 GLU A 155 GLU A 157 0 SHEET 2 B 3 ARG A 111 VAL A 118 -1 N PHE A 116 O TYR A 156 SHEET 3 B 3 VAL A 70 VAL A 78 -1 N VAL A 78 O ARG A 111 SHEET 1 C 2 MET A 126 THR A 132 0 SHEET 2 C 2 ASP A 140 GLY A 147 -1 N GLY A 147 O MET A 126
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000