10 20 30 40 50 60 70 80 1GAO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 30-NOV-00 1GAO
TITLE CRYSTAL STRUCTURE OF THE L44S MUTANT OF FERREDOXIN I
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN I; COMPND 3 CHAIN: A, B, C, D
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AZOTOBACTER VINELANDII; SOURCE 3 ORGANISM_TAXID: 354
KEYWDS IRON-SULFUR CLUSTERS, FERREDOXIN, ELECTRON TRANSPORT
EXPDTA X-RAY DIFFRACTION
AUTHOR C.D.STOUT,B.K.BURGESS,G.S.PRASAD,V.SRIDHAR,Y.S.JUNG
REVDAT 4 31-MAR-09 1GAO 1 ATOM CONECT REVDAT 3 24-FEB-09 1GAO 1 VERSN REVDAT 2 18-JAN-05 1GAO 1 JRNL REMARK CONECT MASTER REVDAT 1 13-DEC-00 1GAO 0
JRNL AUTH K.CHEN,Y.S.JUNG,C.A.BONAGURA,G.J.TILLEY,G.S.PRASAD, JRNL AUTH 2 V.SRIDHAR,F.A.ARMSTRONG,C.D.STOUT,B.K.BURGESS JRNL TITL AZOTOBACTER VINELANDII FERREDOXIN I: A SEQUENCE JRNL TITL 2 AND STRUCTURE COMPARISON APPROACH TO ALTERATION OF JRNL TITL 3 [4FE-4S]2+/+ REDUCTION POTENTIAL. JRNL REF J.BIOL.CHEM. V. 277 5603 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11704670 JRNL DOI 10.1074/JBC.M108916200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 30953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 3% OF DATA REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 928 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3356 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GAO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012432.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SSRL BEAM LINE 7-1 REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 7FD1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LITHIUM SULFATE, REMARK 280 TRIS BUFFER, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 35 NE2 HIS A 35 CD2 -0.068 REMARK 500 HIS A 103 NE2 HIS A 103 CD2 -0.075 REMARK 500 HIS C 435 NE2 HIS C 435 CD2 -0.067 REMARK 500 HIS C 503 NE2 HIS C 503 CD2 -0.075 REMARK 500 HIS D 635 NE2 HIS D 635 CD2 -0.074 REMARK 500 HIS D 703 NE2 HIS D 703 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 78 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 78 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TRP A 94 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 94 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP B 278 CD1 - CG - CD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 TRP B 278 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP B 294 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP B 294 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL C 419 N - CA - CB ANGL. DEV. = -16.8 DEGREES REMARK 500 TRP C 478 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP C 478 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP C 494 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP C 494 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP C 494 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG C 506 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP D 678 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP D 678 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP D 694 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP D 694 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP D 695 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG D 706 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG D 706 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 63.32 38.71 REMARK 500 LYS B 210 8.34 59.37 REMARK 500 ALA B 243 17.78 53.58 REMARK 500 GLN B 252 41.54 31.62 REMARK 500 LYS C 410 9.77 59.98 REMARK 500 THR C 414 8.85 54.38 REMARK 500 GLN C 452 47.14 39.76 REMARK 500 ASP C 490 47.72 -108.14 REMARK 500 THR D 605 -160.99 -100.66 REMARK 500 CYS D 611 -67.66 -105.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 26 0.07 SIDE_CHAIN REMARK 500 TYR D 626 0.07 SIDE_CHAIN REMARK 500 ARG D 706 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 898 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH A 936 DISTANCE = 5.10 ANGSTROMS REMARK 525 HOH C 950 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D 965 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH A 998 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH D1028 DISTANCE = 5.71 ANGSTROMS REMARK 525 HOH C1012 DISTANCE = 8.70 ANGSTROMS REMARK 525 HOH C1017 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1024 DISTANCE = 8.52 ANGSTROMS REMARK 525 HOH B1025 DISTANCE = 13.19 ANGSTROMS REMARK 525 HOH D1056 DISTANCE = 8.99 ANGSTROMS REMARK 525 HOH C1039 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH B1034 DISTANCE = 11.36 ANGSTROMS REMARK 525 HOH B1035 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B1043 DISTANCE = 5.73 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 107 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S A 108 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 307 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S B 308 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 C 507 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S C 508 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 D 707 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S D 708
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7FD1 RELATED DB: PDB REMARK 900 NATIVE FERREDOXIN I STRUCTURE
DBREF 1GAO A 1 106 UNP P00214 FER1_AZOVI 1 106 DBREF 1GAO B 201 306 UNP P00214 FER1_AZOVI 1 106 DBREF 1GAO C 401 506 UNP P00214 FER1_AZOVI 1 106 DBREF 1GAO D 601 706 UNP P00214 FER1_AZOVI 1 106
SEQADV 1GAO SER A 44 UNP P00214 LEU 44 ENGINEERED SEQADV 1GAO SER B 244 UNP P00214 LEU 44 ENGINEERED SEQADV 1GAO SER C 444 UNP P00214 LEU 44 ENGINEERED SEQADV 1GAO SER D 644 UNP P00214 LEU 44 ENGINEERED
SEQRES 1 A 106 ALA PHE VAL VAL THR ASP ASN CYS ILE LYS CYS LYS TYR SEQRES 2 A 106 THR ASP CYS VAL GLU VAL CYS PRO VAL ASP CYS PHE TYR SEQRES 3 A 106 GLU GLY PRO ASN PHE LEU VAL ILE HIS PRO ASP GLU CYS SEQRES 4 A 106 ILE ASP CYS ALA SER CYS GLU PRO GLU CYS PRO ALA GLN SEQRES 5 A 106 ALA ILE PHE SER GLU ASP GLU VAL PRO GLU ASP MET GLN SEQRES 6 A 106 GLU PHE ILE GLN LEU ASN ALA GLU LEU ALA GLU VAL TRP SEQRES 7 A 106 PRO ASN ILE THR GLU LYS LYS ASP PRO LEU PRO ASP ALA SEQRES 8 A 106 GLU ASP TRP ASP GLY VAL LYS GLY LYS LEU GLN HIS LEU SEQRES 9 A 106 GLU ARG SEQRES 1 B 106 ALA PHE VAL VAL THR ASP ASN CYS ILE LYS CYS LYS TYR SEQRES 2 B 106 THR ASP CYS VAL GLU VAL CYS PRO VAL ASP CYS PHE TYR SEQRES 3 B 106 GLU GLY PRO ASN PHE LEU VAL ILE HIS PRO ASP GLU CYS SEQRES 4 B 106 ILE ASP CYS ALA SER CYS GLU PRO GLU CYS PRO ALA GLN SEQRES 5 B 106 ALA ILE PHE SER GLU ASP GLU VAL PRO GLU ASP MET GLN SEQRES 6 B 106 GLU PHE ILE GLN LEU ASN ALA GLU LEU ALA GLU VAL TRP SEQRES 7 B 106 PRO ASN ILE THR GLU LYS LYS ASP PRO LEU PRO ASP ALA SEQRES 8 B 106 GLU ASP TRP ASP GLY VAL LYS GLY LYS LEU GLN HIS LEU SEQRES 9 B 106 GLU ARG SEQRES 1 C 106 ALA PHE VAL VAL THR ASP ASN CYS ILE LYS CYS LYS TYR SEQRES 2 C 106 THR ASP CYS VAL GLU VAL CYS PRO VAL ASP CYS PHE TYR SEQRES 3 C 106 GLU GLY PRO ASN PHE LEU VAL ILE HIS PRO ASP GLU CYS SEQRES 4 C 106 ILE ASP CYS ALA SER CYS GLU PRO GLU CYS PRO ALA GLN SEQRES 5 C 106 ALA ILE PHE SER GLU ASP GLU VAL PRO GLU ASP MET GLN SEQRES 6 C 106 GLU PHE ILE GLN LEU ASN ALA GLU LEU ALA GLU VAL TRP SEQRES 7 C 106 PRO ASN ILE THR GLU LYS LYS ASP PRO LEU PRO ASP ALA SEQRES 8 C 106 GLU ASP TRP ASP GLY VAL LYS GLY LYS LEU GLN HIS LEU SEQRES 9 C 106 GLU ARG SEQRES 1 D 106 ALA PHE VAL VAL THR ASP ASN CYS ILE LYS CYS LYS TYR SEQRES 2 D 106 THR ASP CYS VAL GLU VAL CYS PRO VAL ASP CYS PHE TYR SEQRES 3 D 106 GLU GLY PRO ASN PHE LEU VAL ILE HIS PRO ASP GLU CYS SEQRES 4 D 106 ILE ASP CYS ALA SER CYS GLU PRO GLU CYS PRO ALA GLN SEQRES 5 D 106 ALA ILE PHE SER GLU ASP GLU VAL PRO GLU ASP MET GLN SEQRES 6 D 106 GLU PHE ILE GLN LEU ASN ALA GLU LEU ALA GLU VAL TRP SEQRES 7 D 106 PRO ASN ILE THR GLU LYS LYS ASP PRO LEU PRO ASP ALA SEQRES 8 D 106 GLU ASP TRP ASP GLY VAL LYS GLY LYS LEU GLN HIS LEU SEQRES 9 D 106 GLU ARG
HET SF4 A 107 8 HET F3S A 108 7 HET SF4 B 307 8 HET F3S B 308 7 HET SF4 C 507 8 HET F3S C 508 7 HET SF4 D 707 8 HET F3S D 708 7
HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER
FORMUL 5 SF4 4(FE4 S4) FORMUL 6 F3S 4(FE3 S4) FORMUL 13 HOH *257(H2 O)
HELIX 1 1 ASP A 6 ILE A 9 5 4 HELIX 2 2 ASP A 15 VAL A 19 5 5 HELIX 3 3 SER A 44 CYS A 49 1 6 HELIX 4 4 ASP A 58 VAL A 60 5 3 HELIX 5 5 PRO A 61 MET A 64 5 4 HELIX 6 6 GLN A 65 GLU A 76 1 12 HELIX 7 7 ASP A 90 ASP A 95 1 6 HELIX 8 8 GLY A 99 LEU A 104 5 6 HELIX 9 9 ASP B 206 ILE B 209 5 4 HELIX 10 10 THR B 214 CYS B 220 5 7 HELIX 11 11 ASP B 258 VAL B 260 5 3 HELIX 12 12 PRO B 261 MET B 264 5 4 HELIX 13 13 GLN B 265 GLU B 276 1 12 HELIX 14 14 ASP B 290 ASP B 295 1 6 HELIX 15 15 GLY B 299 LEU B 304 5 6 HELIX 16 16 ASP C 406 ILE C 409 5 4 HELIX 17 17 THR C 414 CYS C 420 5 7 HELIX 18 18 SER C 444 CYS C 449 1 6 HELIX 19 19 ASP C 458 VAL C 460 5 3 HELIX 20 20 PRO C 461 MET C 464 5 4 HELIX 21 21 GLN C 465 TRP C 478 1 14 HELIX 22 22 ASP C 490 ASP C 495 1 6 HELIX 23 23 GLY C 499 LEU C 504 5 6 HELIX 24 24 ASP D 606 ILE D 609 5 4 HELIX 25 25 THR D 614 VAL D 619 5 6 HELIX 26 26 ASP D 658 VAL D 660 5 3 HELIX 27 27 PRO D 661 GLN D 665 5 5 HELIX 28 28 GLU D 666 TRP D 678 1 13 HELIX 29 29 ASP D 690 ASP D 695 1 6 HELIX 30 30 GLY D 699 LEU D 704 5 6
SHEET 1 A 2 PHE A 2 VAL A 4 0 SHEET 2 A 2 ILE A 54 SER A 56 -1 N PHE A 55 O VAL A 3 SHEET 1 B 2 PHE A 25 GLU A 27 0 SHEET 2 B 2 LEU A 32 ILE A 34 -1 O VAL A 33 N TYR A 26 SHEET 1 C 2 PHE B 202 VAL B 204 0 SHEET 2 C 2 ILE B 254 SER B 256 -1 O PHE B 255 N VAL B 203 SHEET 1 D 2 PHE B 225 GLU B 227 0 SHEET 2 D 2 LEU B 232 ILE B 234 -1 O VAL B 233 N TYR B 226 SHEET 1 E 2 PHE C 402 VAL C 404 0 SHEET 2 E 2 ILE C 454 SER C 456 -1 O PHE C 455 N VAL C 403 SHEET 1 F 2 PHE C 425 GLU C 427 0 SHEET 2 F 2 LEU C 432 ILE C 434 -1 O VAL C 433 N TYR C 426 SHEET 1 G 2 PHE D 602 VAL D 604 0 SHEET 2 G 2 ILE D 654 SER D 656 -1 O PHE D 655 N VAL D 603 SHEET 1 H 2 PHE D 625 GLU D 627 0 SHEET 2 H 2 LEU D 632 ILE D 634 -1 O VAL D 633 N TYR D 626
LINK SG CYS A 8 FE3 F3S A 108 1555 1555 2.28 LINK SG CYS A 16 FE1 F3S A 108 1555 1555 2.32 LINK SG CYS A 20 FE4 SF4 A 107 1555 1555 2.32 LINK SG CYS A 39 FE1 SF4 A 107 1555 1555 2.30 LINK SG CYS A 42 FE2 SF4 A 107 1555 1555 2.27 LINK SG CYS A 45 FE3 SF4 A 107 1555 1555 2.29 LINK SG CYS A 49 FE4 F3S A 108 1555 1555 2.26 LINK SG CYS B 208 FE3 F3S B 308 1555 1555 2.27 LINK SG CYS B 216 FE1 F3S B 308 1555 1555 2.30 LINK SG CYS B 220 FE4 SF4 B 307 1555 1555 2.29 LINK SG CYS B 239 FE1 SF4 B 307 1555 1555 2.30 LINK SG CYS B 242 FE2 SF4 B 307 1555 1555 2.30 LINK SG CYS B 245 FE3 SF4 B 307 1555 1555 2.31 LINK SG CYS B 249 FE4 F3S B 308 1555 1555 2.31 LINK SG CYS C 408 FE3 F3S C 508 1555 1555 2.30 LINK SG CYS C 416 FE1 F3S C 508 1555 1555 2.30 LINK SG CYS C 420 FE4 SF4 C 507 1555 1555 2.31 LINK SG CYS C 439 FE1 SF4 C 507 1555 1555 2.26 LINK SG CYS C 442 FE2 SF4 C 507 1555 1555 2.28 LINK SG CYS C 445 FE3 SF4 C 507 1555 1555 2.31 LINK SG CYS C 449 FE4 F3S C 508 1555 1555 2.30 LINK SG CYS D 608 FE3 F3S D 708 1555 1555 2.28 LINK SG CYS D 616 FE1 F3S D 708 1555 1555 2.32 LINK SG CYS D 620 FE4 SF4 D 707 1555 1555 2.28 LINK SG CYS D 639 FE1 SF4 D 707 1555 1555 2.33 LINK SG CYS D 642 FE2 SF4 D 707 1555 1555 2.27 LINK SG CYS D 645 FE3 SF4 D 707 1555 1555 2.30 LINK SG CYS D 649 FE4 F3S D 708 1555 1555 2.26
SITE 1 AC1 11 PHE A 2 CYS A 20 PRO A 21 VAL A 22 SITE 2 AC1 11 CYS A 24 ILE A 34 CYS A 39 ILE A 40 SITE 3 AC1 11 CYS A 42 ALA A 43 CYS A 45 SITE 1 AC2 11 VAL A 4 CYS A 8 LYS A 12 TYR A 13 SITE 2 AC2 11 THR A 14 ASP A 15 CYS A 16 LEU A 32 SITE 3 AC2 11 CYS A 49 ALA A 51 ILE A 54 SITE 1 AC3 9 CYS B 220 CYS B 224 PHE B 225 ILE B 234 SITE 2 AC3 9 CYS B 239 ILE B 240 CYS B 242 ALA B 243 SITE 3 AC3 9 CYS B 245 SITE 1 AC4 7 CYS B 208 LYS B 212 TYR B 213 THR B 214 SITE 2 AC4 7 ASP B 215 CYS B 216 CYS B 249 SITE 1 AC5 9 PHE C 402 CYS C 420 CYS C 424 ILE C 434 SITE 2 AC5 9 CYS C 439 ILE C 440 CYS C 442 ALA C 443 SITE 3 AC5 9 CYS C 445 SITE 1 AC6 10 CYS C 408 LYS C 412 TYR C 413 THR C 414 SITE 2 AC6 10 ASP C 415 CYS C 416 CYS C 449 PRO C 450 SITE 3 AC6 10 ALA C 451 ILE C 454 SITE 1 AC7 11 PHE D 602 CYS D 620 VAL D 622 CYS D 624 SITE 2 AC7 11 PHE D 625 ILE D 634 CYS D 639 ILE D 640 SITE 3 AC7 11 CYS D 642 ALA D 643 CYS D 645 SITE 1 AC8 8 CYS D 608 LYS D 612 TYR D 613 THR D 614 SITE 2 AC8 8 ASP D 615 CYS D 616 CYS D 649 ILE D 654
CRYST1 130.800 85.600 67.200 90.00 117.90 90.00 C 1 2 1 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007645 0.000000 0.004048 0.00000
SCALE2 0.000000 0.011682 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016838 0.00000