10 20 30 40 50 60 70 80 1GA8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 29-NOV-00 1GA8
TITLE CRYSTAL STRUCTURE OF GALACOSYLTRANSFERASE LGTC IN COMPLEX TITLE 2 WITH DONOR AND ACCEPTOR SUGAR ANALOGS.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSYL TRANSFERASE LGTC; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.44; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: LGTC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCW
KEYWDS ALPHA-BETA PROTEIN, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.PERSSON,H.D.LY,M.DIEKELMANN,W.W.WAKARCHUK,S.G.WITHERS, AUTHOR 2 N.C.J.STRYNADKA
REVDAT 3 24-FEB-09 1GA8 1 VERSN REVDAT 2 01-APR-03 1GA8 1 JRNL REVDAT 1 14-FEB-01 1GA8 0
JRNL AUTH K.PERSSON,H.D.LY,M.DIECKELMANN,W.W.WAKARCHUK, JRNL AUTH 2 S.G.WITHERS,N.C.STRYNADKA JRNL TITL CRYSTAL STRUCTURE OF THE RETAINING JRNL TITL 2 GALACTOSYLTRANSFERASE LGTC FROM NEISSERIA JRNL TITL 3 MENINGITIDIS IN COMPLEX WITH DONOR AND ACCEPTOR JRNL TITL 4 SUGAR ANALOGS. JRNL REF NAT.STRUCT.BIOL. V. 8 166 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11175908 JRNL DOI 10.1038/84168
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 18233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 886 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2726 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.42000 REMARK 3 B22 (A**2) : -2.33000 REMARK 3 B33 (A**2) : 3.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.04 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.09 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.81 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.760 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 35.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1GA8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012427.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1G9R REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MONOMETHYLETHER 2000, NAOAC, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.98750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.61400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.07900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.61400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.98750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.07900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 218 REMARK 465 ASN A 219 REMARK 465 TRP A 220 REMARK 465 PHE A 221 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 PRO A 285 REMARK 465 HIS A 286 REMARK 465 ARG A 287 REMARK 465 MET A 288 REMARK 465 PHE A 289 REMARK 465 SER A 290 REMARK 465 THR A 291 REMARK 465 LYS A 292 REMARK 465 ARG A 293 REMARK 465 MET A 294 REMARK 465 LEU A 295 REMARK 465 GLN A 296 REMARK 465 ARG A 297 REMARK 465 TRP A 298 REMARK 465 ARG A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 LEU A 302 REMARK 465 SER A 303 REMARK 465 ALA A 304 REMARK 465 ARG A 305 REMARK 465 PHE A 306 REMARK 465 LEU A 307 REMARK 465 ARG A 308 REMARK 465 LYS A 309 REMARK 465 ILE A 310 REMARK 465 TYR A 311
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 67 CG CD OE1 OE2 REMARK 480 GLU A 262 CG CD OE1 OE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 122 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 GLU A 262 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 105 45.02 -83.86 REMARK 500 GLN A 187 -123.22 49.36 REMARK 500 ASN A 208 72.48 -164.06 REMARK 500 TYR A 245 55.77 -92.38 REMARK 500 ASP A 255 49.25 38.43 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 400 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 105 OD1 106.2 REMARK 620 3 ASP A 105 OD2 160.9 56.3 REMARK 620 4 HIS A 244 NE2 90.7 91.4 97.0 REMARK 620 5 UPF A 501 O1A 88.6 80.3 81.2 171.1 REMARK 620 6 UPF A 501 O1B 104.7 148.5 92.2 94.1 94.7 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DEL A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 400 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPF A 501
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G9R RELATED DB: PDB REMARK 900 1G9R CONTAINS THE SAME PROTEIN IN COMPLEX WITH THE DONOR REMARK 900 SUGAR ANALOG.
DBREF 1GA8 A 1 311 UNP P96945 P96945_NEIME 1 311
SEQADV 1GA8 MSE A 1 UNP P96945 MET 1 MODIFIED RESIDUE SEQADV 1GA8 SER A 128 UNP P96945 CYS 128 ENGINEERED SEQADV 1GA8 MSE A 145 UNP P96945 MET 145 MODIFIED RESIDUE SEQADV 1GA8 MSE A 172 UNP P96945 MET 172 MODIFIED RESIDUE SEQADV 1GA8 SER A 174 UNP P96945 CYS 174 ENGINEERED SEQADV 1GA8 MSE A 184 UNP P96945 MET 184 MODIFIED RESIDUE SEQADV 1GA8 MSE A 210 UNP P96945 MET 210 MODIFIED RESIDUE SEQADV 1GA8 MSE A 217 UNP P96945 MET 217 MODIFIED RESIDUE SEQADV 1GA8 MSE A 238 UNP P96945 MET 238 MODIFIED RESIDUE SEQADV 1GA8 PRO A 248 UNP P96945 SER 248 SEE REMARK 999 SEQADV 1GA8 ALA A 268 UNP P96945 GLY 268 SEE REMARK 999
SEQRES 1 A 311 MSE ASP ILE VAL PHE ALA ALA ASP ASP ASN TYR ALA ALA SEQRES 2 A 311 TYR LEU CYS VAL ALA ALA LYS SER VAL GLU ALA ALA HIS SEQRES 3 A 311 PRO ASP THR GLU ILE ARG PHE HIS VAL LEU ASP ALA GLY SEQRES 4 A 311 ILE SER GLU ALA ASN ARG ALA ALA VAL ALA ALA ASN LEU SEQRES 5 A 311 ARG GLY GLY GLY GLY ASN ILE ARG PHE ILE ASP VAL ASN SEQRES 6 A 311 PRO GLU ASP PHE ALA GLY PHE PRO LEU ASN ILE ARG HIS SEQRES 7 A 311 ILE SER ILE THR THR TYR ALA ARG LEU LYS LEU GLY GLU SEQRES 8 A 311 TYR ILE ALA ASP CYS ASP LYS VAL LEU TYR LEU ASP ILE SEQRES 9 A 311 ASP VAL LEU VAL ARG ASP SER LEU THR PRO LEU TRP ASP SEQRES 10 A 311 THR ASP LEU GLY ASP ASN TRP LEU GLY ALA SER ILE ASP SEQRES 11 A 311 LEU PHE VAL GLU ARG GLN GLU GLY TYR LYS GLN LYS ILE SEQRES 12 A 311 GLY MSE ALA ASP GLY GLU TYR TYR PHE ASN ALA GLY VAL SEQRES 13 A 311 LEU LEU ILE ASN LEU LYS LYS TRP ARG ARG HIS ASP ILE SEQRES 14 A 311 PHE LYS MSE SER SER GLU TRP VAL GLU GLN TYR LYS ASP SEQRES 15 A 311 VAL MSE GLN TYR GLN ASP GLN ASP ILE LEU ASN GLY LEU SEQRES 16 A 311 PHE LYS GLY GLY VAL CYS TYR ALA ASN SER ARG PHE ASN SEQRES 17 A 311 PHE MSE PRO THR ASN TYR ALA PHE MSE ALA ASN TRP PHE SEQRES 18 A 311 ALA SER ARG HIS THR ASP PRO LEU TYR ARG ASP ARG THR SEQRES 19 A 311 ASN THR VAL MSE PRO VAL ALA VAL SER HIS TYR CYS GLY SEQRES 20 A 311 PRO ALA LYS PRO TRP HIS ARG ASP CYS THR ALA TRP GLY SEQRES 21 A 311 ALA GLU ARG PHE THR GLU LEU ALA GLY SER LEU THR THR SEQRES 22 A 311 VAL PRO GLU GLU TRP ARG GLY LYS LEU ALA VAL PRO HIS SEQRES 23 A 311 ARG MET PHE SER THR LYS ARG MET LEU GLN ARG TRP ARG SEQRES 24 A 311 ARG LYS LEU SER ALA ARG PHE LEU ARG LYS ILE TYR
MODRES 1GA8 MSE A 1 MET SELENOMETHIONINE MODRES 1GA8 MSE A 145 MET SELENOMETHIONINE MODRES 1GA8 MSE A 172 MET SELENOMETHIONINE MODRES 1GA8 MSE A 184 MET SELENOMETHIONINE MODRES 1GA8 MSE A 210 MET SELENOMETHIONINE MODRES 1GA8 MSE A 217 MET SELENOMETHIONINE MODRES 1GA8 MSE A 238 MET SELENOMETHIONINE
HET MSE A 1 8 HET MSE A 145 8 HET MSE A 172 8 HET MSE A 184 8 HET MSE A 210 8 HET MSE A 217 8 HET MSE A 238 8 HET DEL A 500 22 HET MN A 400 1 HET UPF A 501 36
HETNAM MSE SELENOMETHIONINE HETNAM DEL 4-DEOXYLACTOSE HETNAM MN MANGANESE (II) ION HETNAM UPF URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE
HETSYN UPF URIDINE-5'-MONOPHOSPHATE 2-DEOXY-2-FLUORO- HETSYN 2 UPF GALACTOPYRANOSYL-MONOPHOSPHATE ESTER
FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 DEL C12 H22 O10 FORMUL 3 MN MN 2+ FORMUL 4 UPF C15 H23 F N2 O16 P2 FORMUL 5 HOH *191(H2 O)
HELIX 1 1 ASP A 8 ASN A 10 5 3 HELIX 2 2 TYR A 11 HIS A 26 1 16 HELIX 3 3 SER A 41 ASN A 51 1 11 HELIX 4 4 LEU A 52 GLY A 56 5 5 HELIX 5 5 ASN A 65 ALA A 70 5 6 HELIX 6 6 SER A 80 LEU A 87 5 8 HELIX 7 7 LYS A 88 ILE A 93 1 6 HELIX 8 8 LEU A 112 ASP A 117 1 6 HELIX 9 9 ASP A 130 ARG A 135 1 6 HELIX 10 10 GLY A 138 ILE A 143 1 6 HELIX 11 11 ASN A 160 ARG A 165 1 6 HELIX 12 12 ASP A 168 LYS A 181 1 14 HELIX 13 13 GLN A 187 LYS A 197 1 11 HELIX 14 14 ASN A 204 ASN A 208 5 5 HELIX 15 15 MSE A 210 PHE A 216 1 7 HELIX 16 16 ASP A 227 ASN A 235 1 9 HELIX 17 17 ALA A 261 GLY A 269 1 9 HELIX 18 18 PRO A 275 ARG A 279 5 5
SHEET 1 A 7 ILE A 59 ASP A 63 0 SHEET 2 A 7 ARG A 32 ASP A 37 1 O PHE A 33 N ARG A 60 SHEET 3 A 7 ASP A 2 ALA A 7 1 O ILE A 3 N HIS A 34 SHEET 4 A 7 VAL A 99 LEU A 102 1 N LEU A 100 O ASP A 2 SHEET 5 A 7 PHE A 152 ILE A 159 -1 O LEU A 157 N TYR A 101 SHEET 6 A 7 LEU A 125 ILE A 129 -1 O GLY A 126 N LEU A 158 SHEET 7 A 7 VAL A 200 ALA A 203 1 N CYS A 201 O LEU A 125 SHEET 1 B 2 VAL A 106 VAL A 108 0 SHEET 2 B 2 VAL A 242 HIS A 244 -1 N SER A 243 O LEU A 107
LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK C GLY A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N ALA A 146 1555 1555 1.33 LINK C LYS A 171 N MSE A 172 1555 1555 1.33 LINK C MSE A 172 N SER A 173 1555 1555 1.33 LINK C VAL A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N GLN A 185 1555 1555 1.33 LINK C PHE A 209 N MSE A 210 1555 1555 1.33 LINK C MSE A 210 N PRO A 211 1555 1555 1.34 LINK C PHE A 216 N MSE A 217 1555 1555 1.33 LINK C VAL A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N PRO A 239 1555 1555 1.35 LINK MN MN A 400 OD1 ASP A 103 1555 1555 2.24 LINK MN MN A 400 OD1 ASP A 105 1555 1555 2.22 LINK MN MN A 400 OD2 ASP A 105 1555 1555 2.41 LINK MN MN A 400 NE2 HIS A 244 1555 1555 2.28 LINK MN MN A 400 O1A UPF A 501 1555 1555 2.25 LINK MN MN A 400 O1B UPF A 501 1555 1555 2.24
CISPEP 1 MSE A 238 PRO A 239 0 -0.24
SITE 1 AC1 12 ILE A 76 HIS A 78 ASP A 130 VAL A 133 SITE 2 AC1 12 GLN A 189 PRO A 211 CYS A 246 GLY A 247 SITE 3 AC1 12 UPF A 501 HOH A 601 HOH A 752 HOH A 767 SITE 1 AC2 4 ASP A 103 ASP A 105 HIS A 244 UPF A 501 SITE 1 AC3 28 ALA A 6 ALA A 7 ASP A 8 ASN A 10 SITE 2 AC3 28 TYR A 11 HIS A 78 ILE A 79 SER A 80 SITE 3 AC3 28 THR A 83 ARG A 86 ASP A 103 ILE A 104 SITE 4 AC3 28 ASP A 105 ASN A 153 ALA A 154 GLY A 155 SITE 5 AC3 28 TYR A 186 GLN A 187 ASP A 188 GLN A 189 SITE 6 AC3 28 HIS A 244 CYS A 246 GLY A 247 LYS A 250 SITE 7 AC3 28 MN A 400 DEL A 500 HOH A 628 HOH A 790
CRYST1 39.975 76.158 87.228 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025016 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013131 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011464 0.00000