10 20 30 40 50 60 70 80 1G9M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN/IMMUNE SYSTEM 24-NOV-00 1G9M
TITLE HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED TITLE 2 NEUTRALIZING ANTIBODY 17B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 3 CHAIN: G; COMPND 4 FRAGMENT: CORE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD4; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ANTIBODY 17B, LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 FRAGMENT: ANTIGEN-BINDING FRAGMENT, FAB; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: ANTIBODY 17B, HEAVY CHAIN; COMPND 20 CHAIN: H; COMPND 21 FRAGMENT: ANTIGEN-BINDING FRAGMENT, FAB; COMPND 22 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: CLADE B; SOURCE 5 VARIANT: LABORATORY-ADAPTED ISOLATE HXBC2; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 OTHER_DETAILS: SECRETED FROM DROSOPHILA SCHNEIDER 2 LINES UNDER SOURCE 10 CONTROL OF AN INDUCIBLE METALLOTHIONEIN PROMOTER; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 18 EXPRESSION_SYSTEM_CELL: OVARY CELLS (CHO); SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 24 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 26 OTHER_DETAILS: EPSTEIN-BARR VIRUS IMMORTALIZED B-CELL CLONE FUSED SOURCE 27 WITH A MURINE B-CELL FUSION PARTNER; SOURCE 28 MOL_ID: 4; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_COMMON: HUMAN; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 33 EXPRESSION_SYSTEM_COMMON: HOUSE MOUSE; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 35 OTHER_DETAILS: EPSTEIN-BARR VIRUS IMMORTALIZED B-CELL CLONE FUSED SOURCE 36 WITH A MURINE B-CELL FUSION PARTNER
KEYWDS COMPLEX (HIV ENVELOPE PROTEIN-CD4-FAB), HIV-1 EXTERIOR ENVELOPE GP120 KEYWDS 2 FROM LABORATORY-ADAPTED ISOLATE, HXBC2, SURFACE T-CELL GLYCOPROTEIN KEYWDS 3 CD4, ANTIGEN-BINDING FRAGMENT OF HUMAN IMMUNOGLOBULIN 17B, VIRAL KEYWDS 4 PROTEIN-IMMUNE SYSTEM COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR P.D.KWONG,R.WYATT,S.MAJEED,J.ROBINSON,R.W.SWEET,J.SODROSKI, AUTHOR 2 W.A.HENDRICKSON
REVDAT 3 13-JUL-11 1G9M 1 VERSN REVDAT 2 24-FEB-09 1G9M 1 VERSN REVDAT 1 27-DEC-00 1G9M 0
JRNL AUTH P.D.KWONG,R.WYATT,S.MAJEED,J.ROBINSON,R.W.SWEET,J.SODROSKI, JRNL AUTH 2 W.A.HENDRICKSON JRNL TITL STRUCTURES OF HIV-1 GP120 ENVELOPE GLYCOPROTEINS FROM JRNL TITL 2 LABORATORY-ADAPTED AND PRIMARY ISOLATES. JRNL REF STRUCTURE FOLD.DES. V. 8 1329 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11188697 JRNL DOI 10.1016/S0969-2126(00)00547-5
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.KWONG,R.WYATT,J.ROBINSON,R.W.SWEET,J.SODROSKI, REMARK 1 AUTH 2 W.A.HENDRICKSON REMARK 1 TITL STRUCTURE OF AN HIV GP120 ENVELOPE GLYCOPROTEIN IN COMPLEX REMARK 1 TITL 2 WITH THE CD4 RECEPTOR AND A NEUTRALIZING HUMAN ANTIBODY REMARK 1 REF NATURE V. 393 648 1998 REMARK 1 REFN ISSN 0028-0836 REMARK 1 DOI 10.1038/31405
REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 55781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3946 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 787 REMARK 3 BIN R VALUE (WORKING SET) : 0.4339 REMARK 3 BIN FREE R VALUE : 0.4312 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.058 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 953 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.26800 REMARK 3 B22 (A**2) : 1.01000 REMARK 3 B33 (A**2) : 7.25800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.70 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.87 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.700 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.940 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.060 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.130 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 52.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS-PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS-WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS-CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : CNS-ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS-PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS-WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : CNS-CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : CNS-ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: OVERALL ANISOTROPIC B VALUE CORRECTION REMARK 3 APPLIED TO DATA DURING CNS REFINEMENT
REMARK 4 REMARK 4 1G9M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-00. REMARK 100 THE RCSB ID CODE IS RCSB012405.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-96 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.350 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 200 DATA REDUNDANCY : 2.470 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : 0.14500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: THIS DEPOSIT IS THE REMARK 200 REFINEMENT OF THE PREVIOUSLY DETERMINED 1GC1 STRUCTURE REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1GC1 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION CRYSTALLIZATION: 0.5 REMARK 280 UL OF PROTEIN (~10MG/ML IN 350 MM NACL, 5 MM TRISCL PH 7.0) + 0.4 REMARK 280 UL OF 0.1 M NACITRATE, 0.02 M NAHEPES, 10% ISOPROPANOL, 10.5% REMARK 280 MONOMETHYL-PEG 5000, 0.0075% SEAPREP AGAROSE, PH 6.4 OVER A REMARK 280 RESERVOIR OF 0.35 M NACL, 0.1 M NACITRATE, 0.02 M NAHEPES, 10% REMARK 280 ISOPROPANOL, 10.5% MONOMETHYL-PEG 5000, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, C, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY G 79 REMARK 465 ALA G 80 REMARK 465 ARG G 81 REMARK 465 SER G 82 REMARK 465 SER G 398 REMARK 465 THR G 399 REMARK 465 TRP G 400 REMARK 465 SER G 401 REMARK 465 THR G 402 REMARK 465 GLU G 403 REMARK 465 GLY G 404 REMARK 465 SER G 405 REMARK 465 ASN G 406 REMARK 465 ASN G 407 REMARK 465 THR G 408 REMARK 465 GLU G 409 REMARK 465 ALA C 182 REMARK 465 SER C 183 REMARK 465 ASN C 184 REMARK 465 THR C 185
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET G 426 O HOH G 1049 2.11 REMARK 500 OG SER H 168 O HOH H 295 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN G 94 92.30 -172.80 REMARK 500 SER G 115 -68.50 -106.58 REMARK 500 VAL G 120 141.68 -171.37 REMARK 500 LEU G 125 74.82 -174.68 REMARK 500 VAL G 127 10.92 -68.15 REMARK 500 ALA G 129 29.72 -75.54 REMARK 500 GLN G 258 -5.71 55.29 REMARK 500 GLU G 267 -74.86 -58.24 REMARK 500 GLU G 268 -102.13 -62.87 REMARK 500 ASN G 276 103.14 -170.53 REMARK 500 PHE G 353 -93.02 -102.51 REMARK 500 ASN G 392 79.54 -150.87 REMARK 500 PHE G 396 73.77 53.52 REMARK 500 ASP G 412 -73.74 -146.89 REMARK 500 ARG G 419 128.45 -175.22 REMARK 500 ASN G 462 -90.38 -75.64 REMARK 500 SER G 465 145.89 179.02 REMARK 500 LYS G 487 139.47 -171.71 REMARK 500 CYS C 16 101.19 -174.10 REMARK 500 LYS C 21 51.42 -94.25 REMARK 500 ASN C 30 -154.03 -103.53 REMARK 500 GLN C 33 19.93 55.34 REMARK 500 ILE C 36 -68.86 -96.04 REMARK 500 PRO C 48 11.97 -57.31 REMARK 500 ASN C 52 -73.53 -44.80 REMARK 500 ASP C 53 5.37 -67.64 REMARK 500 ASP C 80 171.67 176.34 REMARK 500 GLU C 87 52.81 31.55 REMARK 500 VAL C 93 128.14 -170.90 REMARK 500 HIS C 107 91.90 -56.28 REMARK 500 PRO C 122 151.05 -46.00 REMARK 500 SER C 124 124.27 -171.08 REMARK 500 LYS C 142 -34.47 -148.22 REMARK 500 PHE C 179 179.03 -57.12 REMARK 500 GLN C 180 -159.93 -118.43 REMARK 500 SER L 30 -119.95 60.51 REMARK 500 ALA L 51 -21.77 71.14 REMARK 500 SER L 52 -5.37 -146.24 REMARK 500 PRO L 59 156.70 -46.85 REMARK 500 SER L 76 -92.79 -46.64 REMARK 500 ALA L 84 -173.46 -172.61 REMARK 500 PRO L 95 150.31 -42.21 REMARK 500 ASN L 140 79.02 46.33 REMARK 500 SER L 158 137.96 -177.65 REMARK 500 GLU L 189 14.18 -66.89 REMARK 500 LYS L 192 -79.19 -93.03 REMARK 500 SER L 204 -74.86 -52.18 REMARK 500 ALA H 9 152.95 -48.86 REMARK 500 ASP H 27 -160.85 -161.53 REMARK 500 ASP H 56 34.83 70.00 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 233 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH C 244 DISTANCE = 5.72 ANGSTROMS REMARK 525 HOH C 247 DISTANCE = 5.80 ANGSTROMS REMARK 525 HOH C 249 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH C 259 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH C 262 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH C 272 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C 281 DISTANCE = 5.74 ANGSTROMS REMARK 525 HOH C 311 DISTANCE = 8.82 ANGSTROMS REMARK 525 HOH C 312 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH C 315 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH C 318 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH C 321 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH G1115 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH G1126 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH G1140 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH G1173 DISTANCE = 10.07 ANGSTROMS REMARK 525 HOH G1189 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH G1196 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH G1210 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH G1211 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH G1217 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH G1230 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH G1243 DISTANCE = 9.40 ANGSTROMS REMARK 525 HOH G1281 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH G1305 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH G1312 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH G1316 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH G1318 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH G1323 DISTANCE = 5.53 ANGSTROMS REMARK 525 HOH H 256 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH H 257 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH H 353 DISTANCE = 5.70 ANGSTROMS REMARK 525 HOH H 375 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH H 398 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH H 406 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH H 413 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH H 421 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH H 424 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH H 432 DISTANCE = 5.50 ANGSTROMS REMARK 525 HOH H 448 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH H 467 DISTANCE = 5.79 ANGSTROMS REMARK 525 HOH L 249 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH L 259 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH L 270 DISTANCE = 12.73 ANGSTROMS REMARK 525 HOH L 317 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH L 350 DISTANCE = 5.26 ANGSTROMS REMARK 525 HOH L 359 DISTANCE = 5.01 ANGSTROMS REMARK 525 HOH L 365 DISTANCE = 5.60 ANGSTROMS REMARK 525 HOH L 373 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH L 383 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH L 393 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH L 395 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH L 396 DISTANCE = 10.88 ANGSTROMS REMARK 525 HOH L 402 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH L 410 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH L 413 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH L 414 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH L 421 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH L 422 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH L 433 DISTANCE = 5.42 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDG G 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 697 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDG G 730 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 734 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDG G 741 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 762 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 776 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 789 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 795 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC G 796 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 839 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 886 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 892 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 948 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG G 963 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUC G 964 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA G 1000
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GC1 RELATED DB: PDB REMARK 900 THIS ENTRY IS THE 2.2 A REFINEMENT OF 1GC1 REMARK 900 RELATED ID: 1G9N RELATED DB: PDB REMARK 900 1G9N CONTAINS THE SAME TERNARY COMPLEX FROM A PRIMARY REMARK 900 ISOLATE
DBREF 1G9M G 83 127 UNP P04578 ENV_HV1H2 83 127 DBREF 1G9M G 195 297 UNP P04578 ENV_HV1H2 195 297 DBREF 1G9M G 330 492 UNP P04578 ENV_HV1H2 330 492 DBREF 1G9M C 1 185 UNP P01730 CD4_HUMAN 26 210 DBREF 1G9M L 1 214 PDB 1G9M 1G9M 1 214 DBREF 1G9M H 1 229 PDB 1G9M 1G9M 1 229
SEQADV 1G9M GLY G 79 UNP P04578 CLONING ARTIFACT SEQADV 1G9M ALA G 80 UNP P04578 CLONING ARTIFACT SEQADV 1G9M ARG G 81 UNP P04578 CLONING ARTIFACT SEQADV 1G9M SER G 82 UNP P04578 CLONING ARTIFACT SEQADV 1G9M GLY G 128 UNP P04578 SEE REMARK 999 SEQADV 1G9M ALA G 129 UNP P04578 SEE REMARK 999 SEQADV 1G9M GLY G 194 UNP P04578 SEE REMARK 999 SEQADV 1G9M GLY G 298 UNP P04578 SEE REMARK 999 SEQADV 1G9M ALA G 299 UNP P04578 SEE REMARK 999 SEQADV 1G9M GLY G 329 UNP P04578 SEE REMARK 999 SEQADV 1G9M ASN C 184 UNP P01730 SER 209 ENGINEERED SEQADV 1G9M THR C 185 UNP P01730 ILE 210 ENGINEERED
SEQRES 1 G 321 GLY ALA ARG SER GLU VAL VAL LEU VAL ASN VAL THR GLU SEQRES 2 G 321 ASN PHE ASN MET TRP LYS ASN ASP MET VAL GLU GLN MET SEQRES 3 G 321 HIS GLU ASP ILE ILE SER LEU TRP ASP GLN SER LEU LYS SEQRES 4 G 321 PRO CYS VAL LYS LEU THR PRO LEU CYS VAL GLY ALA GLY SEQRES 5 G 321 SER CYS ASN THR SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 6 G 321 VAL SER PHE GLU PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 7 G 321 ALA GLY PHE ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 8 G 321 ASN GLY THR GLY PRO CYS THR ASN VAL SER THR VAL GLN SEQRES 9 G 321 CYS THR HIS GLY ILE ARG PRO VAL VAL SER THR GLN LEU SEQRES 10 G 321 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU VAL VAL ILE SEQRES 11 G 321 ARG SER VAL ASN PHE THR ASP ASN ALA LYS THR ILE ILE SEQRES 12 G 321 VAL GLN LEU ASN THR SER VAL GLU ILE ASN CYS THR GLY SEQRES 13 G 321 ALA GLY HIS CYS ASN ILE SER ARG ALA LYS TRP ASN ASN SEQRES 14 G 321 THR LEU LYS GLN ILE ALA SER LYS LEU ARG GLU GLN PHE SEQRES 15 G 321 GLY ASN ASN LYS THR ILE ILE PHE LYS GLN SER SER GLY SEQRES 16 G 321 GLY ASP PRO GLU ILE VAL THR HIS SER PHE ASN CYS GLY SEQRES 17 G 321 GLY GLU PHE PHE TYR CYS ASN SER THR GLN LEU PHE ASN SEQRES 18 G 321 SER THR TRP PHE ASN SER THR TRP SER THR GLU GLY SER SEQRES 19 G 321 ASN ASN THR GLU GLY SER ASP THR ILE THR LEU PRO CYS SEQRES 20 G 321 ARG ILE LYS GLN ILE ILE ASN MET TRP GLN LYS VAL GLY SEQRES 21 G 321 LYS ALA MET TYR ALA PRO PRO ILE SER GLY GLN ILE ARG SEQRES 22 G 321 CYS SER SER ASN ILE THR GLY LEU LEU LEU THR ARG ASP SEQRES 23 G 321 GLY GLY ASN SER ASN ASN GLU SER GLU ILE PHE ARG PRO SEQRES 24 G 321 GLY GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU LEU SEQRES 25 G 321 TYR LYS TYR LYS VAL VAL LYS ILE GLU SEQRES 1 C 185 LYS LYS VAL VAL LEU GLY LYS LYS GLY ASP THR VAL GLU SEQRES 2 C 185 LEU THR CYS THR ALA SER GLN LYS LYS SER ILE GLN PHE SEQRES 3 C 185 HIS TRP LYS ASN SER ASN GLN ILE LYS ILE LEU GLY ASN SEQRES 4 C 185 GLN GLY SER PHE LEU THR LYS GLY PRO SER LYS LEU ASN SEQRES 5 C 185 ASP ARG ALA ASP SER ARG ARG SER LEU TRP ASP GLN GLY SEQRES 6 C 185 ASN PHE PRO LEU ILE ILE LYS ASN LEU LYS ILE GLU ASP SEQRES 7 C 185 SER ASP THR TYR ILE CYS GLU VAL GLU ASP GLN LYS GLU SEQRES 8 C 185 GLU VAL GLN LEU LEU VAL PHE GLY LEU THR ALA ASN SER SEQRES 9 C 185 ASP THR HIS LEU LEU GLN GLY GLN SER LEU THR LEU THR SEQRES 10 C 185 LEU GLU SER PRO PRO GLY SER SER PRO SER VAL GLN CYS SEQRES 11 C 185 ARG SER PRO ARG GLY LYS ASN ILE GLN GLY GLY LYS THR SEQRES 12 C 185 LEU SER VAL SER GLN LEU GLU LEU GLN ASP SER GLY THR SEQRES 13 C 185 TRP THR CYS THR VAL LEU GLN ASN GLN LYS LYS VAL GLU SEQRES 14 C 185 PHE LYS ILE ASP ILE VAL VAL LEU ALA PHE GLN LYS ALA SEQRES 15 C 185 SER ASN THR SEQRES 1 L 214 GLU LEU GLU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLU SER VAL SER SER ASP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 214 THR ARG ALA THR GLY VAL PRO ALA ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY ALA GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASN ASN TRP PRO PRO ARG TYR THR PHE GLY GLN GLY THR SEQRES 9 L 214 ARG LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 214 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 214 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 214 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 214 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN LYS SEQRES 14 L 214 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 214 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 214 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 214 LYS SER PHE ASN ARG GLY SEQRES 1 H 229 GLN VAL GLN LEU LEU GLU SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 229 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 229 ASP THR PHE ILE ARG TYR SER PHE THR TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY ARG ILE ILE SEQRES 5 H 229 THR ILE LEU ASP VAL ALA HIS TYR ALA PRO HIS LEU GLN SEQRES 6 H 229 GLY ARG VAL THR ILE THR ALA ASP LYS SER THR SER THR SEQRES 7 H 229 VAL TYR LEU GLU LEU ARG ASN LEU ARG SER ASP ASP THR SEQRES 8 H 229 ALA VAL TYR PHE CYS ALA GLY VAL TYR GLU GLY GLU ALA SEQRES 9 H 229 ASP GLU GLY GLU TYR ARG ASN ASN GLY PHE LEU LYS HIS SEQRES 10 H 229 TRP GLY GLN GLY THR LEU VAL THR VAL THR SER ALA SER SEQRES 11 H 229 THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER SEQRES 12 H 229 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 229 VAL LYS ASP TYR PHE PRO GLN PRO VAL THR VAL SER TRP SEQRES 14 H 229 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 229 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 229 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 229 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 229 VAL ASP LYS LYS VAL GLU PRO LYS
MODRES 1G9M ASN G 262 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 230 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 241 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 234 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 339 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 276 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 88 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 392 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 463 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 197 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 386 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 295 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 289 ASN GLYCOSYLATION SITE MODRES 1G9M ASN G 448 ASN GLYCOSYLATION SITE
HET NDG G 588 14 HET NAG G 697 14 HET NDG G 730 14 HET NAG G 734 14 HET NDG G 741 14 HET NAG G 762 14 HET NAG G 776 14 HET NAG G 789 14 HET NAG G 795 14 HET FUC G 796 10 HET NAG G 839 14 HET NAG G 886 14 HET NAG G 892 14 HET NAG G 948 14 HET NAG G 963 14 HET FUC G 964 10 HET IPA G1000 4
HETNAM NDG 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM FUC ALPHA-L-FUCOSE HETNAM IPA ISOPROPYL ALCOHOL
HETSYN IPA 2-PROPANOL
FORMUL 5 NDG 3(C8 H15 N O6) FORMUL 6 NAG 11(C8 H15 N O6) FORMUL 13 FUC 2(C6 H12 O5) FORMUL 19 IPA C3 H8 O FORMUL 20 HOH *953(H2 O)
HELIX 1 1 ASN G 98 GLN G 114 1 17 HELIX 2 2 ARG G 335 PHE G 353 1 19 HELIX 3 3 ASP G 368 THR G 373 1 6 HELIX 4 4 SER G 387 PHE G 391 5 5 HELIX 5 5 ASP G 474 TYR G 484 1 11 HELIX 6 6 LEU C 51 ASP C 53 5 3 HELIX 7 7 ARG C 58 GLY C 65 5 8 HELIX 8 8 LYS C 75 SER C 79 5 5 HELIX 9 9 GLU C 150 SER C 154 5 5 HELIX 10 10 GLN L 79 PHE L 83 5 5 HELIX 11 11 SER L 123 LYS L 128 1 6 HELIX 12 12 SER L 184 GLU L 189 1 6 HELIX 13 13 THR H 28 ILE H 30 5 3 HELIX 14 14 ARG H 87 THR H 91 5 5 HELIX 15 15 GLU H 103 GLY H 107 5 5 HELIX 16 16 SER H 171 ALA H 173 5 3 HELIX 17 17 SER H 202 LEU H 204 5 3
SHEET 1 A 2 THR G 90 PHE G 93 0 SHEET 2 A 2 GLY G 237 CYS G 239 -1 SHEET 1 B 4 SER G 195 ILE G 201 0 SHEET 2 B 4 VAL G 120 THR G 123 -1 SHEET 3 B 4 LYS G 432 MET G 434 -1 SHEET 4 B 4 ILE G 423 ASN G 425 -1 SHEET 1 C 2 ILE G 215 ALA G 219 0 SHEET 2 C 2 CYS G 247 ILE G 251 -1 SHEET 1 D 4 VAL G 84 VAL G 85 0 SHEET 2 D 4 THR G 236 VAL G 245 -1 SHEET 3 D 4 PHE G 223 CYS G 228 -1 SHEET 4 D 4 TYR G 486 LYS G 490 -1 SHEET 1 E 7 LEU G 260 LEU G 261 0 SHEET 2 E 7 ARG G 444 ILE G 449 1 SHEET 3 E 7 SER G 291 THR G 297 -1 SHEET 4 E 7 HIS G 330 SER G 334 -1 SHEET 5 E 7 THR G 413 LYS G 421 -1 SHEET 6 E 7 GLU G 381 CYS G 385 -1 SHEET 7 E 7 HIS G 374 CYS G 378 -1 SHEET 1 F 6 VAL G 271 ARG G 273 0 SHEET 2 F 6 ILE G 284 THR G 290 -1 SHEET 3 F 6 THR G 450 ARG G 456 -1 SHEET 4 F 6 GLU G 466 PRO G 470 -1 SHEET 5 F 6 ILE G 359 PHE G 361 1 SHEET 6 F 6 SER G 393 TRP G 395 -1 SHEET 1 G 3 VAL C 12 LEU C 14 0 SHEET 2 G 3 LEU C 69 ILE C 71 -1 N LEU C 69 O LEU C 14 SHEET 3 G 3 ALA C 55 ASP C 56 -1 O ASP C 56 N ILE C 70 SHEET 1 H10 GLY G 366 GLY G 367 0 SHEET 2 H10 PHE C 43 LYS C 46 -1 O LEU C 44 N GLY G 367 SHEET 3 H10 LYS C 35 GLN C 40 -1 O GLY C 38 N THR C 45 SHEET 4 H10 PHE C 26 LYS C 29 -1 O PHE C 26 N ASN C 39 SHEET 5 H10 THR C 81 VAL C 86 -1 N ILE C 83 O LYS C 29 SHEET 6 H10 GLU C 91 ALA C 102 -1 N GLU C 91 O CYS C 84 SHEET 7 H10 VAL C 3 LYS C 7 1 N VAL C 4 O GLN C 94 SHEET 8 H10 GLU C 91 ALA C 102 1 O GLN C 94 N VAL C 4 SHEET 9 H10 LEU C 114 GLU C 119 -1 N THR C 117 O THR C 101 SHEET 10 H10 THR C 143 VAL C 146 -1 O LEU C 144 N LEU C 116 SHEET 1 I 5 HIS C 107 LEU C 109 0 SHEET 2 I 5 LYS C 166 LEU C 177 1 O VAL C 175 N LEU C 108 SHEET 3 I 5 GLY C 155 GLN C 163 -1 N GLY C 155 O ILE C 174 SHEET 4 I 5 SER C 127 ARG C 131 -1 N SER C 127 O LEU C 162 SHEET 5 I 5 ASN C 137 GLY C 140 -1 N ILE C 138 O CYS C 130 SHEET 1 J 4 LEU L 4 GLN L 6 0 SHEET 2 J 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 J 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 J 4 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 K 8 THR L 10 VAL L 13 0 SHEET 2 K 8 THR L 104 ILE L 108 1 O ARG L 105 N LEU L 11 SHEET 3 K 8 ALA L 84 GLN L 90 -1 O ALA L 84 N LEU L 106 SHEET 4 K 8 THR L 99 PHE L 100 -1 O THR L 99 N GLN L 90 SHEET 5 K 8 ALA L 84 GLN L 90 -1 N GLN L 90 O THR L 99 SHEET 6 K 8 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 7 K 8 ARG L 45 TYR L 49 -1 N ARG L 45 O GLN L 37 SHEET 8 K 8 THR L 53 ARG L 54 -1 N THR L 53 O TYR L 49 SHEET 1 L 4 SER L 116 PHE L 120 0 SHEET 2 L 4 ALA L 132 PHE L 141 -1 O VAL L 135 N PHE L 120 SHEET 3 L 4 TYR L 175 LEU L 183 -1 O TYR L 175 N PHE L 141 SHEET 4 L 4 SER L 161 VAL L 165 -1 O GLN L 162 N THR L 180 SHEET 1 M 4 ALA L 155 LEU L 156 0 SHEET 2 M 4 LYS L 147 VAL L 152 -1 N VAL L 152 O ALA L 155 SHEET 3 M 4 VAL L 193 THR L 199 -1 N ALA L 195 O LYS L 151 SHEET 4 M 4 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SHEET 1 N 8 ALA H 58 TYR H 60 0 SHEET 2 N 8 GLU H 46 ILE H 51 -1 O ARG H 50 N HIS H 59 SHEET 3 N 8 TYR H 32 GLN H 39 -1 O PHE H 34 N ILE H 51 SHEET 4 N 8 ALA H 92 TYR H 100 -1 N VAL H 93 O GLN H 39 SHEET 5 N 8 HIS H 117 TRP H 118 -1 O HIS H 117 N GLY H 98 SHEET 6 N 8 ALA H 92 TYR H 100 -1 N GLY H 98 O HIS H 117 SHEET 7 N 8 THR H 122 VAL H 126 -1 O THR H 122 N TYR H 94 SHEET 8 N 8 GLU H 10 LYS H 12 1 N GLU H 10 O LEU H 123 SHEET 1 O 4 VAL H 68 ALA H 72 0 SHEET 2 O 4 THR H 78 LEU H 83 -1 N TYR H 80 O THR H 71 SHEET 3 O 4 VAL H 18 SER H 25 -1 N VAL H 18 O LEU H 83 SHEET 4 O 4 GLN H 3 GLU H 6 -1 N GLN H 3 O SER H 25 SHEET 1 P 6 VAL H 178 THR H 180 0 SHEET 2 P 6 TYR H 191 PRO H 200 -1 N VAL H 196 O HIS H 179 SHEET 3 P 6 VAL H 184 LEU H 185 -1 N VAL H 184 O SER H 192 SHEET 4 P 6 TYR H 191 PRO H 200 -1 O SER H 192 N VAL H 184 SHEET 5 P 6 THR H 150 TYR H 160 -1 N ALA H 151 O VAL H 199 SHEET 6 P 6 SER H 135 LEU H 139 -1 N SER H 135 O LYS H 158 SHEET 1 Q 3 THR H 166 TRP H 169 0 SHEET 2 Q 3 ILE H 210 HIS H 215 -1 N ASN H 212 O SER H 168 SHEET 3 Q 3 THR H 220 LYS H 225 -1 N THR H 220 O HIS H 215
SSBOND 1 CYS G 119 CYS G 205 1555 1555 2.04 SSBOND 2 CYS G 126 CYS G 196 1555 1555 2.03 SSBOND 3 CYS G 218 CYS G 247 1555 1555 2.04 SSBOND 4 CYS G 228 CYS G 239 1555 1555 2.04 SSBOND 5 CYS G 296 CYS G 331 1555 1555 2.04 SSBOND 6 CYS G 378 CYS G 445 1555 1555 2.03 SSBOND 7 CYS G 385 CYS G 418 1555 1555 2.04 SSBOND 8 CYS C 16 CYS C 84 1555 1555 2.04 SSBOND 9 CYS C 130 CYS C 159 1555 1555 2.03 SSBOND 10 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 11 CYS L 136 CYS L 196 1555 1555 2.03 SSBOND 12 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 13 CYS H 155 CYS H 211 1555 1555 2.03
LINK O6 NAG G 963 C1 FUC G 964 1555 1555 1.40 LINK C1 FUC G 796 O6 NAG G 795 1555 1555 1.41 LINK C1 NAG G 762 ND2 ASN G 262 1555 1555 1.45 LINK ND2 ASN G 230 C1 NDG G 730 1555 1555 1.45 LINK C1 NDG G 741 ND2 ASN G 241 1555 1555 1.45 LINK C1 NAG G 734 ND2 ASN G 234 1555 1555 1.45 LINK ND2 ASN G 339 C1 NAG G 839 1555 1555 1.45 LINK C1 NAG G 776 ND2 ASN G 276 1555 1555 1.45 LINK C1 NDG G 588 ND2 ASN G 88 1555 1555 1.45 LINK ND2 ASN G 392 C1 NAG G 892 1555 1555 1.45 LINK ND2 ASN G 463 C1 NAG G 963 1555 1555 1.45 LINK C1 NAG G 697 ND2 ASN G 197 1555 1555 1.45 LINK ND2 ASN G 386 C1 NAG G 886 1555 1555 1.45 LINK ND2 ASN G 295 C1 NAG G 795 1555 1555 1.46 LINK ND2 ASN G 289 C1 NAG G 789 1555 1555 1.46 LINK C1 NAG G 948 ND2 ASN G 448 1555 1555 1.46
CISPEP 1 TRP L 94 PRO L 95 0 -0.27 CISPEP 2 TYR L 142 PRO L 143 0 -0.31 CISPEP 3 PHE H 161 PRO H 162 0 -0.27 CISPEP 4 GLN H 163 PRO H 164 0 -0.41
SITE 1 AC1 2 ASN G 88 HOH G1322 SITE 1 AC2 2 VAL G 127 ASN G 197 SITE 1 AC3 6 ASN G 230 THR G 232 PRO G 238 CYS G 239 SITE 2 AC3 6 THR G 240 ASN G 241 SITE 1 AC4 8 PHE G 233 ASN G 234 THR G 236 PRO G 238 SITE 2 AC4 8 HOH G1037 HOH G1076 HOH G1309 HOH G1324 SITE 1 AC5 4 LEU G 86 ASN G 229 ASN G 241 HOH G1329 SITE 1 AC6 7 ARG G 252 ASN G 262 SER G 446 SER G 447 SITE 2 AC6 7 HOH G1045 HOH G1293 THR L 56 SITE 1 AC7 7 ASN G 276 THR G 278 ASP G 279 HOH G1145 SITE 2 AC7 7 HOH G1299 HOH G1308 ASN L 212 SITE 1 AC8 7 GLU G 268 GLU G 269 VAL G 270 ASN G 289 SITE 2 AC8 7 GLN G 344 HOH G1132 HOH G1311 SITE 1 AC9 13 GLU G 293 ASN G 295 ASN G 332 SER G 334 SITE 2 AC9 13 FUC G 796 HOH G1077 HOH G1123 HOH G1326 SITE 3 AC9 13 GLN H 1 ASP H 27 TYR H 100 HOH H 341 SITE 4 AC9 13 HOH H 452 SITE 1 BC1 6 ARG G 444 NAG G 795 GLN H 1 TYR H 100 SITE 2 BC1 6 LYS H 116 HIS H 117 SITE 1 BC2 4 ASN G 339 LYS G 343 TRP G 395 HOH G1162 SITE 1 BC3 3 ASN G 386 THR G 388 GLN G 389 SITE 1 BC4 4 ASN G 392 HOH G1187 HOH G1193 HOH G1328 SITE 1 BC5 7 SER G 291 SER G 446 ASN G 448 HOH G1157 SITE 2 BC5 7 HOH G1292 HOH G1330 GLN H 1 SITE 1 BC6 2 ASN G 463 FUC G 964 SITE 1 BC7 2 NAG G 963 HOH G1239 SITE 1 BC8 4 SER G 375 PHE G 376 PHE G 382 HOH G1111
CRYST1 71.250 88.110 196.540 90.00 90.00 90.00 P 2 2 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014035 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011349 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005088 0.00000