10 20 30 40 50 60 70 80 1G93 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 22-NOV-00 1G93
TITLE CRYSTAL STRUCTURE OF THE BOVINE CATALYTIC DOMAIN OF ALPHA-1, TITLE 2 3-GALACTOSYLTRANSFERASE IN THE PRESENCE OF UDP-GALACTOSE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLLACTOSAMINIDE ALPHA-1,3- COMPND 3 GALACTOSYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CATALYTIC DOMAIN; COMPND 6 SYNONYM: 13GALT, ALPHA-1,3-GALACTOSYLTRANSFERASE; COMPND 7 EC: 2.4.1.151; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: GGTA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS ALPHA-BETA-ALPHA, UDP BINDING PROTEIN, GLYCOSYLTRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR L.N.GASTINEL,C.BIGNON,A.K.MISRA,O.HINDSGAUL,J.H.SHAPER, AUTHOR 2 D.H.JOZIASSE
REVDAT 3 24-FEB-09 1G93 1 VERSN REVDAT 2 01-APR-03 1G93 1 JRNL REVDAT 1 20-MAY-01 1G93 0
JRNL AUTH L.N.GASTINEL,C.BIGNON,A.K.MISRA,O.HINDSGAUL, JRNL AUTH 2 J.H.SHAPER,D.H.JOZIASSE JRNL TITL BOVINE ALPHA1,3-GALACTOSYLTRANSFERASE CATALYTIC JRNL TITL 2 DOMAIN STRUCTURE AND ITS RELATIONSHIP WITH ABO JRNL TITL 3 HISTO-BLOOD GROUP AND GLYCOSPHINGOLIPID JRNL TITL 4 GLYCOSYLTRANSFERASES. JRNL REF EMBO J. V. 20 638 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11179209 JRNL DOI 10.1093/EMBOJ/20.4.638
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1804 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 306 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.40000 REMARK 3 B22 (A**2) : -15.40000 REMARK 3 B33 (A**2) : 30.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.27 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1G93 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012386.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9324 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18010 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NATIVE CRYSTAL STRUCTURE REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3 TO 1.6 M SODIUM ACETATE, 10 MM REMARK 280 MNCL2, 10 MM HG-UDP-GALACTGOSE, 500 MM NACL, 100 MM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.36250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.80400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.80400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.68125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.80400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.80400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.04375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.80400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.80400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.68125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.80400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.80400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.04375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.36250 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 LEU A 72 REMARK 465 VAL A 73 REMARK 465 PRO A 74 REMARK 465 ARG A 75 REMARK 465 GLY A 76 REMARK 465 SER A 77 REMARK 465 HIS A 78 REMARK 465 MET A 79 REMARK 465 GLU A 80 REMARK 465 SER A 81 REMARK 465 LYS A 359 REMARK 465 GLU A 360 REMARK 465 TYR A 361 REMARK 465 ASN A 362 REMARK 465 VAL A 363 REMARK 465 VAL A 364 REMARK 465 ARG A 365 REMARK 465 ASN A 366 REMARK 465 ASN A 367 REMARK 465 VAL A 368
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 268 O HOH A 1097 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 92 -9.39 -54.42 REMARK 500 HIS A 213 -34.16 -153.81 REMARK 500 ASP A 227 56.28 -69.61 REMARK 500 SER A 242 118.50 -166.20 REMARK 500 THR A 259 48.60 -76.06 REMARK 500 LYS A 264 -6.15 -48.25 REMARK 500 PRO A 271 166.19 -44.80 REMARK 500 HIS A 315 -129.72 49.56 REMARK 500 PRO A 335 -7.92 -58.02 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1020 DISTANCE = 5.13 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1091 DISTANCE = 5.59 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 800 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UPG A 500 O2A REMARK 620 2 TYR A 139 OH 47.2 REMARK 620 3 HOH A1029 O 89.2 85.3 REMARK 620 4 HOH A1079 O 141.0 95.5 74.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1000 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 227 OD2 REMARK 620 2 ASP A 227 OD1 54.5 REMARK 620 3 UPG A 500 O3A 114.3 107.3 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GAL A 502 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1000 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 500
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FG5 RELATED DB: PDB REMARK 900 1FG5 IS THE CRYSTALLOGRAPHIC STRUCTURE OF THE SELENIATED REMARK 900 NATIVE ALPHA1,3GALACTOSYLTRANSFERASE SOLVED AND REFINED AT REMARK 900 2.8 ANGSTROM RESOLUTION BY MAD TECHNIQUE REMARK 900 RELATED ID: 1G8O RELATED DB: PDB REMARK 900 N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE REMARK 900 COMPLEXED WITH UMP AT 2.3A
DBREF 1G93 A 80 368 UNP P14769 GGTA1_BOVIN 80 368
SEQADV 1G93 MET A 59 UNP P14769 CLONING ARTIFACT SEQADV 1G93 GLY A 60 UNP P14769 CLONING ARTIFACT SEQADV 1G93 SER A 61 UNP P14769 CLONING ARTIFACT SEQADV 1G93 SER A 62 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 63 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 64 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 65 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 66 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 67 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 68 UNP P14769 CLONING ARTIFACT SEQADV 1G93 SER A 69 UNP P14769 CLONING ARTIFACT SEQADV 1G93 SER A 70 UNP P14769 CLONING ARTIFACT SEQADV 1G93 GLY A 71 UNP P14769 CLONING ARTIFACT SEQADV 1G93 LEU A 72 UNP P14769 CLONING ARTIFACT SEQADV 1G93 VAL A 73 UNP P14769 CLONING ARTIFACT SEQADV 1G93 PRO A 74 UNP P14769 CLONING ARTIFACT SEQADV 1G93 ARG A 75 UNP P14769 CLONING ARTIFACT SEQADV 1G93 GLY A 76 UNP P14769 CLONING ARTIFACT SEQADV 1G93 SER A 77 UNP P14769 CLONING ARTIFACT SEQADV 1G93 HIS A 78 UNP P14769 CLONING ARTIFACT SEQADV 1G93 MET A 79 UNP P14769 CLONING ARTIFACT
SEQRES 1 A 310 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 310 LEU VAL PRO ARG GLY SER HIS MET GLU SER LYS LEU LYS SEQRES 3 A 310 LEU SER ASP TRP PHE ASN PRO PHE LYS ARG PRO GLU VAL SEQRES 4 A 310 VAL THR MET THR LYS TRP LYS ALA PRO VAL VAL TRP GLU SEQRES 5 A 310 GLY THR TYR ASN ARG ALA VAL LEU ASP ASN TYR TYR ALA SEQRES 6 A 310 LYS GLN LYS ILE THR VAL GLY LEU THR VAL PHE ALA VAL SEQRES 7 A 310 GLY ARG TYR ILE GLU HIS TYR LEU GLU GLU PHE LEU THR SEQRES 8 A 310 SER ALA ASN LYS HIS PHE MET VAL GLY HIS PRO VAL ILE SEQRES 9 A 310 PHE TYR ILE MET VAL ASP ASP VAL SER ARG MET PRO LEU SEQRES 10 A 310 ILE GLU LEU GLY PRO LEU ARG SER PHE LYS VAL PHE LYS SEQRES 11 A 310 ILE LYS PRO GLU LYS ARG TRP GLN ASP ILE SER MET MET SEQRES 12 A 310 ARG MET LYS THR ILE GLY GLU HIS ILE VAL ALA HIS ILE SEQRES 13 A 310 GLN HIS GLU VAL ASP PHE LEU PHE CYS MET ASP VAL ASP SEQRES 14 A 310 GLN VAL PHE GLN ASP LYS PHE GLY VAL GLU THR LEU GLY SEQRES 15 A 310 GLU SER VAL ALA GLN LEU GLN ALA TRP TRP TYR LYS ALA SEQRES 16 A 310 ASP PRO ASN ASP PHE THR TYR GLU ARG ARG LYS GLU SER SEQRES 17 A 310 ALA ALA TYR ILE PRO PHE GLY GLU GLY ASP PHE TYR TYR SEQRES 18 A 310 HIS ALA ALA ILE PHE GLY GLY THR PRO THR GLN VAL LEU SEQRES 19 A 310 ASN ILE THR GLN GLU CYS PHE LYS GLY ILE LEU LYS ASP SEQRES 20 A 310 LYS LYS ASN ASP ILE GLU ALA GLN TRP HIS ASP GLU SER SEQRES 21 A 310 HIS LEU ASN LYS TYR PHE LEU LEU ASN LYS PRO THR LYS SEQRES 22 A 310 ILE LEU SER PRO GLU TYR CYS TRP ASP TYR HIS ILE GLY SEQRES 23 A 310 LEU PRO ALA ASP ILE LYS LEU VAL LYS MET SER TRP GLN SEQRES 24 A 310 THR LYS GLU TYR ASN VAL VAL ARG ASN ASN VAL
HET GAL A 502 11 HET MN A1000 1 HET HG A 800 1 HET UPG A 500 36
HETNAM GAL BETA-D-GALACTOSE HETNAM MN MANGANESE (II) ION HETNAM HG MERCURY (II) ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE
HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER
FORMUL 2 GAL C6 H12 O6 FORMUL 3 MN MN 2+ FORMUL 4 HG HG 2+ FORMUL 5 UPG C15 H24 N2 O17 P2 FORMUL 6 HOH *97(H2 O)
HELIX 1 1 LYS A 84 PHE A 89 1 6 HELIX 2 2 ASN A 90 ARG A 94 5 5 HELIX 3 3 ASN A 114 GLN A 125 1 12 HELIX 4 4 ARG A 138 PHE A 155 1 18 HELIX 5 5 ASP A 169 MET A 173 5 5 HELIX 6 6 ARG A 194 HIS A 213 1 20 HELIX 7 7 HIS A 213 VAL A 218 1 6 HELIX 8 8 GLY A 235 LEU A 239 5 5 HELIX 9 9 ASP A 254 PHE A 258 5 5 HELIX 10 10 THR A 287 ASN A 308 1 22 HELIX 11 11 HIS A 315 ASN A 327 1 13 HELIX 12 12 PRO A 335 CYS A 338 5 4 HELIX 13 13 ASP A 340 GLY A 344 5 5
SHEET 1 A 8 VAL A 107 VAL A 108 0 SHEET 2 A 8 LYS A 331 LEU A 333 1 O ILE A 332 N VAL A 108 SHEET 3 A 8 SER A 242 GLN A 245 1 O SER A 242 N LYS A 331 SHEET 4 A 8 ILE A 283 GLY A 286 -1 O GLY A 285 N VAL A 243 SHEET 5 A 8 PHE A 220 MET A 224 -1 N LEU A 221 O GLY A 286 SHEET 6 A 8 VAL A 129 ALA A 135 1 O GLY A 130 N PHE A 222 SHEET 7 A 8 VAL A 161 VAL A 167 1 O ILE A 162 N LEU A 131 SHEET 8 A 8 ARG A 182 LYS A 188 1 O SER A 183 N PHE A 163 SHEET 1 B 2 GLN A 228 PHE A 230 0 SHEET 2 B 2 MET A 354 TRP A 356 -1 N SER A 355 O VAL A 229
LINK OE1 GLU A 317 C1 GAL A 502 1555 1555 1.46 LINK HG HG A 800 O2A UPG A 500 1555 1555 3.54 LINK HG HG A 800 OH TYR A 139 1555 1555 2.64 LINK HG HG A 800 O HOH A1029 1555 1555 3.16 LINK HG HG A 800 O HOH A1079 1555 1555 3.35 LINK MN MN A1000 OD2 ASP A 227 1555 1555 2.44 LINK MN MN A1000 OD1 ASP A 227 1555 1555 2.40 LINK MN MN A1000 O3A UPG A 500 1555 1555 2.54
SITE 1 AC1 8 GLN A 247 TRP A 250 THR A 259 TYR A 278 SITE 2 AC1 8 HIS A 280 TRP A 314 GLU A 317 UPG A 500 SITE 1 AC2 4 ASP A 225 ASP A 227 UPG A 500 HOH A1068 SITE 1 AC3 3 TYR A 139 TRP A 195 UPG A 500 SITE 1 AC4 22 PHE A 134 ALA A 135 VAL A 136 TYR A 139 SITE 2 AC4 22 TRP A 195 ILE A 198 SER A 199 ARG A 202 SITE 3 AC4 22 ASP A 225 VAL A 226 HIS A 280 ALA A 281 SITE 4 AC4 22 ALA A 282 TRP A 314 HIS A 315 ASP A 316 SITE 5 AC4 22 GLU A 317 GAL A 502 HG A 800 MN A1000 SITE 6 AC4 22 HOH A1075 HOH A1079
CRYST1 95.608 95.608 110.725 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010459 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010459 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009031 0.00000