10 20 30 40 50 60 70 80 1G8C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 16-NOV-00 1G8C
TITLE STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE INDOLICIDIN TITLE 2 BOUND TO SODIUM DODECYL SULFATE MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLICIDIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 4 SEQUENCE OCCURS NATURALLY IN BOS TAURUS (BOVINE) SOURCE 5 NEUTROPHILS. THE SEQUENCE IS NATURALLY AMIDATED AT C- SOURCE 6 TERMINUS.
KEYWDS POLY-L-PROLINE II HELIX, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 16
AUTHOR A.ROZEK,C.L.FRIEDRICH,R.E.HANCOCK
REVDAT 3 24-FEB-09 1G8C 1 VERSN REVDAT 2 17-JAN-01 1G8C 1 JRNL REVDAT 1 29-NOV-00 1G8C 0
JRNL AUTH A.ROZEK,C.L.FRIEDRICH,R.E.HANCOCK JRNL TITL STRUCTURE OF THE BOVINE ANTIMICROBIAL PEPTIDE JRNL TITL 2 INDOLICIDIN BOUND TO DODECYLPHOSPHOCHOLINE AND JRNL TITL 3 SODIUM DODECYL SULFATE MICELLES. JRNL REF BIOCHEMISTRY V. 39 15765 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11123901 JRNL DOI 10.1021/BI000714M
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 129 (NON REMARK 3 -REDUNDANT) NOE-DERIVED DISTANCE RESTRAINTS, 47 INTER-RESIDUE REMARK 3 AND 82 INTRA-RESIDUE
REMARK 4 REMARK 4 1G8C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012360.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : 240 MM SDS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM INDOLICIDIN, 240 MM REMARK 210 SODIUM DODECYL SULFATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX, UNITY REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.0.3 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 16 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 -72.42 -74.86 REMARK 500 1 TRP A 4 87.75 -177.39 REMARK 500 1 TRP A 8 40.88 -140.77 REMARK 500 1 TRP A 9 104.19 -48.54 REMARK 500 2 LEU A 2 174.55 -52.68 REMARK 500 2 PRO A 3 -170.17 -69.61 REMARK 500 2 TRP A 8 99.89 -179.11 REMARK 500 2 PRO A 10 75.23 -69.07 REMARK 500 2 TRP A 11 -71.49 -36.08 REMARK 500 3 TRP A 8 97.34 178.33 REMARK 500 3 TRP A 9 76.03 -119.11 REMARK 500 4 TRP A 4 94.08 179.95 REMARK 500 4 TRP A 8 99.03 -179.15 REMARK 500 4 TRP A 9 75.90 -110.32 REMARK 500 4 TRP A 11 -34.27 -36.78 REMARK 500 5 TRP A 4 -57.51 -167.77 REMARK 500 5 LYS A 5 35.05 -92.47 REMARK 500 5 TRP A 8 82.68 -168.14 REMARK 500 5 TRP A 11 -61.39 -27.47 REMARK 500 5 ARG A 12 124.99 -39.60 REMARK 500 6 TRP A 4 -67.62 -146.23 REMARK 500 6 LYS A 5 54.21 -94.86 REMARK 500 6 TRP A 8 100.59 179.49 REMARK 500 6 TRP A 9 76.32 -108.28 REMARK 500 6 ARG A 12 137.59 -38.38 REMARK 500 7 TRP A 4 -47.22 -178.09 REMARK 500 7 LYS A 5 65.21 -104.77 REMARK 500 7 TRP A 8 102.64 177.33 REMARK 500 7 TRP A 9 72.98 -113.50 REMARK 500 8 TRP A 4 63.51 -113.23 REMARK 500 8 TRP A 8 100.88 -179.35 REMARK 500 8 TRP A 9 73.46 -115.05 REMARK 500 8 ARG A 12 -179.56 -69.82 REMARK 500 9 TRP A 4 -47.48 -176.92 REMARK 500 9 LYS A 5 52.03 -91.96 REMARK 500 9 TRP A 8 98.17 -172.27 REMARK 500 9 PRO A 10 98.71 -67.63 REMARK 500 9 TRP A 11 -77.11 -38.84 REMARK 500 10 TRP A 4 -89.15 -102.18 REMARK 500 10 TRP A 9 100.67 -41.66 REMARK 500 10 TRP A 11 -60.30 -28.00 REMARK 500 11 TRP A 8 43.96 -167.85 REMARK 500 11 TRP A 9 106.04 -51.88 REMARK 500 11 TRP A 11 -60.78 -28.84 REMARK 500 11 ARG A 12 118.08 -35.20 REMARK 500 12 TRP A 4 66.11 -178.43 REMARK 500 12 LYS A 5 19.92 -144.13 REMARK 500 12 TRP A 8 76.38 -177.06 REMARK 500 12 TRP A 11 -59.99 -28.80 REMARK 500 12 ARG A 12 120.59 -32.30 REMARK 500 13 TRP A 4 -72.96 -126.75 REMARK 500 13 TRP A 8 101.77 178.71 REMARK 500 13 TRP A 11 -63.99 -29.36 REMARK 500 13 ARG A 12 107.99 -51.78 REMARK 500 14 LYS A 5 53.09 -96.10 REMARK 500 14 TRP A 8 99.71 -174.13 REMARK 500 14 TRP A 9 73.52 -116.95 REMARK 500 14 ARG A 12 -157.23 -125.49 REMARK 500 15 TRP A 4 -46.96 -178.79 REMARK 500 15 TRP A 9 105.13 -49.25 REMARK 500 15 PRO A 10 -158.83 -69.66 REMARK 500 16 TRP A 4 40.25 -109.59 REMARK 500 16 TRP A 8 102.26 176.54 REMARK 500 16 TRP A 11 -60.92 -28.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 12 0.23 SIDE_CHAIN REMARK 500 2 ARG A 12 0.15 SIDE_CHAIN REMARK 500 2 ARG A 13 0.25 SIDE_CHAIN REMARK 500 3 ARG A 12 0.31 SIDE_CHAIN REMARK 500 3 ARG A 13 0.15 SIDE_CHAIN REMARK 500 4 ARG A 12 0.32 SIDE_CHAIN REMARK 500 4 ARG A 13 0.20 SIDE_CHAIN REMARK 500 5 ARG A 13 0.30 SIDE_CHAIN REMARK 500 6 ARG A 12 0.21 SIDE_CHAIN REMARK 500 6 ARG A 13 0.32 SIDE_CHAIN REMARK 500 7 ARG A 12 0.26 SIDE_CHAIN REMARK 500 7 ARG A 13 0.10 SIDE_CHAIN REMARK 500 8 ARG A 12 0.25 SIDE_CHAIN REMARK 500 8 ARG A 13 0.30 SIDE_CHAIN REMARK 500 9 ARG A 12 0.23 SIDE_CHAIN REMARK 500 10 ARG A 12 0.31 SIDE_CHAIN REMARK 500 10 ARG A 13 0.32 SIDE_CHAIN REMARK 500 11 ARG A 12 0.30 SIDE_CHAIN REMARK 500 11 ARG A 13 0.25 SIDE_CHAIN REMARK 500 12 ARG A 12 0.24 SIDE_CHAIN REMARK 500 12 ARG A 13 0.14 SIDE_CHAIN REMARK 500 13 ARG A 13 0.24 SIDE_CHAIN REMARK 500 14 ARG A 12 0.31 SIDE_CHAIN REMARK 500 14 ARG A 13 0.26 SIDE_CHAIN REMARK 500 15 ARG A 12 0.26 SIDE_CHAIN REMARK 500 15 ARG A 13 0.24 SIDE_CHAIN REMARK 500 16 ARG A 12 0.27 SIDE_CHAIN REMARK 500 16 ARG A 13 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 14
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G89 RELATED DB: PDB REMARK 900 SAME PEPTIDE COMPLEXED WITH DODECYLPHOSPHOCHOLINE REMARK 900 RELATED ID: 4552 RELATED DB: BMRB REMARK 900 PROTON CHEMICAL SHIFTS
DBREF 1G8C A 1 13 UNP P33046 INDC_BOVIN 131 143
SEQRES 1 A 14 ILE LEU PRO TRP LYS TRP PRO TRP TRP PRO TRP ARG ARG SEQRES 2 A 14 NH2
HET NH2 A 14 3
HETNAM NH2 AMINO GROUP
FORMUL 1 NH2 H2 N
LINK C ARG A 13 N NH2 A 14 1555 1555 1.30
SITE 1 AC1 2 ARG A 12 ARG A 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000