10 20 30 40 50 60 70 80 1G6J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION, CELL CYCLE 06-NOV-00 1G6J
TITLE STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSE TITLE 2 MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15
KEYWDS REVERSE MICELLE, AOT, ENCAPSULATION, GENE REGULATION, CELL KEYWDS 2 CYCLE
EXPDTA SOLUTION NMR
NUMMDL 32
AUTHOR C.R.BABU,P.F.FLYNN,A.J.WAND
REVDAT 2 24-FEB-09 1G6J 1 VERSN REVDAT 1 28-MAR-01 1G6J 0
JRNL AUTH C.R.BABU,P.F.FLYNN,A.J.WAND JRNL TITL VALIDATION OF PROTEIN STRUCTURE FROM PREPARATIONS JRNL TITL 2 OF ENCAPSULATED PROTEINS DISSOLVED IN LOW JRNL TITL 3 VISCOSITY FLUIDS. JRNL REF J.AM.CHEM.SOC. V. 123 2691 2001 JRNL REFN ISSN 0002-7863 JRNL PMID 11456950 JRNL DOI 10.1021/JA005766D
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.WAND,M.R.EHRHARDT,P.F.FLYNN REMARK 1 TITL HIGH-RESOLUTION NMR OF ENCAPSULATED PROTEINS REMARK 1 TITL 2 DISSOLVED IN LOW-VISCOSITY FLUIDS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 15299 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.95.26.15299 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.R.EHRHARDT,P.F.FLYNN,A.J.WAND REMARK 1 TITL PREPARATION OF ENCAPSULATED PROTEINS DISSOLVED IN REMARK 1 TITL 2 LOW VISCOSITY FLUIDS REMARK 1 REF J.BIOMOL.NMR V. 14 75 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008354507250
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUNTERT, P., MUMENTHALER, C., WUTHRICH, K. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1805 REMARK 3 NOES AND 63 PHI RESTRAINTS
REMARK 4 REMARK 4 1G6J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-NOV-00. REMARK 100 THE RCSB ID CODE IS RCSB012295.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; 50 PSI REMARK 210 SAMPLE CONTENTS : 4 MG C13/N15 UBIQUITIN IN REMARK 210 13.5 UL OF BUFFER (50MM SODIUM REMARK 210 ACETATE, 250MM SODIUM REMARK 210 CHLORIDE, PH 5.0) AND 1 ML REMARK 210 D12-PENTANE; 8 MG 13/N15 REMARK 210 UBIQUITIN IN 27 UL OF BUFFER REMARK 210 (50MM SODIUM ACETATE, 250MM REMARK 210 SODIUM CHLORIDE, PH 5.0); 4 MG REMARK 210 N15 UBIQUITIN IN 13.5 UL OF REMARK 210 BUFFER (50MM SODIUM ACETATE, REMARK 210 250MM SODIUM CHLORIDE, PH 5.0) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 97, XEASY 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS USING REMARK 210 DYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TARGET FUNCTION VALUES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 25 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 33 -73.21 -77.13 REMARK 500 1 LEU A 73 -72.95 -80.05 REMARK 500 1 ARG A 74 -149.56 -86.20 REMARK 500 2 LYS A 33 -70.03 -79.10 REMARK 500 2 ASP A 52 104.76 -47.41 REMARK 500 2 ARG A 74 -153.50 -90.16 REMARK 500 3 LYS A 33 -73.05 -74.72 REMARK 500 3 ASP A 52 104.00 -47.01 REMARK 500 3 ARG A 74 -149.98 -90.19 REMARK 500 4 LYS A 33 -73.02 -74.84 REMARK 500 4 ASP A 52 104.22 -47.17 REMARK 500 4 ARG A 74 -150.69 -90.15 REMARK 500 5 THR A 9 44.41 -99.73 REMARK 500 5 LYS A 33 -74.81 -75.41 REMARK 500 5 ASP A 52 102.65 -46.96 REMARK 500 5 ARG A 74 -150.02 -90.11 REMARK 500 6 LYS A 33 -71.13 -79.73 REMARK 500 6 ASP A 52 105.63 -47.05 REMARK 500 6 ARG A 74 -156.27 -90.39 REMARK 500 7 LYS A 33 -75.12 -74.41 REMARK 500 7 ARG A 74 -149.94 -90.10 REMARK 500 8 ARG A 74 -150.18 -90.25 REMARK 500 9 LYS A 33 -74.94 -77.29 REMARK 500 9 LEU A 73 -73.56 -78.55 REMARK 500 10 THR A 9 39.87 -99.71 REMARK 500 10 LYS A 33 -77.50 -74.74 REMARK 500 10 ASP A 52 104.00 -46.77 REMARK 500 10 LEU A 73 -71.96 -79.45 REMARK 500 10 ARG A 74 -150.32 -90.34 REMARK 500 11 ASP A 52 104.81 -47.42 REMARK 500 11 ASN A 60 66.20 60.85 REMARK 500 11 LEU A 73 -70.84 -79.58 REMARK 500 11 ARG A 74 -150.03 -90.09 REMARK 500 12 THR A 9 43.82 -99.48 REMARK 500 12 LYS A 33 -72.46 -74.73 REMARK 500 12 ASP A 52 104.01 -47.35 REMARK 500 12 LEU A 73 -71.28 -77.30 REMARK 500 12 ARG A 74 -153.70 -90.35 REMARK 500 13 LYS A 33 -74.87 -74.64 REMARK 500 13 ARG A 74 -150.21 -90.07 REMARK 500 14 LYS A 33 -71.53 -74.58 REMARK 500 14 ASP A 52 106.35 -47.41 REMARK 500 14 ARG A 74 -149.93 -87.44 REMARK 500 15 LYS A 33 -78.23 -75.07 REMARK 500 15 ASP A 52 104.62 -47.39 REMARK 500 15 ASN A 60 66.19 62.57 REMARK 500 15 ARG A 74 -151.25 -90.31 REMARK 500 16 LYS A 33 -77.45 -78.76 REMARK 500 16 ARG A 74 -150.83 -90.23 REMARK 500 17 LYS A 33 -75.44 -75.11 REMARK 500 17 ALA A 46 19.87 55.02 REMARK 500 17 ASP A 52 103.39 -47.16 REMARK 500 17 LEU A 73 -73.44 -76.11 REMARK 500 17 ARG A 74 -150.07 -90.20 REMARK 500 18 LYS A 33 -72.94 -78.51 REMARK 500 18 ASP A 52 103.09 -47.03 REMARK 500 18 ARG A 74 -149.96 -90.08 REMARK 500 19 LYS A 33 -74.68 -80.39 REMARK 500 19 ASP A 52 104.99 -47.13 REMARK 500 19 ARG A 74 -150.17 -90.14 REMARK 500 20 LYS A 33 -78.01 -74.80 REMARK 500 20 ALA A 46 17.92 58.60 REMARK 500 20 ASP A 52 103.51 -47.27 REMARK 500 20 ARG A 74 -151.56 -90.19 REMARK 500 21 LYS A 33 -76.80 -80.84 REMARK 500 21 ASP A 52 108.37 -48.12 REMARK 500 21 ARG A 74 -150.13 -90.25 REMARK 500 22 LYS A 33 -77.00 -77.22 REMARK 500 22 ALA A 46 16.82 59.17 REMARK 500 22 ASP A 52 104.50 -47.19 REMARK 500 23 LYS A 33 -72.45 -76.12 REMARK 500 24 LYS A 33 -75.81 -76.16 REMARK 500 24 ASP A 52 105.62 -47.13 REMARK 500 25 LYS A 33 -78.49 -74.85 REMARK 500 25 ASP A 52 105.68 -47.06 REMARK 500 25 ASN A 60 61.39 61.92 REMARK 500 25 LEU A 73 -77.30 -79.91 REMARK 500 25 ARG A 74 -93.73 -81.04 REMARK 500 26 LYS A 33 -74.98 -75.01 REMARK 500 26 ASP A 52 102.93 -47.10 REMARK 500 26 LEU A 73 -70.92 -77.01 REMARK 500 26 ARG A 74 -150.24 -90.24 REMARK 500 27 LYS A 33 -75.08 -79.70 REMARK 500 27 ASP A 52 105.77 -48.10 REMARK 500 27 LEU A 73 -73.25 -80.19 REMARK 500 27 ARG A 74 -150.07 -90.21 REMARK 500 28 LYS A 33 -74.86 -75.59 REMARK 500 28 ASP A 52 104.77 -46.93 REMARK 500 28 ASN A 60 64.71 65.02 REMARK 500 28 ARG A 74 -158.46 -90.43 REMARK 500 29 LYS A 33 -77.05 -74.42 REMARK 500 29 ASP A 52 106.83 -47.17 REMARK 500 29 ASN A 60 64.85 62.24 REMARK 500 29 ARG A 74 -150.04 -90.24 REMARK 500 30 LYS A 33 -72.96 -81.96 REMARK 500 30 ASP A 52 104.23 -46.83 REMARK 500 30 LEU A 73 -70.50 -74.15 REMARK 500 30 ARG A 74 -150.02 -90.20 REMARK 500 31 LYS A 33 -76.51 -75.93 REMARK 500 31 ASP A 52 105.67 -47.22 REMARK 500 31 LEU A 73 -73.62 -79.94 REMARK 500 32 LYS A 33 -74.99 -80.55 REMARK 500 32 ARG A 74 -151.56 -90.11 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UBIQUITIN REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 STRUCTURE OF UBIQUITIN IN AQUEOUS BUFFER
DBREF 1G6J A 1 76 UNP P62988 UBIQ_HUMAN 1 76
SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY
HELIX 1 1 THR A 22 GLU A 34 1 13 HELIX 2 2 LEU A 56 ASN A 60 5 5
SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 LYS A 6 -1 O ILE A 3 N LEU A 15 SHEET 3 A 5 SER A 65 VAL A 70 1 O SER A 65 N PHE A 4 SHEET 4 A 5 ARG A 42 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000