10 20 30 40 50 60 70 80 1G26 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CYTOKINE 17-OCT-00 1G26
TITLE THE SOLUTION STRUCTURE OF A WELL-FOLDED PEPTIDE BASED ON TITLE 2 THE 31-RESIDUE AMINO-TERMINAL SUBDOMAIN OF HUMAN GRANULIN A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANULIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (RESIDUES 1-31); COMPND 5 SYNONYM: HGA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED SOURCE 4 USING STANDARD FMOC CHEMISTRY AND OXIDIZED BY AIR IN SOURCE 5 SOLUTION, CYS17 AND CYS27 WERE BLOCKED WITH S- SOURCE 6 ACETAMIDOMETHYL GROUPS (ACM)
KEYWDS GRANULIN/EPITHELIN PROTEIN REPEATS, BETA-HAIRPIN STACK, KEYWDS 2 CYTOKINE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR D.TOLKATCHEV,A.NG,W.VRANKEN,F.NI
REVDAT 2 24-FEB-09 1G26 1 VERSN REVDAT 1 01-NOV-00 1G26 0
JRNL AUTH D.TOLKATCHEV,A.NG,W.VRANKEN,F.NI JRNL TITL DESIGN AND SOLUTION STRUCTURE OF A WELL-FOLDED JRNL TITL 2 STACK OF TWO BETA-HAIRPINS BASED ON THE JRNL TITL 3 AMINO-TERMINAL FRAGMENT OF HUMAN GRANULIN A. JRNL REF BIOCHEMISTRY V. 39 2878 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10715107 JRNL DOI 10.1021/BI992130U
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 241 RESTRAINTS, 174 ARE UNAMBIGUOUS NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 47 AMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS, 8 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 10 DISTANCE RESTRAINTS FROM REMARK 3 HYDROGEN BONDS, 2 DISTANCE RESTRAINTS FROM DISULFIDE BONDS.
REMARK 4 REMARK 4 1G26 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012140.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 298 REMARK 210 PH : 5.0; 5.0 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM HGA 1-31 (D1V, K3H, REMARK 210 S9I, Q20P); 20 MM SODIUM REMARK 210 ACETATE-D3, 10% D2O, 90% H2O; REMARK 210 0.5 MM HGA 1-31 (D1V, K3H, REMARK 210 S9I, Q20P); 20 MM SODIUM REMARK 210 ACETATE-D3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 89.77 -51.59 REMARK 500 1 ASP A 5 -170.79 177.90 REMARK 500 2 VAL A 8 119.62 -167.19 REMARK 500 2 ASP A 12 -77.57 54.12 REMARK 500 3 HIS A 3 106.67 -46.05 REMARK 500 3 ASP A 5 -139.71 -156.87 REMARK 500 3 PRO A 11 41.06 -81.15 REMARK 500 3 ASP A 12 -57.97 66.34 REMARK 500 3 PHE A 29 59.84 -147.63 REMARK 500 3 THR A 30 69.92 -116.18 REMARK 500 4 ASP A 5 -166.45 -168.88 REMARK 500 4 SER A 21 31.66 -99.14 REMARK 500 5 HIS A 3 82.32 -59.07 REMARK 500 5 GLU A 7 -33.16 -136.61 REMARK 500 5 PRO A 11 38.01 -80.33 REMARK 500 5 ASP A 12 -56.33 66.32 REMARK 500 5 PHE A 29 -45.42 -147.66 REMARK 500 6 ASP A 5 -80.08 -169.54 REMARK 500 6 MET A 6 -53.79 -146.15 REMARK 500 6 PRO A 11 43.14 -78.59 REMARK 500 6 ASP A 12 -58.95 65.05 REMARK 500 7 HIS A 3 93.50 56.07 REMARK 500 7 ASP A 5 -153.61 -163.40 REMARK 500 7 PRO A 11 38.84 -80.25 REMARK 500 7 ASP A 12 138.19 66.69 REMARK 500 7 PHE A 29 20.56 -153.60 REMARK 500 8 ASP A 5 -147.27 -145.46 REMARK 500 8 ASP A 12 -19.16 -48.86 REMARK 500 8 PRO A 20 41.58 -80.01 REMARK 500 8 SER A 21 30.05 -168.33 REMARK 500 8 THR A 30 37.65 -143.26 REMARK 500 9 ASP A 5 -134.10 -160.18 REMARK 500 9 GLU A 7 -60.92 -121.83 REMARK 500 9 PRO A 11 42.77 -78.98 REMARK 500 9 ASP A 12 137.91 63.04 REMARK 500 9 PHE A 29 53.74 -158.53 REMARK 500 10 VAL A 2 56.07 -104.40 REMARK 500 10 ASP A 5 -60.61 -146.54 REMARK 500 10 MET A 6 -36.03 -176.51 REMARK 500 10 PRO A 11 32.98 -82.09 REMARK 500 10 ASP A 12 -56.31 66.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.28 SIDE_CHAIN REMARK 500 2 ARG A 18 0.20 SIDE_CHAIN REMARK 500 3 ARG A 18 0.18 SIDE_CHAIN REMARK 500 4 ARG A 18 0.32 SIDE_CHAIN REMARK 500 5 ARG A 18 0.28 SIDE_CHAIN REMARK 500 6 ARG A 18 0.26 SIDE_CHAIN REMARK 500 7 ARG A 18 0.18 SIDE_CHAIN REMARK 500 8 ARG A 18 0.23 SIDE_CHAIN REMARK 500 9 ARG A 18 0.26 SIDE_CHAIN REMARK 500 10 ARG A 18 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGM RELATED DB: PDB REMARK 900 1QGM BELONGS TO A FAMILY OF GRANULIN-LIKE REPEATS REMARK 900 RELATED ID: 1FWO RELATED DB: PDB REMARK 900 1FWO BELONGS TO A FAMILY OF GRANULIN-LIKE REPEATS
DBREF 1G26 A 1 31 UNP P28799 GRN_HUMAN 281 311
SEQADV 1G26 VAL A 1 UNP P28799 ASP 281 ENGINEERED SEQADV 1G26 HIS A 3 UNP P28799 LYS 283 ENGINEERED SEQADV 1G26 ILE A 9 UNP P28799 SER 289 ENGINEERED SEQADV 1G26 PRO A 20 UNP P28799 GLN 300 ENGINEERED
SEQRES 1 A 31 VAL VAL HIS CYS ASP MET GLU VAL ILE CYS PRO ASP GLY SEQRES 2 A 31 TYR THR CYS CYS ARG LEU PRO SER GLY ALA TRP GLY CYS SEQRES 3 A 31 CYS PRO PHE THR GLN
SHEET 1 A 2 VAL A 2 ASP A 5 0 SHEET 2 A 2 VAL A 8 CYS A 10 -1 O VAL A 8 N ASP A 5 SHEET 1 B 2 TYR A 14 ARG A 18 0 SHEET 2 B 2 TRP A 24 PRO A 28 -1 N GLY A 25 O CYS A 17
SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.02 SSBOND 2 CYS A 10 CYS A 26 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000