1FYP - Header Asymmetric Unit

HEADER RNA 02-OCT-00 1FYP

TITLE EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX

COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGMENT OF 18S RIBOSOMAL RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 18S RNA - NUCLEOTIDES 1404-1412, 1488-1497 (E. COMPND 5 COLI NUMBERING); COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: EUKARYOTIC DECODING REGION A-SITE RNA

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OF 18S RNA OCCURS IN SOURCE 4 TETRAHYMENA THERMOPHILA

KEYWDS RNA-PAROMOMYCIN COMPLEX, AMINOGLYCOSIDE, STEM-INTERNAL LOOP- KEYWDS 2 STEM-TETRALOOP, RNA-DRUG, G-A BASE PAIR

EXPDTA SOLUTION NMR

NUMMDL 29

AUTHOR S.R.LYNCH,J.D.PUGLISI

REVDAT 3 24-FEB-09 1FYP 1 VERSN REVDAT 2 09-JAN-02 1FYP 1 COMPND SOURCE REMARK REVDAT 1 14-MAR-01 1FYP 0

JRNL AUTH S.R.LYNCH,J.D.PUGLISI JRNL TITL STRUCTURAL ORIGINS OF AMINOGLYCOSIDE SPECIFICITY JRNL TITL 2 FOR PROKARYOTIC RIBOSOMES. JRNL REF J.MOL.BIOL. V. 306 1037 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11237617 JRNL DOI 10.1006/JMBI.2000.4420

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.83 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 605 NOES, 122 DIHEDRAL CONSTRAINTS, REMARK 3 AND 36 HYDROGEN BONDS

REMARK 4 REMARK 4 1FYP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB012022.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 3 MM RNA, 3 MM PAROMOMYCIN, REMARK 210 10 MM NAPHOSPHATE, PH 6.3, REMARK 210 13C/15N RNA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY, REMARK 210 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1, FELIX 98, X-PLOR REMARK 210 3.83 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 11 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PAR A 28

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FYO RELATED DB: PDB REMARK 900 EUKARYOTIC DECODING REGION A-SITE RNA, FREE IN SOLUTION REMARK 900 RELATED ID: 1PBR RELATED DB: PDB REMARK 900 PROKARYOTIC DECODING REGION A-SITE RNA, BOUND TO PAROMOMYCIN REMARK 900 RELATED ID: 1A3M RELATED DB: PDB REMARK 900 PROKARYOTIC DECODING REGION A-SITE RNA, FREE IN SOLUTION

DBREF 1FYP A 1 27 PDB 1FYP 1FYP 1 27

SEQRES 1 A 27 G G C G U C G C A C C U U SEQRES 2 A 27 C G G G U G A A G U C G C SEQRES 3 A 27 C

HET PAR A 28 87

HETNAM PAR PAROMOMYCIN

HETSYN PAR PAROMOMYCIN I, AMMINOSIDIN, CATENULIN, CRESTOMYCIN, HETSYN 2 PAR MONOMYCIN A, NEOMYCIN E

FORMUL 2 PAR C23 H45 N5 O14

SITE 1 AC1 13 G A 2 C A 3 G A 4 U A 5 SITE 2 AC1 13 C A 6 G A 7 G A 17 U A 18 SITE 3 AC1 13 G A 19 A A 20 A A 21 G A 22 SITE 4 AC1 13 U A 23

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000