10 20 30 40 50 60 70 80 1FXJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 26-SEP-00 1FXJ
TITLE CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE 1-PHOSPHATE TITLE 2 URIDYLTRANSFERASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRUNCATED FORM AFTER ARG331; COMPND 5 SYNONYM: N-ACETYLGLUCOSAMINE 1-PHOSPHATE URIDYLTRANSFERASE; COMPND 6 EC: 2.7.7.23; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-22B
KEYWDS ACETYLTRANSFERASE, BIFUNCTIONAL, CRYSTALLOGRAPHY, DRUG KEYWDS 2 DESIGN, PYROPHOSPHORYLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR K.BROWN,F.POMPEO,S.DIXON,D.MENGIN-LECREULX,C.CAMBILLAU, AUTHOR 2 Y.BOURNE
REVDAT 2 24-FEB-09 1FXJ 1 VERSN REVDAT 1 18-OCT-00 1FXJ 0
JRNL AUTH K.BROWN,F.POMPEO,S.DIXON,D.MENGIN-LECREULX, JRNL AUTH 2 C.CAMBILLAU,Y.BOURNE JRNL TITL CRYSTAL STRUCTURE OF THE BIFUNCTIONAL JRNL TITL 2 N-ACETYLGLUCOSAMINE 1-PHOSPHATE URIDYLTRANSFERASE JRNL TITL 3 FROM ESCHERICHIA COLI: A PARADIGM FOR THE RELATED JRNL TITL 4 PYROPHOSPHORYLASE SUPERFAMILY. JRNL REF EMBO J. V. 18 4096 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10428949 JRNL DOI 10.1093/EMBOJ/18.15.4096
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 44 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.67 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1FXJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-00. REMARK 100 THE RCSB ID CODE IS RCSB011986.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3-1.5 M AMMONIUM SULFATE, 0.1 M REMARK 280 MES, 4% (V/V) ACETONE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.18817 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.71000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.34000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.18817 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.71000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.34000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.18817 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.71000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.34000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.18817 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.71000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.34000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.18817 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.71000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.34000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.18817 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.71000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.37634 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 165.42000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 82.37634 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 165.42000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 82.37634 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 165.42000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 82.37634 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 165.42000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 82.37634 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 165.42000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 82.37634 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 165.42000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 142.68000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 71.34000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 123.56450 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 142.68000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 71.34000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 123.56450 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 330 REMARK 465 ARG A 331 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 327 REMARK 465 PRO B 328 REMARK 465 PHE B 329 REMARK 465 ALA B 330 REMARK 465 ARG B 331
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 359 O HOH B 431 2.11 REMARK 500 O HOH B 362 O HOH B 480 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 370 O HOH B 478 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 307 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 135 53.75 147.11 REMARK 500 PRO A 136 -1.09 -58.80 REMARK 500 ARG A 163 21.16 -65.59 REMARK 500 GLN A 164 27.34 -140.99 REMARK 500 ASN A 190 71.29 -63.16 REMARK 500 ASP A 256 95.15 -169.12 REMARK 500 ALA B 12 34.88 -140.47 REMARK 500 ASP B 135 82.13 -164.27 REMARK 500 ARG B 163 8.59 -56.03 REMARK 500 ASN B 190 66.91 -69.54 REMARK 500 ILE B 201 -18.22 -47.81 REMARK 500 ASP B 256 90.10 -172.44 REMARK 500 ARG B 289 14.56 56.16 REMARK 500 ASN B 300 58.16 36.85 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 486 DISTANCE = 5.34 ANGSTROMS REMARK 525 HOH B 508 DISTANCE = 6.33 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 332 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 332 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 333
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FWY RELATED DB: PDB REMARK 900 1FWY CONTAINS THE SAME PROTEIN COMPLEXED WITH UDP-GLCNAC
DBREF 1FXJ A 1 331 UNP P0ACC7 GLMU_ECOLI 1 331 DBREF 1FXJ B 1 331 UNP P0ACC7 GLMU_ECOLI 1 331
SEQRES 1 A 331 MET LEU ASN ASN ALA MET SER VAL VAL ILE LEU ALA ALA SEQRES 2 A 331 GLY LYS GLY THR ARG MET TYR SER ASP LEU PRO LYS VAL SEQRES 3 A 331 LEU HIS THR LEU ALA GLY LYS ALA MET VAL GLN HIS VAL SEQRES 4 A 331 ILE ASP ALA ALA ASN GLU LEU GLY ALA ALA HIS VAL HIS SEQRES 5 A 331 LEU VAL TYR GLY HIS GLY GLY ASP LEU LEU LYS GLN ALA SEQRES 6 A 331 LEU LYS ASP ASP ASN LEU ASN TRP VAL LEU GLN ALA GLU SEQRES 7 A 331 GLN LEU GLY THR GLY HIS ALA MET GLN GLN ALA ALA PRO SEQRES 8 A 331 PHE PHE ALA ASP ASP GLU ASP ILE LEU MET LEU TYR GLY SEQRES 9 A 331 ASP VAL PRO LEU ILE SER VAL GLU THR LEU GLN ARG LEU SEQRES 10 A 331 ARG ASP ALA LYS PRO GLN GLY GLY ILE GLY LEU LEU THR SEQRES 11 A 331 VAL LYS LEU ASP ASP PRO THR GLY TYR GLY ARG ILE THR SEQRES 12 A 331 ARG GLU ASN GLY LYS VAL THR GLY ILE VAL GLU HIS LYS SEQRES 13 A 331 ASP ALA THR ASP GLU GLN ARG GLN ILE GLN GLU ILE ASN SEQRES 14 A 331 THR GLY ILE LEU ILE ALA ASN GLY ALA ASP MET LYS ARG SEQRES 15 A 331 TRP LEU ALA LYS LEU THR ASN ASN ASN ALA GLN GLY GLU SEQRES 16 A 331 TYR TYR ILE THR ASP ILE ILE ALA LEU ALA TYR GLN GLU SEQRES 17 A 331 GLY ARG GLU ILE VAL ALA VAL HIS PRO GLN ARG LEU SER SEQRES 18 A 331 GLU VAL GLU GLY VAL ASN ASN ARG LEU GLN LEU SER ARG SEQRES 19 A 331 LEU GLU ARG VAL TYR GLN SER GLU GLN ALA GLU LYS LEU SEQRES 20 A 331 LEU LEU ALA GLY VAL MET LEU ARG ASP PRO ALA ARG PHE SEQRES 21 A 331 ASP LEU ARG GLY THR LEU THR HIS GLY ARG ASP VAL GLU SEQRES 22 A 331 ILE ASP THR ASN VAL ILE ILE GLU GLY ASN VAL THR LEU SEQRES 23 A 331 GLY HIS ARG VAL LYS ILE GLY THR GLY CYS VAL ILE LYS SEQRES 24 A 331 ASN SER VAL ILE GLY ASP ASP CYS GLU ILE SER PRO TYR SEQRES 25 A 331 THR VAL VAL GLU ASP ALA ASN LEU ALA ALA ALA CYS THR SEQRES 26 A 331 ILE GLY PRO PHE ALA ARG SEQRES 1 B 331 MET LEU ASN ASN ALA MET SER VAL VAL ILE LEU ALA ALA SEQRES 2 B 331 GLY LYS GLY THR ARG MET TYR SER ASP LEU PRO LYS VAL SEQRES 3 B 331 LEU HIS THR LEU ALA GLY LYS ALA MET VAL GLN HIS VAL SEQRES 4 B 331 ILE ASP ALA ALA ASN GLU LEU GLY ALA ALA HIS VAL HIS SEQRES 5 B 331 LEU VAL TYR GLY HIS GLY GLY ASP LEU LEU LYS GLN ALA SEQRES 6 B 331 LEU LYS ASP ASP ASN LEU ASN TRP VAL LEU GLN ALA GLU SEQRES 7 B 331 GLN LEU GLY THR GLY HIS ALA MET GLN GLN ALA ALA PRO SEQRES 8 B 331 PHE PHE ALA ASP ASP GLU ASP ILE LEU MET LEU TYR GLY SEQRES 9 B 331 ASP VAL PRO LEU ILE SER VAL GLU THR LEU GLN ARG LEU SEQRES 10 B 331 ARG ASP ALA LYS PRO GLN GLY GLY ILE GLY LEU LEU THR SEQRES 11 B 331 VAL LYS LEU ASP ASP PRO THR GLY TYR GLY ARG ILE THR SEQRES 12 B 331 ARG GLU ASN GLY LYS VAL THR GLY ILE VAL GLU HIS LYS SEQRES 13 B 331 ASP ALA THR ASP GLU GLN ARG GLN ILE GLN GLU ILE ASN SEQRES 14 B 331 THR GLY ILE LEU ILE ALA ASN GLY ALA ASP MET LYS ARG SEQRES 15 B 331 TRP LEU ALA LYS LEU THR ASN ASN ASN ALA GLN GLY GLU SEQRES 16 B 331 TYR TYR ILE THR ASP ILE ILE ALA LEU ALA TYR GLN GLU SEQRES 17 B 331 GLY ARG GLU ILE VAL ALA VAL HIS PRO GLN ARG LEU SER SEQRES 18 B 331 GLU VAL GLU GLY VAL ASN ASN ARG LEU GLN LEU SER ARG SEQRES 19 B 331 LEU GLU ARG VAL TYR GLN SER GLU GLN ALA GLU LYS LEU SEQRES 20 B 331 LEU LEU ALA GLY VAL MET LEU ARG ASP PRO ALA ARG PHE SEQRES 21 B 331 ASP LEU ARG GLY THR LEU THR HIS GLY ARG ASP VAL GLU SEQRES 22 B 331 ILE ASP THR ASN VAL ILE ILE GLU GLY ASN VAL THR LEU SEQRES 23 B 331 GLY HIS ARG VAL LYS ILE GLY THR GLY CYS VAL ILE LYS SEQRES 24 B 331 ASN SER VAL ILE GLY ASP ASP CYS GLU ILE SER PRO TYR SEQRES 25 B 331 THR VAL VAL GLU ASP ALA ASN LEU ALA ALA ALA CYS THR SEQRES 26 B 331 ILE GLY PRO PHE ALA ARG
HET SO4 B 332 5 HET SO4 A 332 5 HET MES A 333 12
HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 MES C6 H13 N O4 S FORMUL 6 HOH *360(H2 O)
HELIX 1 1 GLY A 16 TYR A 20 5 5 HELIX 2 2 PRO A 24 LEU A 27 5 4 HELIX 3 3 MET A 35 GLY A 47 1 13 HELIX 4 4 GLY A 58 LEU A 66 1 9 HELIX 5 5 LEU A 80 ALA A 90 1 11 HELIX 6 6 PRO A 91 PHE A 93 5 3 HELIX 7 7 SER A 110 ALA A 120 1 11 HELIX 8 8 GLU A 154 ALA A 158 5 5 HELIX 9 9 GLY A 177 LYS A 186 1 10 HELIX 10 10 TYR A 197 THR A 199 5 3 HELIX 11 11 ASP A 200 GLU A 208 1 9 HELIX 12 12 ARG A 219 GLU A 224 5 6 HELIX 13 13 ASN A 228 ALA A 250 1 23 HELIX 14 14 ASP A 256 ALA A 258 5 3 HELIX 15 15 GLY B 16 TYR B 20 5 5 HELIX 16 16 PRO B 24 LEU B 27 5 4 HELIX 17 17 MET B 35 GLY B 47 1 13 HELIX 18 18 GLY B 58 LEU B 66 1 9 HELIX 19 19 LEU B 80 ALA B 90 1 11 HELIX 20 20 PRO B 91 PHE B 93 5 3 HELIX 21 21 SER B 110 ALA B 120 1 11 HELIX 22 22 GLU B 154 ALA B 158 5 5 HELIX 23 23 GLU B 161 ILE B 165 5 5 HELIX 24 24 GLY B 177 LYS B 186 1 10 HELIX 25 25 TYR B 197 THR B 199 5 3 HELIX 26 26 ASP B 200 GLU B 208 1 9 HELIX 27 27 ARG B 219 GLU B 224 5 6 HELIX 28 28 ASN B 228 ALA B 250 1 23
SHEET 1 A 7 LEU A 71 LEU A 75 0 SHEET 2 A 7 VAL A 51 TYR A 55 1 O VAL A 51 N ASN A 70 SHEET 3 A 7 MET A 6 LEU A 11 1 O VAL A 8 N HIS A 50 SHEET 4 A 7 ASP A 96 TYR A 103 1 O ASP A 96 N SER A 7 SHEET 5 A 7 GLU A 167 ASN A 176 -1 O LEU A 173 N MET A 101 SHEET 6 A 7 ILE A 126 LYS A 132 -1 N GLY A 125 O ILE A 172 SHEET 7 A 7 ILE A 212 VAL A 213 1 O VAL A 213 N LEU A 128 SHEET 1 B 2 ARG A 141 GLU A 145 0 SHEET 2 B 2 LYS A 148 VAL A 153 -1 O LYS A 148 N GLU A 145 SHEET 1 C 5 VAL A 252 ARG A 255 0 SHEET 2 C 5 VAL A 272 ASP A 275 1 O VAL A 272 N MET A 253 SHEET 3 C 5 VAL A 290 GLY A 293 1 O VAL A 290 N GLU A 273 SHEET 4 C 5 CYS A 307 SER A 310 1 O CYS A 307 N LYS A 291 SHEET 5 C 5 CYS A 324 GLY A 327 1 O CYS A 324 N GLU A 308 SHEET 1 D 4 PHE A 260 ARG A 263 0 SHEET 2 D 4 VAL A 278 GLU A 281 1 O VAL A 278 N ASP A 261 SHEET 3 D 4 CYS A 296 LYS A 299 1 O CYS A 296 N ILE A 279 SHEET 4 D 4 THR A 313 GLU A 316 1 O THR A 313 N VAL A 297 SHEET 1 E 4 LEU A 266 GLY A 269 0 SHEET 2 E 4 VAL A 284 GLY A 287 1 N VAL A 284 O THR A 265 SHEET 3 E 4 SER A 301 GLY A 304 1 N SER A 301 O ASN A 283 SHEET 4 E 4 ALA A 318 ALA A 321 1 N ALA A 318 O ASN A 300 SHEET 1 F 7 LEU B 71 LEU B 75 0 SHEET 2 F 7 VAL B 51 TYR B 55 1 O VAL B 51 N ASN B 72 SHEET 3 F 7 MET B 6 LEU B 11 1 O VAL B 8 N HIS B 52 SHEET 4 F 7 ASP B 98 TYR B 103 1 O ASP B 98 N SER B 7 SHEET 5 F 7 GLU B 167 ASN B 176 -1 O LEU B 173 N MET B 101 SHEET 6 F 7 ILE B 126 LYS B 132 -1 N GLY B 127 O ILE B 174 SHEET 7 F 7 ILE B 212 VAL B 215 1 O VAL B 213 N LEU B 128 SHEET 1 G 2 ARG B 141 GLU B 145 0 SHEET 2 G 2 LYS B 148 VAL B 153 -1 O LYS B 148 N GLU B 145 SHEET 1 H 4 VAL B 252 ARG B 255 0 SHEET 2 H 4 VAL B 272 ASP B 275 1 O VAL B 272 N MET B 253 SHEET 3 H 4 VAL B 290 GLY B 293 1 O VAL B 290 N GLU B 273 SHEET 4 H 4 CYS B 307 SER B 310 1 O CYS B 307 N LYS B 291 SHEET 1 I 4 PHE B 260 ARG B 263 0 SHEET 2 I 4 VAL B 278 GLU B 281 1 O VAL B 278 N ASP B 261 SHEET 3 I 4 CYS B 296 LYS B 299 1 O CYS B 296 N ILE B 279 SHEET 4 I 4 THR B 313 GLU B 316 1 O THR B 313 N VAL B 297 SHEET 1 J 4 LEU B 266 GLY B 269 0 SHEET 2 J 4 VAL B 284 GLY B 287 1 N VAL B 284 O THR B 265 SHEET 3 J 4 SER B 301 GLY B 304 1 N SER B 301 O ASN B 283 SHEET 4 J 4 ALA B 318 ALA B 321 1 N ALA B 318 O ASN B 300
SSBOND 1 CYS A 307 CYS A 324 1555 1555 2.09 SSBOND 2 CYS B 307 CYS B 324 1555 1555 2.08
SITE 1 AC1 3 ARG B 18 ASN B 227 GLN B 231 SITE 1 AC2 5 ARG A 18 ASN A 227 GLN A 231 HOH A 363 SITE 2 AC2 5 HOH A 407 SITE 1 AC3 8 LEU A 11 ALA A 13 GLY A 14 TYR A 103 SITE 2 AC3 8 ASP A 105 GLY A 225 ASN A 227 HOH A 413
CRYST1 142.680 142.680 248.130 90.00 90.00 120.00 H 3 2 36
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007009 0.004046 0.000000 0.00000
SCALE2 0.000000 0.008093 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004030 0.00000