10 20 30 40 50 60 70 80 1FTT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER DNA BINDING PROTEIN 03-OCT-95 1FTT
TITLE THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN (RATTUS TITLE 2 NORVEGICUS)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROID TRANSCRIPTION FACTOR 1 HOMEODOMAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TTF-1 HD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PH = 4.0 - 4.1, T = 287 - 289 K, NAN3 (W/V) COMPND 7 = 0.2 - 0.5%
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RAT TTF-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7.7; SOURCE 10 EXPRESSION_SYSTEM_GENE: RAT TTF-1
KEYWDS DNA BINDING PROTEIN, HOMEODOMAIN, TRANSCRIPTION FACTOR
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.FOGOLARI,G.ESPOSITO,G.DAMANTE,S.FORMISANO,R.DI LAURO, AUTHOR 2 P.VIGLINO
REVDAT 2 24-FEB-09 1FTT 1 VERSN REVDAT 1 29-JAN-96 1FTT 0
JRNL AUTH G.ESPOSITO,F.FOGOLARI,G.DAMANTE,S.FORMISANO,G.TELL, JRNL AUTH 2 A.LEONARDI,R.DI LAURO,P.VIGLINO JRNL TITL ANALYSIS OF THE SOLUTION STRUCTURE OF THE JRNL TITL 2 HOMEODOMAIN OF RAT THYROID TRANSCRIPTION FACTOR 1 JRNL TITL 3 BY 1H-NMR SPECTROSCOPY AND RESTRAINED MOLECULAR JRNL TITL 4 MECHANICS. JRNL REF EUR.J.BIOCHEM. V. 241 101 1996 JRNL REFN ISSN 0014-2956 JRNL PMID 8898894 JRNL DOI 10.1111/J.1432-1033.1996.0101T.X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.VIGLINO,F.FOGOLARI,S.FORMISANO,N.BORTOLOTTI, REMARK 1 AUTH 2 G.DAMANTE,R.DI LAURO,G.ESPOSITO REMARK 1 TITL STRUCTURAL STUDY OF RAT THYROID TRANSCRIPTION REMARK 1 TITL 2 FACTOR 1 HOMEODOMAIN (TTF-1 HD) BY NUCLEAR REMARK 1 TITL 3 MAGNETIC RESONANCE REMARK 1 REF FEBS LETT. V. 336 397 1993 REMARK 1 REFN ISSN 0014-5793
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : BIOSYM TECHNOLOGIES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1FTT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 6 -71.25 -67.49 REMARK 500 1 PHE A 8 175.65 60.73 REMARK 500 1 HIS A 39 98.26 109.72 REMARK 500 1 ALA A 60 67.48 67.53 REMARK 500 1 LYS A 61 149.51 57.51 REMARK 500 1 ALA A 64 -114.19 -91.40 REMARK 500 2 ARG A 2 90.15 -162.50 REMARK 500 2 ARG A 4 -71.97 -138.25 REMARK 500 2 VAL A 6 -72.43 -66.77 REMARK 500 2 LEU A 7 50.87 -159.71 REMARK 500 2 GLN A 22 -72.13 -87.44 REMARK 500 2 HIS A 39 104.08 123.76 REMARK 500 2 GLN A 59 93.10 72.21 REMARK 500 2 LYS A 61 -82.16 60.34 REMARK 500 2 LYS A 63 -63.68 75.25 REMARK 500 2 ALA A 65 -47.86 74.79 REMARK 500 3 ARG A 4 -62.32 160.69 REMARK 500 3 HIS A 39 95.89 100.08 REMARK 500 3 LYS A 63 -52.72 75.01 REMARK 500 3 ALA A 64 -78.38 -149.47 REMARK 500 3 ALA A 65 -80.91 61.95 REMARK 500 3 GLN A 66 40.36 71.24 REMARK 500 4 ARG A 2 -149.17 58.49 REMARK 500 4 LYS A 3 99.39 71.16 REMARK 500 4 HIS A 39 103.39 107.50 REMARK 500 4 LEU A 40 -174.44 -179.19 REMARK 500 4 ALA A 60 -171.60 61.63 REMARK 500 4 LYS A 61 -56.21 73.99 REMARK 500 4 ASP A 62 76.09 -68.51 REMARK 500 4 LYS A 63 -22.14 143.41 REMARK 500 4 GLN A 66 -37.89 -167.60 REMARK 500 5 PHE A 8 -179.74 62.81 REMARK 500 5 GLN A 22 -73.18 -107.12 REMARK 500 5 HIS A 39 79.43 119.64 REMARK 500 5 ALA A 60 -104.68 49.83 REMARK 500 5 LYS A 61 -103.73 38.12 REMARK 500 5 ALA A 64 80.56 -172.79 REMARK 500 5 ALA A 65 -47.84 -141.10 REMARK 500 5 GLN A 66 41.78 -76.44 REMARK 500 6 LYS A 3 -73.69 -163.22 REMARK 500 6 ARG A 4 -54.12 -153.28 REMARK 500 6 ARG A 5 161.62 69.57 REMARK 500 6 VAL A 6 -84.48 -80.19 REMARK 500 6 LEU A 7 37.36 -99.72 REMARK 500 6 GLN A 22 -54.76 -138.17 REMARK 500 6 HIS A 39 74.46 107.00 REMARK 500 6 GLN A 59 -63.02 70.04 REMARK 500 6 ALA A 60 -93.50 58.46 REMARK 500 6 LYS A 61 104.88 -168.86 REMARK 500 6 LYS A 63 59.19 -100.72 REMARK 500 6 ALA A 64 -139.32 -100.78 REMARK 500 7 ARG A 2 58.49 39.24 REMARK 500 7 LYS A 3 60.54 63.01 REMARK 500 7 ARG A 4 -55.23 74.88 REMARK 500 7 GLN A 23 111.24 -29.81 REMARK 500 7 LYS A 24 37.65 -88.33 REMARK 500 7 TYR A 25 89.23 53.40 REMARK 500 7 HIS A 39 97.18 119.25 REMARK 500 7 GLN A 59 106.06 -164.15 REMARK 500 7 ALA A 60 -87.27 -78.49 REMARK 500 7 LYS A 61 56.70 -156.15 REMARK 500 8 ARG A 2 164.58 65.51 REMARK 500 8 ARG A 4 -51.27 77.04 REMARK 500 8 VAL A 6 -80.87 -65.89 REMARK 500 8 LEU A 7 78.12 -168.06 REMARK 500 8 HIS A 39 -49.71 167.36 REMARK 500 8 GLN A 59 -47.54 -158.44 REMARK 500 8 ALA A 60 87.14 119.16 REMARK 500 8 LYS A 61 -108.49 56.23 REMARK 500 8 ALA A 65 -124.45 52.98 REMARK 500 8 GLN A 66 -72.78 -133.62 REMARK 500 9 ARG A 2 -149.92 69.57 REMARK 500 9 VAL A 6 -79.82 -81.76 REMARK 500 9 GLN A 22 -70.42 -76.00 REMARK 500 9 HIS A 39 113.65 97.21 REMARK 500 9 LEU A 40 -174.25 163.52 REMARK 500 9 GLN A 59 -24.30 67.50 REMARK 500 9 ALA A 60 -72.23 75.72 REMARK 500 9 LYS A 61 -107.27 46.17 REMARK 500 10 LYS A 3 89.14 70.40 REMARK 500 10 ARG A 4 -74.72 -68.25 REMARK 500 10 VAL A 6 -74.56 -68.61 REMARK 500 10 LYS A 24 -63.82 -98.23 REMARK 500 10 HIS A 39 80.12 97.44 REMARK 500 10 GLN A 59 -46.40 -154.15 REMARK 500 10 LYS A 61 -112.68 -149.56 REMARK 500 11 ARG A 1 -153.62 -137.69 REMARK 500 11 LYS A 3 -75.51 66.35 REMARK 500 11 ARG A 4 -83.73 -79.26 REMARK 500 11 PHE A 8 157.12 65.50 REMARK 500 11 LYS A 24 35.27 -86.19 REMARK 500 11 TYR A 25 139.89 174.96 REMARK 500 11 HIS A 39 -43.29 157.80 REMARK 500 11 GLN A 59 -53.68 74.67 REMARK 500 11 LYS A 61 72.54 55.63 REMARK 500 11 ASP A 62 96.39 -65.10 REMARK 500 11 ALA A 65 -50.34 74.33 REMARK 500 12 LYS A 3 -177.60 54.65 REMARK 500 12 VAL A 6 -75.72 -69.96 REMARK 500 12 PHE A 8 -179.87 57.71 REMARK 500 12 HIS A 39 84.78 115.11 REMARK 500 12 GLN A 59 44.82 -157.58 REMARK 500 12 ALA A 60 -105.42 57.35 REMARK 500 12 LYS A 61 -122.75 -78.81 REMARK 500 12 ASP A 62 53.76 -113.28 REMARK 500 12 LYS A 63 113.90 -160.14 REMARK 500 12 GLN A 66 53.53 -149.59 REMARK 500 13 ARG A 1 169.49 65.27 REMARK 500 13 LYS A 3 5.97 55.71 REMARK 500 13 ARG A 4 -167.50 60.34 REMARK 500 13 ARG A 5 84.46 61.42 REMARK 500 13 LYS A 21 33.63 -85.93 REMARK 500 13 GLN A 22 -60.98 -146.24 REMARK 500 13 LYS A 24 46.74 -84.00 REMARK 500 13 TYR A 25 141.32 79.09 REMARK 500 13 HIS A 39 78.74 103.45 REMARK 500 13 GLN A 59 169.32 73.42 REMARK 500 13 ALA A 60 -71.45 -75.61 REMARK 500 13 LYS A 61 45.36 -156.63 REMARK 500 13 LYS A 63 -1.53 71.98 REMARK 500 14 ARG A 1 176.09 60.95 REMARK 500 14 ARG A 2 -167.37 62.44 REMARK 500 14 LYS A 3 -101.79 50.32 REMARK 500 14 ARG A 4 51.84 -153.15 REMARK 500 14 VAL A 6 -72.27 -75.12 REMARK 500 14 PHE A 8 165.82 64.49 REMARK 500 14 GLN A 22 -76.02 -136.30 REMARK 500 14 LYS A 24 -45.08 69.51 REMARK 500 14 LEU A 26 107.34 21.54 REMARK 500 14 SER A 27 -179.17 -66.22 REMARK 500 14 HIS A 39 100.02 108.48 REMARK 500 14 ARG A 58 -73.48 -66.77 REMARK 500 14 GLN A 59 -46.38 -176.82 REMARK 500 14 LYS A 63 -58.30 70.65 REMARK 500 14 GLN A 66 -68.45 -144.23 REMARK 500 15 ARG A 4 71.46 64.63 REMARK 500 15 PHE A 8 150.37 61.88 REMARK 500 15 GLN A 22 -73.41 -81.33 REMARK 500 15 HIS A 39 78.63 90.72 REMARK 500 15 ALA A 60 -72.81 62.43 REMARK 500 16 ARG A 2 70.98 -170.23 REMARK 500 16 ARG A 5 74.63 61.40 REMARK 500 16 GLN A 22 -67.36 -96.31 REMARK 500 16 HIS A 39 85.07 92.06 REMARK 500 16 LEU A 40 -125.39 -154.14 REMARK 500 16 LYS A 61 -29.95 -159.22 REMARK 500 16 ASP A 62 82.50 -65.21 REMARK 500 17 ARG A 1 175.60 65.24 REMARK 500 17 LYS A 3 168.92 63.76 REMARK 500 17 ARG A 4 -47.73 -172.06 REMARK 500 17 LYS A 24 40.20 -84.61 REMARK 500 17 HIS A 39 93.54 115.93 REMARK 500 17 ALA A 60 -45.16 78.39 REMARK 500 17 LYS A 61 47.35 -82.34 REMARK 500 18 ARG A 2 -150.12 60.94 REMARK 500 18 ARG A 4 73.37 35.38 REMARK 500 18 ARG A 5 87.08 64.43 REMARK 500 18 PHE A 8 -72.68 -140.72 REMARK 500 18 HIS A 39 96.45 100.01 REMARK 500 18 ALA A 60 88.58 92.32 REMARK 500 18 LYS A 61 21.87 -144.01 REMARK 500 19 HIS A 39 78.50 102.60 REMARK 500 19 GLN A 59 111.96 -168.72 REMARK 500 19 LYS A 63 89.22 71.05 REMARK 500 19 ALA A 65 -74.14 -171.12 REMARK 500 20 ARG A 2 19.99 -152.38 REMARK 500 20 ARG A 4 -73.54 68.51 REMARK 500 20 PHE A 8 178.76 59.26 REMARK 500 20 GLN A 22 -62.51 -104.21 REMARK 500 20 HIS A 39 110.80 95.48 REMARK 500 20 LEU A 40 -179.37 170.80 REMARK 500 20 GLN A 59 61.91 36.14 REMARK 500 20 LYS A 61 115.61 72.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 61 ASP A 62 5 -148.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 14 0.09 SIDE_CHAIN REMARK 500 1 TYR A 25 0.08 SIDE_CHAIN REMARK 500 2 TYR A 54 0.07 SIDE_CHAIN REMARK 500 4 TYR A 25 0.08 SIDE_CHAIN REMARK 500 5 ARG A 58 0.08 SIDE_CHAIN REMARK 500 6 TYR A 25 0.10 SIDE_CHAIN REMARK 500 7 TYR A 14 0.07 SIDE_CHAIN REMARK 500 7 TYR A 54 0.09 SIDE_CHAIN REMARK 500 8 TYR A 25 0.07 SIDE_CHAIN REMARK 500 12 TYR A 14 0.09 SIDE_CHAIN REMARK 500 13 ARG A 31 0.09 SIDE_CHAIN REMARK 500 15 TYR A 14 0.07 SIDE_CHAIN REMARK 500 15 ARG A 31 0.09 SIDE_CHAIN REMARK 500 15 TYR A 54 0.08 SIDE_CHAIN REMARK 500 16 TYR A 25 0.07 SIDE_CHAIN REMARK 500 17 TYR A 14 0.07 SIDE_CHAIN REMARK 500 18 TYR A 14 0.09 SIDE_CHAIN REMARK 500 18 TYR A 25 0.07 SIDE_CHAIN REMARK 500 19 TYR A 54 0.06 SIDE_CHAIN REMARK 500 20 ARG A 19 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1FTT A 1 67 UNP P23441 TITF1_RAT 161 227
SEQRES 1 A 68 MET ARG ARG LYS ARG ARG VAL LEU PHE SER GLN ALA GLN SEQRES 2 A 68 VAL TYR GLU LEU GLU ARG ARG PHE LYS GLN GLN LYS TYR SEQRES 3 A 68 LEU SER ALA PRO GLU ARG GLU HIS LEU ALA SER MET ILE SEQRES 4 A 68 HIS LEU THR PRO THR GLN VAL LYS ILE TRP PHE GLN ASN SEQRES 5 A 68 HIS ARG TYR LYS MET LYS ARG GLN ALA LYS ASP LYS ALA SEQRES 6 A 68 ALA GLN GLN
HELIX 1 1 GLN A 10 GLN A 22 1 13 HELIX 2 2 ALA A 28 MET A 37 1 10 HELIX 3 3 PRO A 42 ARG A 58 1 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000