1FOY - Header Asymmetric Unit

HEADER RIBOSOME 26-MAY-97 1FOY

TITLE THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: THREE- TITLE 2 DIMENSIONAL STRUCTURE OF THE RNA-BOUND FORM OF THE PROTEIN, TITLE 3 NMR, MINIMIZED AVERAGE STRUCTURE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN L11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, 75 RESIDUES; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: STRUCTURE OF THE PROTEIN IN THIS ENTRY WAS COMPND 8 DETERMINED AS A 1\:1 COMPLEX WITH ITS TARGET RNA OF 58 COMPND 9 NUCLEOTIDES, BASES 1051 - 1108 OF THE E. COLI SEQUENCE

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BL21

KEYWDS RIBOSOME, PROTEIN/RNA, THIOSTREPTON

EXPDTA SOLUTION NMR

AUTHOR A.P.HINCK,M.A.MARKUS,S.HUANG,S.GRZESIEK,I.KUSTANOVICH, AUTHOR 2 D.E.DRAPER,D.A.TORCHIA

REVDAT 2 24-FEB-09 1FOY 1 VERSN REVDAT 1 26-NOV-97 1FOY 0

JRNL AUTH A.P.HINCK,M.A.MARKUS,S.HUANG,S.GRZESIEK, JRNL AUTH 2 I.KUSTONOVICH,D.E.DRAPER,D.A.TORCHIA JRNL TITL THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: JRNL TITL 2 THREE-DIMENSIONAL STRUCTURE OF THE RNA-BOUND FORM JRNL TITL 3 OF THE PROTEIN AND ITS INTERACTION WITH 23 S RRNA. JRNL REF J.MOL.BIOL. V. 274 101 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9398519 JRNL DOI 10.1006/JMBI.1997.1379

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SUBSTRUCTURE DISTANCE GEOMETRY/ REMARK 3 SIMULATED ANNEALING PROTOCOL

REMARK 4 REMARK 4 1FOY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 320 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX-500, DMX-600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.8 REMARK 210 METHOD USED : SUBSTRUCTURE DISTANCE REMARK 210 GEOMETRY/SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 4 28.71 46.63 REMARK 500 ALA A 11 -70.46 -43.20 REMARK 500 LYS A 16 -74.66 -73.02 REMARK 500 ILE A 20 -169.83 43.78 REMARK 500 SER A 22 52.64 163.53 REMARK 500 SER A 24 -78.51 -91.26 REMARK 500 PRO A 27 -162.06 -76.33 REMARK 500 ASN A 28 -58.15 -163.14 REMARK 500 ASN A 30 167.65 76.34 REMARK 500 LYS A 31 94.51 76.94 REMARK 500 ASP A 50 -24.40 160.95 REMARK 500 ALA A 53 161.49 -43.90 REMARK 500 SER A 55 163.67 163.79 REMARK 500 ILE A 56 -73.79 -43.75 REMARK 500 MET A 70 -77.55 -120.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 29 0.19 SIDE_CHAIN REMARK 500 ARG A 37 0.24 SIDE_CHAIN REMARK 500 ARG A 41 0.29 SIDE_CHAIN REMARK 500 ARG A 61 0.32 SIDE_CHAIN REMARK 500 ARG A 68 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FOW RELATED DB: PDB

DBREF 1FOY A 2 76 UNP P56210 RL11_BACST 59 133

SEQRES 1 A 76 MET THR PHE ILE THR LYS THR PRO PRO ALA ALA VAL LEU SEQRES 2 A 76 LEU LYS LYS ALA ALA GLY ILE GLU SER GLY SER GLY GLU SEQRES 3 A 76 PRO ASN ARG ASN LYS VAL ALA THR ILE LYS ARG ASP LYS SEQRES 4 A 76 VAL ARG GLU ILE ALA GLU LEU LYS MET PRO ASP LEU ASN SEQRES 5 A 76 ALA ALA SER ILE GLU ALA ALA MET ARG MET ILE GLU GLY SEQRES 6 A 76 THR ALA ARG SER MET GLY ILE VAL VAL GLU ASP

HELIX 1 1 ALA A 10 ALA A 17 1 8 HELIX 2 2 ARG A 37 LEU A 46 1 10 HELIX 3 3 ILE A 56 ALA A 67 1 12

SHEET 1 A 2 ALA A 33 LYS A 36 0 SHEET 2 A 2 ILE A 72 GLU A 75 1 N VAL A 73 O ALA A 33

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000