10 20 30 40 50 60 70 80 1FO7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 25-AUG-00 1FO7
TITLE HUMAN PRION PROTEIN MUTANT E200K FRAGMENT 90-231
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PRP(90-231); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETB
KEYWDS CREUTZFELDT-JAKOB DISEASE, PRION, AGGREGATION, MEMBRANE KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR Y.ZHANG,W.SWIETNICKI,M.G.ZAGORSKI,W.K.SUREWICZ, AUTHOR 2 F.D.SOENNICHSEN
REVDAT 4 24-FEB-09 1FO7 1 VERSN REVDAT 3 01-APR-03 1FO7 1 JRNL REVDAT 2 25-APR-01 1FO7 1 KEYWD JRNL REMARK REVDAT 1 21-SEP-00 1FO7 0
JRNL AUTH Y.ZHANG,W.SWIETNICKI,M.G.ZAGORSKI,W.K.SUREWICZ, JRNL AUTH 2 F.D.SONNICHSEN JRNL TITL SOLUTION STRUCTURE OF THE E200K VARIANT OF HUMAN JRNL TITL 2 PRION PROTEIN. IMPLICATIONS FOR THE MECHANISM OF JRNL TITL 3 PATHOGENESIS IN FAMILIAL PRION DISEASES. JRNL REF J.BIOL.CHEM. V. 275 33650 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10954699 JRNL DOI 10.1074/JBC.C000483200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.9 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS CALCULATED FOR REMARK 3 RESIDUE 125-231. THE N-TERMINAL RESIDUES 90-124 ARE FLEXIBLE.
REMARK 4 REMARK 4 1FO7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-00. REMARK 100 THE RCSB ID CODE IS RCSB011763.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM PRP U-15N,13C; 10MM REMARK 210 ACETATE BUFFER; 90% H2O, 10% D2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, 2D NOESY, REMARK 210 HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE SGI6X.M4, FELIX 98, REMARK 210 PIPP 4.24, ARIA 0.9, CNS 0.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A 90 REMARK 465 GLN A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 SER A 97 REMARK 465 GLN A 98 REMARK 465 TRP A 99 REMARK 465 ASN A 100 REMARK 465 LYS A 101 REMARK 465 PRO A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 PRO A 105 REMARK 465 LYS A 106 REMARK 465 THR A 107 REMARK 465 ASN A 108 REMARK 465 MET A 109 REMARK 465 LYS A 110 REMARK 465 HIS A 111 REMARK 465 MET A 112 REMARK 465 ALA A 113 REMARK 465 GLY A 114 REMARK 465 ALA A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 GLY A 123 REMARK 465 GLY A 124
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 132 171.99 -52.92 REMARK 500 1 MET A 134 -71.03 -130.64 REMARK 500 1 PHE A 141 -93.01 -99.71 REMARK 500 1 SER A 143 -154.31 -148.63 REMARK 500 1 ASP A 167 -157.65 -105.59 REMARK 500 1 TYR A 169 74.09 55.25 REMARK 500 2 SER A 132 171.28 -52.00 REMARK 500 2 MET A 134 -65.41 -133.29 REMARK 500 2 SER A 135 121.40 -171.59 REMARK 500 2 PHE A 141 -99.08 -100.61 REMARK 500 2 SER A 143 -154.25 -149.71 REMARK 500 2 ASP A 167 -24.73 -155.19 REMARK 500 2 TYR A 169 -72.61 -67.96 REMARK 500 2 SER A 230 -164.97 58.32 REMARK 500 3 SER A 132 170.23 -52.44 REMARK 500 3 MET A 134 -68.64 -135.08 REMARK 500 3 PHE A 141 -87.65 61.11 REMARK 500 3 ASN A 197 94.90 -160.08 REMARK 500 3 SER A 230 -39.71 -142.45 REMARK 500 4 MET A 134 -70.22 -132.01 REMARK 500 4 PHE A 141 -108.87 -99.72 REMARK 500 4 SER A 143 -153.54 -154.93 REMARK 500 4 TYR A 169 101.38 59.21 REMARK 500 4 SER A 230 -87.51 59.98 REMARK 500 5 SER A 132 170.45 -52.74 REMARK 500 5 MET A 134 -69.15 -134.50 REMARK 500 5 PHE A 141 -102.74 -101.05 REMARK 500 5 SER A 143 -153.58 -154.71 REMARK 500 5 ASP A 167 -156.76 57.19 REMARK 500 5 GLU A 168 46.44 -89.90 REMARK 500 5 SER A 170 -151.70 57.20 REMARK 500 5 ASN A 171 126.70 66.70 REMARK 500 6 SER A 132 170.28 -51.47 REMARK 500 6 MET A 134 -67.41 -134.64 REMARK 500 6 SER A 135 122.02 -172.84 REMARK 500 6 PHE A 141 -111.91 -101.10 REMARK 500 6 SER A 143 -157.83 -154.16 REMARK 500 6 ASP A 167 -75.59 -71.44 REMARK 500 6 GLU A 168 -70.80 -144.11 REMARK 500 6 SER A 170 53.39 -96.74 REMARK 500 6 ASN A 197 93.71 -161.11 REMARK 500 6 SER A 230 31.72 -97.06 REMARK 500 7 SER A 132 172.34 -52.31 REMARK 500 7 MET A 134 -66.01 -134.52 REMARK 500 7 SER A 135 122.05 -174.00 REMARK 500 7 PHE A 141 -87.64 -101.46 REMARK 500 7 SER A 143 -157.12 -138.01 REMARK 500 7 GLU A 168 108.05 62.77 REMARK 500 7 TYR A 169 -174.81 61.94 REMARK 500 7 SER A 230 -60.30 -141.02 REMARK 500 8 SER A 132 169.33 -48.84 REMARK 500 8 PHE A 141 -117.77 -102.15 REMARK 500 8 SER A 143 -153.59 -161.99 REMARK 500 8 GLU A 168 -168.14 56.65 REMARK 500 9 SER A 132 172.48 -51.94 REMARK 500 9 MET A 134 -65.92 -132.91 REMARK 500 9 PHE A 141 -95.63 -99.91 REMARK 500 9 SER A 143 -158.85 -140.52 REMARK 500 9 GLU A 168 -154.90 55.79 REMARK 500 9 TYR A 169 -83.60 -64.15 REMARK 500 9 SER A 170 94.66 -169.31 REMARK 500 10 MET A 134 -69.60 -133.16 REMARK 500 10 PHE A 141 -100.93 -98.78 REMARK 500 10 SER A 143 -152.96 -149.87 REMARK 500 10 TYR A 169 -81.10 -105.33 REMARK 500 10 SER A 170 -160.63 52.56 REMARK 500 10 SER A 230 89.93 58.09 REMARK 500 11 SER A 132 171.60 -52.25 REMARK 500 11 MET A 134 -67.73 -131.58 REMARK 500 11 PHE A 141 -90.65 -101.67 REMARK 500 11 SER A 143 -157.18 -140.41 REMARK 500 11 ASP A 167 175.76 61.80 REMARK 500 11 GLU A 168 -165.65 56.65 REMARK 500 11 TYR A 169 -72.69 -91.35 REMARK 500 11 ASN A 171 51.57 -161.56 REMARK 500 11 SER A 230 83.27 57.83 REMARK 500 12 MET A 134 -65.75 -132.83 REMARK 500 12 SER A 135 127.22 -173.23 REMARK 500 12 PHE A 141 -95.92 -101.55 REMARK 500 12 SER A 143 -154.71 -143.67 REMARK 500 12 ASP A 167 -86.14 -98.94 REMARK 500 12 GLU A 168 -34.84 -160.13 REMARK 500 12 TYR A 169 -75.24 -143.49 REMARK 500 12 ASN A 171 38.57 -147.91 REMARK 500 13 SER A 132 172.14 -54.46 REMARK 500 13 MET A 134 -72.93 -132.96 REMARK 500 13 PHE A 141 -92.70 -101.40 REMARK 500 13 ASP A 167 -86.45 -72.90 REMARK 500 13 GLU A 168 -84.66 -114.05 REMARK 500 13 TYR A 169 36.94 -90.58 REMARK 500 13 SER A 170 -90.88 60.97 REMARK 500 13 ASN A 171 110.52 62.81 REMARK 500 14 SER A 132 164.87 -49.54 REMARK 500 14 MET A 134 -70.80 -133.77 REMARK 500 14 PHE A 141 -100.28 -99.36 REMARK 500 14 SER A 143 -153.66 -149.30 REMARK 500 14 GLU A 168 87.37 57.15 REMARK 500 14 TYR A 169 -99.20 55.64 REMARK 500 14 SER A 170 -97.39 -166.12 REMARK 500 14 ASN A 171 94.27 56.66 REMARK 500 15 SER A 132 172.63 -53.30 REMARK 500 15 MET A 134 -69.61 -133.21 REMARK 500 15 PHE A 141 -85.73 62.85 REMARK 500 15 GLU A 168 -159.67 54.33 REMARK 500 15 ASN A 197 102.02 -162.30 REMARK 500 16 SER A 132 175.75 -52.90 REMARK 500 16 MET A 134 -70.12 -124.99 REMARK 500 16 PHE A 141 -86.08 61.42 REMARK 500 16 GLU A 168 -149.71 55.79 REMARK 500 16 SER A 170 129.02 66.18 REMARK 500 17 SER A 132 170.29 -52.19 REMARK 500 17 MET A 134 -68.43 -132.68 REMARK 500 17 PHE A 141 -105.32 -99.23 REMARK 500 17 SER A 143 -155.71 -149.40 REMARK 500 17 ASP A 167 -162.15 -77.78 REMARK 500 18 SER A 132 169.11 -49.50 REMARK 500 18 MET A 134 -86.59 -132.42 REMARK 500 18 PHE A 141 -97.98 -103.08 REMARK 500 18 SER A 143 -154.85 -143.34 REMARK 500 18 ASP A 167 68.67 -119.10 REMARK 500 18 GLU A 168 -156.12 -165.85 REMARK 500 18 TYR A 169 -145.14 -70.11 REMARK 500 18 SER A 170 -78.70 -49.59 REMARK 500 19 MET A 134 -66.94 -132.63 REMARK 500 19 PHE A 141 -117.55 -101.63 REMARK 500 19 SER A 143 -159.77 -167.69 REMARK 500 19 PRO A 165 130.69 -35.97 REMARK 500 19 ASP A 167 -163.17 -101.97 REMARK 500 19 GLU A 168 -160.02 57.33 REMARK 500 19 TYR A 169 -87.35 -67.24 REMARK 500 19 SER A 170 53.64 -171.74 REMARK 500 20 MET A 134 -71.71 -133.07 REMARK 500 20 PHE A 141 -86.50 62.10 REMARK 500 20 SER A 230 -164.98 58.20 REMARK 500 21 MET A 134 -65.45 -134.54 REMARK 500 21 SER A 135 122.76 -172.41 REMARK 500 21 PHE A 141 -86.67 61.00 REMARK 500 21 MET A 166 -178.47 -66.88 REMARK 500 21 SER A 230 -53.24 -141.77 REMARK 500 22 MET A 134 -74.95 -133.02 REMARK 500 22 PHE A 141 -90.67 -107.28 REMARK 500 22 SER A 143 -156.43 -137.15 REMARK 500 22 ASP A 167 -167.09 -121.58 REMARK 500 22 TYR A 169 179.35 60.54 REMARK 500 23 SER A 132 170.51 -51.99 REMARK 500 23 MET A 134 -66.96 -134.96 REMARK 500 23 PHE A 141 -87.17 62.33 REMARK 500 23 ASP A 167 -87.45 -98.03 REMARK 500 23 GLU A 168 94.58 -171.03 REMARK 500 23 TYR A 169 134.50 65.15 REMARK 500 23 SER A 170 90.22 56.40 REMARK 500 23 ASN A 171 15.86 -157.98 REMARK 500 23 ASN A 197 93.33 -161.95 REMARK 500 24 MET A 134 -69.52 -134.12 REMARK 500 24 PHE A 141 -112.41 -102.68 REMARK 500 24 SER A 143 -160.88 -168.46 REMARK 500 24 ASP A 167 -14.22 -143.59 REMARK 500 24 TYR A 169 -165.00 56.43 REMARK 500 24 SER A 230 21.71 -142.25 REMARK 500 25 SER A 132 171.99 -53.24 REMARK 500 25 MET A 134 -67.33 -131.83 REMARK 500 25 PHE A 141 -85.75 63.41 REMARK 500 25 ASP A 167 -92.92 58.69 REMARK 500 25 GLU A 168 -54.09 -164.41 REMARK 500 26 SER A 132 171.62 -51.21 REMARK 500 26 MET A 134 -69.81 -134.72 REMARK 500 26 PHE A 141 -104.08 -103.94 REMARK 500 27 MET A 134 -68.83 -135.01 REMARK 500 27 PHE A 141 -107.23 -102.59 REMARK 500 27 TYR A 169 42.81 -90.33 REMARK 500 27 SER A 230 -173.93 59.13 REMARK 500 28 MET A 134 -63.49 -134.64 REMARK 500 28 SER A 135 123.89 -173.05 REMARK 500 28 PHE A 141 -98.04 -100.64 REMARK 500 28 SER A 143 -159.69 -138.68 REMARK 500 28 GLU A 168 -115.51 55.62 REMARK 500 28 TYR A 169 -72.68 -72.35 REMARK 500 28 SER A 170 -161.34 54.90 REMARK 500 29 SER A 132 171.64 -53.02 REMARK 500 29 MET A 134 -73.25 -135.46 REMARK 500 29 PHE A 141 -90.30 -129.88 REMARK 500 29 SER A 143 -157.69 -137.04 REMARK 500 29 ASP A 167 -160.59 57.06 REMARK 500 29 SER A 170 -147.17 -87.45 REMARK 500 29 ASN A 171 127.73 67.75 REMARK 500 30 MET A 134 -72.53 -133.34 REMARK 500 30 PHE A 141 -109.85 -103.71 REMARK 500 30 SER A 143 -154.55 -150.85 REMARK 500 30 TYR A 169 152.20 65.23 REMARK 500 30 ASN A 197 87.39 -152.33 REMARK 500 30 SER A 230 -89.77 60.01 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FKC RELATED DB: PDB REMARK 900 1FKC IS THE BEST STRUCTURE IN THIS ENSEMBLE
DBREF 1FO7 A 90 231 UNP P04156 PRIO_HUMAN 90 231
SEQADV 1FO7 LYS A 200 UNP P04156 GLU 200 MUTATION
SEQRES 1 A 142 GLY GLN GLY GLY GLY THR HIS SER GLN TRP ASN LYS PRO SEQRES 2 A 142 SER LYS PRO LYS THR ASN MET LYS HIS MET ALA GLY ALA SEQRES 3 A 142 ALA ALA ALA GLY ALA VAL VAL GLY GLY LEU GLY GLY TYR SEQRES 4 A 142 MET LEU GLY SER ALA MET SER ARG PRO ILE ILE HIS PHE SEQRES 5 A 142 GLY SER ASP TYR GLU ASP ARG TYR TYR ARG GLU ASN MET SEQRES 6 A 142 HIS ARG TYR PRO ASN GLN VAL TYR TYR ARG PRO MET ASP SEQRES 7 A 142 GLU TYR SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL SEQRES 8 A 142 ASN ILE THR ILE LYS GLN HIS THR VAL THR THR THR THR SEQRES 9 A 142 LYS GLY GLU ASN PHE THR LYS THR ASP VAL LYS MET MET SEQRES 10 A 142 GLU ARG VAL VAL GLU GLN MET CYS ILE THR GLN TYR GLU SEQRES 11 A 142 ARG GLU SER GLN ALA TYR TYR GLN ARG GLY SER SER
HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 ASN A 171 GLY A 195 1 25 HELIX 4 4 THR A 199 GLY A 229 1 31
SHEET 1 A 2 MET A 129 GLY A 131 0 SHEET 2 A 2 VAL A 161 TYR A 163 -1 O VAL A 161 N GLY A 131
SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000