1FM1 - Header Asymmetric Unit

HEADER HYDROLASE 15-AUG-00 1FM1

TITLE SOLUTION STRUCTURE OF THE CATALYTIC FRAGMENT OF HUMAN TITLE 2 COLLAGENASE-3 (MMP-13) COMPLEXED WITH A HYDROXAMIC ACID TITLE 3 INHIBITOR

COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC FRAGMENT; COMPND 5 SYNONYM: MMP-13; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: HYDROXAMIC ACID INHIBITOR COMPLEX

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROMMP-13

KEYWDS MATRIX METALLOPROTEINASE, HYDROXAMIC ACID, HUMAN KEYWDS 2 COLLAGENASE-3, MMP-13, HYDROLASE

EXPDTA SOLUTION NMR

NUMMDL 30

AUTHOR F.J.MOY,P.K.CHANDA,J.M.CHEN,S.COSMI,W.EDRIS,J.I.LEVIN, AUTHOR 2 R.POWERS

REVDAT 2 24-FEB-09 1FM1 1 VERSN REVDAT 1 15-AUG-01 1FM1 0

JRNL AUTH F.J.MOY,P.K.CHANDA,J.M.CHEN,S.COSMI,W.EDRIS, JRNL AUTH 2 J.I.LEVIN,R.POWERS JRNL TITL HIGH-RESOLUTION SOLUTION STRUCTURE OF THE JRNL TITL 2 CATALYTIC FRAGMENT OF HUMAN COLLAGENASE-3 (MMP-13) JRNL TITL 3 COMPLEXED WITH A HYDROXAMIC ACID INHIBITOR. JRNL REF J.MOL.BIOL. V. 302 671 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10986126 JRNL DOI 10.1006/JMBI.2000.4082

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.J.MOY,P.K.CHANDA,S.COSMI,W.EDRIS,J.I.LEVIN, REMARK 1 AUTH 2 R.POWERS REMARK 1 TITL 1H, 15N, 13C, AND 13CO ASSIGNMENTS AND SECONDARY REMARK 1 TITL 2 STRUCTURE DETERMINATION OF COLLAGENASE-3 (MMP-13) REMARK 1 TITL 3 COMPLEXED WITH A HYDROXAMIC ACID INHIBITOR REMARK 1 REF J.BIOMOL.NMR V. 17 269 2000 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008305025043

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES CALCULATED WERE BASED ON REMARK 3 3280 EXPERIMENTAL NMR RESTRAINTS, CONSISTING OF 2415 REMARK 3 APPROXIMATE INTERPROTON DISTANCE RESTRAINTS, 47 DISTANCE REMARK 3 RESTRAINTS BETWEEN MMP-13 AND WAY-151693, 5 INTRAMOLECULAR REMARK 3 DISTANCE RESTRAINTS FOR WAY-151693, 88 DISTANCE RESTRAINTS FOR REMARK 3 44 BACKBONE HYDROGEN BONDS, 391 TORSION ANGLE RESTRAINTS, 103 REMARK 3 3JNHA RESTRAINTS 123 CA RESTRAINTS AND 108 CB RESTRAINTS. THE REMARK 3 STRUCTURE WAS ALSO REFINED USING A CONFORMATIONAL DATABASE.

REMARK 4 REMARK 4 1FM1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-00. REMARK 100 THE RCSB ID CODE IS RCSB011701.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 MM DEUTERATED TRIS-BASE, REMARK 210 100 MM NACL, 5 MM CACL2, 0.1 REMARK 210 MM ZNCL2, 2 MM NAN3, 10 MM REMARK 210 DEUTERATED DTT REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM OF U-15N,13C MMP-13 IN REMARK 210 AN EQUIMOLAR COMPLEX WITH WAY- REMARK 210 151693 IN A BUFFER CONTAINING REMARK 210 10 MM DEUTERATED TRIS-BASE, REMARK 210 100 MM NACL, 5 MM CACL2, 0.1 REMARK 210 MM ZNCL2, 2 MM NAN3, 10 MM REMARK 210 DEUTERATED DTT, IN 100% D2O AT REMARK 210 PH 6.5 AND 35C; 1 MM OF U-15N, REMARK 210 13C MMP-13 IN AN EQUIMOLAR REMARK 210 COMPLEX WITH WAY-151693 IN A REMARK 210 BUFFER CONTAINING 10 MM REMARK 210 DEUTERATED TRIS-BASE, 100 MM REMARK 210 NACL, 5 MM CACL2, 0.1 MM REMARK 210 ZNCL2, 2 MM NAN3, 10 MM REMARK 210 DEUTERATED DTT, IN 90% H2O, REMARK 210 10% D2O AT PH 6.5 AND 35C; 1 REMARK 210 MM OF U-15N MMP-13 IN AN REMARK 210 EQUIMOLAR COMPLEX WITH WAY- REMARK 210 151693 IN A BUFFER CONTAINING REMARK 210 10 MM DEUTERATED TRIS-BASE, REMARK 210 100 MM NACL, 5 MM CACL2, 0.1 REMARK 210 MM ZNCL2, 2 MM NAN3, 10 MM REMARK 210 DEUTERATED DTT, IN 90% H2O, REMARK 210 10% D2O AT PH 6.5 AND 35C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HNHA, 3D_ REMARK 210 C13-EDITED/FILTERED-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX-2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.0, NMRPIPE 1.7, X- REMARK 210 PLOR 3.84, PIPP 4.2.8 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND REMARK 210 ENERGY,STRUCTURES WITH THE REMARK 210 LEAST RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE AND REMARK 210 ISOTOPE FILTERED NMR SPECTROSCOPY.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 ASN A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 PRO A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 165

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 22 -167.39 -102.12 REMARK 500 1 LYS A 67 -94.86 -29.92 REMARK 500 1 HIS A 69 9.87 -153.01 REMARK 500 1 PRO A 74 -148.16 -60.98 REMARK 500 1 PRO A 87 161.92 -44.81 REMARK 500 1 PRO A 90 37.44 -70.70 REMARK 500 1 ASN A 91 -130.13 -158.54 REMARK 500 1 HIS A 148 33.05 -154.08 REMARK 500 1 PRO A 152 -179.05 -65.10 REMARK 500 2 TYR A 22 -160.39 -102.71 REMARK 500 2 LYS A 67 -78.97 -15.04 REMARK 500 2 TYR A 73 51.27 -172.30 REMARK 500 2 PRO A 74 160.91 -41.61 REMARK 500 2 PRO A 90 -76.50 -60.44 REMARK 500 2 PRO A 139 14.19 -63.41 REMARK 500 2 SER A 147 -93.13 -176.86 REMARK 500 3 TYR A 22 -161.08 -103.42 REMARK 500 3 PRO A 47 20.54 -72.93 REMARK 500 3 LYS A 67 -78.76 -38.52 REMARK 500 3 PHE A 72 43.65 -73.64 REMARK 500 3 PRO A 87 167.15 -49.67 REMARK 500 3 PRO A 88 73.83 -61.61 REMARK 500 3 PRO A 90 -147.41 -56.04 REMARK 500 3 HIS A 148 29.45 -143.41 REMARK 500 4 PRO A 24 -3.05 -59.22 REMARK 500 4 LYS A 67 -98.01 -17.96 REMARK 500 4 HIS A 69 33.27 -152.89 REMARK 500 4 PRO A 74 -152.67 -60.28 REMARK 500 4 PRO A 90 -153.49 -61.44 REMARK 500 4 MET A 137 24.72 -70.50 REMARK 500 4 PRO A 139 -19.80 -49.55 REMARK 500 4 HIS A 148 27.70 -144.18 REMARK 500 4 PRO A 152 -179.42 -67.81 REMARK 500 5 THR A 23 142.53 -39.86 REMARK 500 5 LYS A 67 -76.48 -21.45 REMARK 500 5 PHE A 72 52.57 -69.75 REMARK 500 5 PRO A 78 -73.19 -74.29 REMARK 500 5 PRO A 88 77.55 -56.29 REMARK 500 5 PRO A 90 -145.90 -57.47 REMARK 500 5 MET A 137 20.88 -69.92 REMARK 500 5 SER A 147 -51.43 -179.78 REMARK 500 6 PRO A 24 -6.94 -57.80 REMARK 500 6 LYS A 67 -77.82 -22.34 REMARK 500 6 PRO A 74 -151.55 -74.12 REMARK 500 6 PRO A 78 -75.11 -73.91 REMARK 500 6 PRO A 88 84.02 -47.48 REMARK 500 6 PRO A 90 -95.88 -76.55 REMARK 500 6 MET A 137 20.92 -72.09 REMARK 500 6 HIS A 148 30.69 -147.62 REMARK 500 7 LYS A 67 -77.99 -38.33 REMARK 500 7 PHE A 72 -169.99 -169.90 REMARK 500 7 PRO A 90 -148.96 -57.94 REMARK 500 7 HIS A 148 68.66 -160.96 REMARK 500 8 PRO A 47 21.23 -73.95 REMARK 500 8 LYS A 67 -76.46 -30.47 REMARK 500 8 GLU A 68 56.57 -66.36 REMARK 500 8 ASP A 71 -128.02 54.81 REMARK 500 8 PHE A 72 -178.74 -54.34 REMARK 500 8 PRO A 88 66.12 -62.12 REMARK 500 8 ASN A 91 -33.47 -141.72 REMARK 500 8 MET A 137 24.35 -71.16 REMARK 500 8 PRO A 139 -8.78 -57.98 REMARK 500 8 HIS A 148 68.20 -158.82 REMARK 500 9 PRO A 47 20.72 -73.13 REMARK 500 9 LYS A 67 -93.19 -1.38 REMARK 500 9 PRO A 88 78.53 -52.35 REMARK 500 9 PRO A 90 -148.96 -56.97 REMARK 500 10 PRO A 24 -8.12 -59.86 REMARK 500 10 LYS A 67 -77.41 -9.30 REMARK 500 10 GLU A 68 94.15 -64.62 REMARK 500 10 PHE A 72 25.33 -71.00 REMARK 500 10 PRO A 78 -72.45 -74.69 REMARK 500 10 PRO A 90 -151.55 -57.10 REMARK 500 10 HIS A 148 29.61 -142.34 REMARK 500 10 PRO A 152 177.09 -56.01 REMARK 500 11 TYR A 22 -163.01 -100.44 REMARK 500 11 PRO A 47 22.17 -76.97 REMARK 500 11 LYS A 67 -78.40 -22.04 REMARK 500 11 ASP A 71 -116.96 -119.76 REMARK 500 11 PRO A 74 -171.36 -57.15 REMARK 500 11 PRO A 90 -155.72 -57.04 REMARK 500 11 MET A 137 17.24 -68.91 REMARK 500 11 HIS A 148 22.90 -144.02 REMARK 500 12 LYS A 67 -79.00 -21.73 REMARK 500 12 ASP A 71 -88.98 -119.96 REMARK 500 12 ALA A 83 172.52 179.06 REMARK 500 12 PRO A 90 -157.94 -54.28 REMARK 500 12 HIS A 148 19.87 -141.75 REMARK 500 13 LYS A 67 -77.96 -36.11 REMARK 500 13 PRO A 90 -144.13 -60.26 REMARK 500 13 MET A 137 23.35 -70.36 REMARK 500 13 HIS A 148 30.77 -146.58 REMARK 500 14 LYS A 67 -80.55 -27.94 REMARK 500 14 HIS A 69 4.98 -157.94 REMARK 500 14 PRO A 90 -151.98 -58.94 REMARK 500 14 PRO A 139 4.96 -68.13 REMARK 500 14 HIS A 148 39.95 -147.50 REMARK 500 15 LYS A 67 -93.24 -1.18 REMARK 500 15 PRO A 90 -144.96 -54.53 REMARK 500 15 SER A 107 -116.47 -89.65 REMARK 500 15 MET A 137 21.42 -70.06 REMARK 500 16 TYR A 22 -168.05 -101.95 REMARK 500 16 LYS A 67 -82.47 -28.80 REMARK 500 16 ASP A 71 140.29 -171.38 REMARK 500 16 PRO A 74 -170.02 -53.67 REMARK 500 16 PRO A 88 75.37 -59.69 REMARK 500 16 PRO A 90 -144.97 -54.91 REMARK 500 17 TYR A 22 75.73 -104.96 REMARK 500 17 THR A 23 144.71 -23.45 REMARK 500 17 LYS A 67 -89.22 -28.94 REMARK 500 17 HIS A 69 24.67 -145.19 REMARK 500 17 PRO A 74 -171.38 -57.45 REMARK 500 17 PRO A 87 171.08 -50.01 REMARK 500 17 PRO A 88 75.88 -63.59 REMARK 500 17 PRO A 90 -152.98 -56.06 REMARK 500 17 MET A 137 9.61 -69.17 REMARK 500 17 HIS A 148 28.89 -143.01 REMARK 500 18 TYR A 22 -169.92 -102.06 REMARK 500 18 LYS A 67 -76.37 -11.33 REMARK 500 18 PRO A 74 -158.30 -66.60 REMARK 500 18 ALA A 83 169.43 179.39 REMARK 500 18 PRO A 88 71.77 -62.70 REMARK 500 18 PRO A 90 -75.92 -48.05 REMARK 500 18 HIS A 148 29.92 -150.25 REMARK 500 19 PRO A 24 -7.87 -57.48 REMARK 500 19 LYS A 67 -77.48 -35.52 REMARK 500 19 TYR A 73 95.73 -35.31 REMARK 500 19 ALA A 83 170.80 179.61 REMARK 500 19 PRO A 87 170.02 -49.38 REMARK 500 19 PRO A 88 58.92 -64.98 REMARK 500 19 PRO A 90 -92.75 -72.82 REMARK 500 19 SER A 147 -81.52 176.26 REMARK 500 19 PRO A 152 178.24 -54.90 REMARK 500 20 PRO A 47 21.91 -74.49 REMARK 500 20 LYS A 67 -91.95 -0.29 REMARK 500 20 PRO A 90 -148.88 -55.49 REMARK 500 20 HIS A 148 67.48 -160.36 REMARK 500 21 PRO A 24 -9.29 -56.76 REMARK 500 21 LYS A 67 -77.98 -23.88 REMARK 500 21 PRO A 88 157.66 -45.09 REMARK 500 21 PRO A 90 -75.21 -49.86 REMARK 500 21 ASN A 91 -40.81 -130.08 REMARK 500 21 PRO A 139 15.42 -65.35 REMARK 500 21 HIS A 148 29.97 -150.01 REMARK 500 22 TYR A 22 -162.92 -103.25 REMARK 500 22 LYS A 67 -77.91 -35.60 REMARK 500 22 PRO A 74 -177.31 -56.70 REMARK 500 22 PRO A 90 -150.41 -57.99 REMARK 500 22 PRO A 139 0.48 -63.90 REMARK 500 22 SER A 147 109.18 -178.37 REMARK 500 23 PRO A 24 -1.17 -50.23 REMARK 500 23 LYS A 67 -78.73 -9.87 REMARK 500 23 PRO A 74 -161.94 -74.18 REMARK 500 23 ALA A 83 175.45 179.97 REMARK 500 23 PRO A 90 -146.35 -55.94 REMARK 500 23 MET A 137 19.84 -69.97 REMARK 500 23 HIS A 148 69.81 -160.01 REMARK 500 24 LYS A 67 -107.47 -8.74 REMARK 500 24 PHE A 72 15.38 57.81 REMARK 500 24 TYR A 92 -7.94 -157.71 REMARK 500 24 MET A 137 23.92 -69.22 REMARK 500 25 TYR A 22 -161.53 -101.68 REMARK 500 25 PRO A 47 16.36 -69.76 REMARK 500 25 LYS A 67 -78.95 -27.60 REMARK 500 25 HIS A 69 -21.63 -165.21 REMARK 500 25 PRO A 88 77.99 -50.05 REMARK 500 25 PRO A 90 -155.36 -55.84 REMARK 500 25 HIS A 148 69.63 -154.27 REMARK 500 26 TYR A 22 77.02 -112.13 REMARK 500 26 THR A 23 150.84 -29.15 REMARK 500 26 LYS A 67 -76.56 -25.58 REMARK 500 26 HIS A 69 -77.35 57.42 REMARK 500 26 PRO A 78 -73.24 -73.51 REMARK 500 26 PRO A 88 81.68 -51.49 REMARK 500 26 PRO A 90 -143.83 -55.22 REMARK 500 26 MET A 137 25.52 -71.28 REMARK 500 26 HIS A 148 33.99 -147.72 REMARK 500 27 TYR A 22 74.96 -101.28 REMARK 500 27 THR A 23 143.14 -24.54 REMARK 500 27 LYS A 67 -77.74 -22.53 REMARK 500 27 PRO A 74 -152.92 -74.65 REMARK 500 27 PRO A 88 75.69 -55.62 REMARK 500 27 PRO A 90 -143.61 -51.56 REMARK 500 27 MET A 137 23.36 -74.41 REMARK 500 27 PRO A 139 -9.94 -59.25 REMARK 500 27 SER A 147 -89.29 165.99 REMARK 500 28 TYR A 22 -160.72 -100.55 REMARK 500 28 PRO A 47 20.84 -73.15 REMARK 500 28 LYS A 67 -93.90 -33.94 REMARK 500 28 PRO A 74 -167.96 -73.53 REMARK 500 28 PRO A 87 160.78 -42.16 REMARK 500 28 PRO A 88 74.66 -66.77 REMARK 500 28 ASN A 91 -98.20 -110.03 REMARK 500 29 PRO A 24 -6.35 -56.46 REMARK 500 29 LYS A 67 -78.51 -9.76 REMARK 500 29 PRO A 74 -164.04 -70.09 REMARK 500 29 PRO A 88 81.70 -47.84 REMARK 500 29 PRO A 90 -115.77 -72.15 REMARK 500 29 MET A 137 20.99 -71.69 REMARK 500 30 TYR A 22 -168.89 -101.75 REMARK 500 30 LYS A 67 -88.52 -0.93 REMARK 500 30 HIS A 69 -155.76 -161.24 REMARK 500 30 TYR A 73 103.54 -42.08 REMARK 500 30 PRO A 87 167.00 -47.08 REMARK 500 30 PRO A 88 63.68 -61.61 REMARK 500 30 PRO A 90 -82.51 -52.72 REMARK 500 30 MET A 137 21.81 -69.90 REMARK 500 30 HIS A 148 74.31 -156.05 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 166 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 123 NE2 REMARK 620 2 HIS A 129 NE2 89.4 REMARK 620 3 WAY A 169 O13 102.6 133.4 REMARK 620 4 WAY A 169 O11 144.0 73.0 71.3 REMARK 620 5 HIS A 119 NE2 75.6 123.5 103.1 140.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 168 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 ASP A 76 OD1 129.0 REMARK 620 3 SER A 79 O 164.5 51.4 REMARK 620 4 GLY A 77 O 87.6 79.1 77.1 REMARK 620 5 PRO A 78 O 100.6 115.3 69.7 62.5 REMARK 620 6 GLU A 102 OE2 65.5 162.5 111.8 93.1 47.7 REMARK 620 7 LEU A 81 O 47.6 126.1 147.5 135.2 117.8 70.2 REMARK 620 8 LEU A 81 N 106.1 76.0 89.2 154.9 132.2 111.6 61.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 167 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 NE2 REMARK 620 2 HIS A 84 NE2 130.8 REMARK 620 3 HIS A 97 ND1 135.5 82.5 REMARK 620 N 1 2

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 166 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 167 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 168 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WAY A 169

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FLS RELATED DB: PDB REMARK 900 1FLS CONTAINS THE RESTRAINED MINIMIZED AVERAGE STRUCTURE REMARK 900 CALCULATED FROM THE ENSEMBLE OF 30 STRUCTURES.

DBREF 1FM1 A 1 165 UNP P45452 MMP13_HUMAN 104 268

SEQRES 1 A 165 TYR ASN VAL PHE PRO ARG THR LEU LYS TRP SER LYS MET SEQRES 2 A 165 ASN LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP MET SEQRES 3 A 165 THR HIS SER GLU VAL GLU LYS ALA PHE LYS LYS ALA PHE SEQRES 4 A 165 LYS VAL TRP SER ASP VAL THR PRO LEU ASN PHE THR ARG SEQRES 5 A 165 LEU HIS ASP GLY ILE ALA ASP ILE MET ILE SER PHE GLY SEQRES 6 A 165 ILE LYS GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 165 SER GLY LEU LEU ALA HIS ALA PHE PRO PRO GLY PRO ASN SEQRES 8 A 165 TYR GLY GLY ASP ALA HIS PHE ASP ASP ASP GLU THR TRP SEQRES 9 A 165 THR SER SER SER LYS GLY TYR ASN LEU PHE LEU VAL ALA SEQRES 10 A 165 ALA HIS GLU PHE GLY HIS SER LEU GLY LEU ASP HIS SER SEQRES 11 A 165 LYS ASP PRO GLY ALA LEU MET PHE PRO ILE TYR THR TYR SEQRES 12 A 165 THR GLY LYS SER HIS PHE MET LEU PRO ASP ASP ASP VAL SEQRES 13 A 165 GLN GLY ILE GLN SER LEU TYR GLY PRO

HET ZN A 166 1 HET ZN A 167 1 HET CA A 168 1 HET WAY A 169 51

HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM WAY N-HYDROXY-2-[(4-METHOXY-BENZENESULFONYL)-PYRIDIN-3- HETNAM 2 WAY YLMETHYL-AMINO]-3-METHYL-BENZAMIDE

HETSYN WAY WAY-151693

FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 WAY C21 H21 N3 O5 S

HELIX 1 1 THR A 27 VAL A 45 1 19 HELIX 2 2 LEU A 113 LEU A 125 1 13 HELIX 3 3 PRO A 152 GLY A 164 1 13

SHEET 1 A 5 ASN A 49 ARG A 52 0 SHEET 2 A 5 ASN A 14 ILE A 19 1 N LEU A 15 O ASN A 49 SHEET 3 A 5 ILE A 60 GLY A 65 1 N ILE A 60 O THR A 16 SHEET 4 A 5 ALA A 96 ASP A 99 1 N ALA A 96 O MET A 61 SHEET 5 A 5 ALA A 83 ALA A 85 -1 O HIS A 84 N HIS A 97 SHEET 1 B 2 TRP A 104 THR A 105 0 SHEET 2 B 2 TYR A 111 ASN A 112 1 O TYR A 111 N THR A 105

LINK ZN ZN A 166 NE2 HIS A 123 1555 1555 2.14 LINK ZN ZN A 166 NE2 HIS A 129 1555 1555 2.10 LINK ZN ZN A 166 O13 WAY A 169 1555 1555 1.88 LINK ZN ZN A 166 O11 WAY A 169 1555 1555 2.43 LINK ZN ZN A 166 NE2 HIS A 119 1555 1555 2.02 LINK CA CA A 168 OD2 ASP A 99 1555 1555 2.98 LINK CA CA A 168 OD1 ASP A 76 1555 1555 2.97 LINK CA CA A 168 O SER A 79 1555 1555 2.93 LINK CA CA A 168 O GLY A 77 1555 1555 2.87 LINK CA CA A 168 O PRO A 78 1555 1555 2.99 LINK CA CA A 168 OE2 GLU A 102 1555 1555 2.97 LINK CA CA A 168 O LEU A 81 1555 1555 2.87 LINK CA CA A 168 N LEU A 81 1555 1555 3.05 LINK NE2 HIS A 69 ZN ZN A 167 1555 1555 2.28 LINK NE2 HIS A 84 ZN ZN A 167 1555 1555 2.08 LINK ND1 HIS A 97 ZN ZN A 167 1555 1555 2.15

SITE 1 AC1 4 HIS A 119 HIS A 123 HIS A 129 WAY A 169 SITE 1 AC2 4 HIS A 69 ASP A 71 HIS A 84 HIS A 97 SITE 1 AC3 8 ASP A 76 GLY A 77 PRO A 78 SER A 79 SITE 2 AC3 8 GLY A 80 LEU A 81 ASP A 99 GLU A 102 SITE 1 AC4 9 GLY A 80 LEU A 81 LEU A 82 LEU A 115 SITE 2 AC4 9 HIS A 119 HIS A 123 HIS A 129 PRO A 139 SITE 3 AC4 9 ZN A 166

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000