10 20 30 40 50 60 70 80 1FKY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA 09-OCT-96 1FKY
TITLE NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE TITLE 2 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*AP*GP*CP*TP*TP*GP*TP*GP*GP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES
KEYWDS DEOXYRIBONUCLEIC ACID, B-DNA, K-RAS
EXPDTA SOLUTION NMR
NUMMDL 2
AUTHOR Y.BOULARD,J.A.H.COGNET,G.V.FAZAKERLEY
REVDAT 3 24-FEB-09 1FKY 1 VERSN REVDAT 2 01-APR-03 1FKY 1 JRNL REVDAT 1 01-APR-97 1FKY 0
JRNL AUTH Y.BOULARD,J.A.COGNET,G.V.FAZAKERLEY JRNL TITL SOLUTION STRUCTURE AS A FUNCTION OF PH OF TWO JRNL TITL 2 CENTRAL MISMATCHES, C . T AND C . C, IN THE 29 TO JRNL TITL 3 39 K-RAS GENE SEQUENCE, BY NUCLEAR MAGNETIC JRNL TITL 4 RESONANCE AND MOLECULAR DYNAMICS. JRNL REF J.MOL.BIOL. V. 268 331 1997 JRNL REFN ISSN 0022-2836 JRNL PMID 9159474 JRNL DOI 10.1006/JMBI.1997.0975
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.BOULARD,J.A.COGNET,J.GABARRO-ARPA,M.LE BRET, REMARK 1 AUTH 2 C.CARBONNAUX,G.V.FAZAKERLEY REMARK 1 TITL SOLUTION STRUCTURE OF AN ONCOGENIC DNA DUPLEX, THE REMARK 1 TITL 2 K-RAS GENE AND THE SEQUENCE CONTAINING A CENTRAL REMARK 1 TITL 3 C.A OR A.G MISMATCH AS A FUNCTION OF PH: NUCLEAR REMARK 1 TITL 4 MAGNETIC RESONANCE AND MOLECULAR DYNAMICS STUDIES REMARK 1 REF J.MOL.BIOL. V. 246 194 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.COGNET,Y.BOULARD,G.V.FAZAKERLEY REMARK 1 TITL HELICAL PARAMETERS, FLUCTUATIONS, ALTERNATIVE REMARK 1 TITL 2 HYDROGEN BONDING, AND BENDING IN OLIGONUCLEOTIDES REMARK 1 TITL 3 CONTAINING A MISMATCHED BASE-PAIR BY NOESY REMARK 1 TITL 4 DISTANCE RESTRAINED AND DISTANCE FREE MOLECULAR REMARK 1 TITL 5 DYNAMICS REMARK 1 REF J.MOL.BIOL. V. 246 209 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH V.GERVAIS,J.A.COGNET,M.LE BRET,L.C.SOWERS, REMARK 1 AUTH 2 G.V.FAZAKERLEY REMARK 1 TITL SOLUTION STRUCTURE OF TWO MISMATCHES A.A AND T.T REMARK 1 TITL 2 IN THE K-RAS GENE CONTEXT BY NUCLEAR MAGNETIC REMARK 1 TITL 3 RESONANCE AND MOLECULAR DYNAMICS REMARK 1 REF EUR.J.BIOCHEM. V. 228 279 1995 REMARK 1 REFN ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MORCAD BY LEBRET ALSO WAS USED.
REMARK 4 REMARK 4 1FKY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 2 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DC A 2 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 1 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DA A 4 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DC A 5 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG A 8 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DC A 9 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 1 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DC B 15 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DT B 16 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT B 17 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 1 DG B 18 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG B 20 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 1 DG B 21 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 2 DG A 1 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 DC A 2 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DA A 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 2 DC A 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DC A 6 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 DG A 8 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DC A 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DT A 10 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DC A 11 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 2 DG B 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DG B 14 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DC B 15 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 DT B 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DT B 17 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DG B 18 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DT B 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 2 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DG B 21 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 2 DC B 22 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FKZ RELATED DB: PDB REMARK 900 ENSEMBLE OF 2 STRUCTURES
DBREF 1FKY A 1 11 PDB 1FKY 1FKY 1 11 DBREF 1FKY B 12 22 PDB 1FKY 1FKY 12 22
SEQRES 1 A 11 DG DC DC DA DC DC DA DG DC DT DC SEQRES 1 B 11 DG DA DG DC DT DT DG DT DG DG DC
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000