10 20 30 40 50 60 70 80 1FJN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 08-AUG-00 1FJN
TITLE SOLUTION STRUCTURE AND ACTIVITY OF THE FOUR DISULFIDE BOND TITLE 2 MEDITERRANEAN MUSSEL DEFENSIN MGD-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN MGD-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: MGD-1 WAS OBTAINED BY SOLID PHASE SYNTHESIS SOURCE 4 BY USING THE FMOC STRATEGY. THE SEQUENCE OF THIS PEPTIDE SOURCE 5 OCCURS NATURALLY IN MEDITERRANEAN MUSSEL (MYTILUS SOURCE 6 GALLOPROVINCIALIS)
KEYWDS DEFENSIN, CYSTINE STABILIZED ALPHA-BETA MOTIF, KEYWDS 2 ANTIBACTERIAL, DISULFIDE BOND, SYNTHESIS, ANTIMICROBIAL KEYWDS 3 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.S.YANG
REVDAT 2 24-FEB-09 1FJN 1 VERSN REVDAT 1 20-DEC-00 1FJN 0
JRNL AUTH Y.S.YANG,G.MITTA,A.CHAVANIEU,B.CALAS,J.F.SANCHEZ, JRNL AUTH 2 P.ROCH,A.AUMELAS JRNL TITL SOLUTION STRUCTURE AND ACTIVITY OF THE SYNTHETIC JRNL TITL 2 FOUR-DISULFIDE BOND MEDITERRANEAN MUSSEL DEFENSIN JRNL TITL 3 (MGD-1). JRNL REF BIOCHEMISTRY V. 39 14436 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 11087396 JRNL DOI 10.1021/BI0011835
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1FJN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-00. REMARK 100 THE RCSB ID CODE IS RCSB011644.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 3.3 REMARK 210 IONIC STRENGTH : ND REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM MGD-1 SOLUTION (0.15ML REMARK 210 IN A SHIGEMI TUBE), PH 3.3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D_COSY_TOCSY_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. SEVERAL DATA SETS WERE RECORDED AT REMARK 210 TEMPERATURE RANGING FROM 280 TO 320 DEGRES KELVIN
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 21 -54.48 -137.00 REMARK 500 4 CYS A 21 -56.26 -125.39 REMARK 500 5 CYS A 21 -53.60 -126.31 REMARK 500 11 CYS A 21 -57.18 -142.23 REMARK 500 15 CYS A 21 -54.00 -128.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 12 0.31 SIDE_CHAIN REMARK 500 1 ARG A 20 0.31 SIDE_CHAIN REMARK 500 1 ARG A 30 0.27 SIDE_CHAIN REMARK 500 1 ARG A 32 0.30 SIDE_CHAIN REMARK 500 1 ARG A 37 0.30 SIDE_CHAIN REMARK 500 2 ARG A 12 0.30 SIDE_CHAIN REMARK 500 2 ARG A 20 0.28 SIDE_CHAIN REMARK 500 2 ARG A 30 0.27 SIDE_CHAIN REMARK 500 2 ARG A 32 0.30 SIDE_CHAIN REMARK 500 2 ARG A 37 0.32 SIDE_CHAIN REMARK 500 3 ARG A 12 0.29 SIDE_CHAIN REMARK 500 3 ARG A 20 0.32 SIDE_CHAIN REMARK 500 3 ARG A 30 0.27 SIDE_CHAIN REMARK 500 3 ARG A 32 0.29 SIDE_CHAIN REMARK 500 3 ARG A 37 0.29 SIDE_CHAIN REMARK 500 4 ARG A 12 0.32 SIDE_CHAIN REMARK 500 4 ARG A 20 0.30 SIDE_CHAIN REMARK 500 4 ARG A 30 0.27 SIDE_CHAIN REMARK 500 4 ARG A 32 0.27 SIDE_CHAIN REMARK 500 4 ARG A 37 0.31 SIDE_CHAIN REMARK 500 5 ARG A 12 0.31 SIDE_CHAIN REMARK 500 5 ARG A 20 0.31 SIDE_CHAIN REMARK 500 5 ARG A 30 0.32 SIDE_CHAIN REMARK 500 5 ARG A 32 0.31 SIDE_CHAIN REMARK 500 5 ARG A 37 0.29 SIDE_CHAIN REMARK 500 6 ARG A 12 0.31 SIDE_CHAIN REMARK 500 6 ARG A 20 0.32 SIDE_CHAIN REMARK 500 6 ARG A 30 0.31 SIDE_CHAIN REMARK 500 6 ARG A 32 0.31 SIDE_CHAIN REMARK 500 6 ARG A 37 0.32 SIDE_CHAIN REMARK 500 7 ARG A 12 0.31 SIDE_CHAIN REMARK 500 7 ARG A 20 0.31 SIDE_CHAIN REMARK 500 7 ARG A 30 0.30 SIDE_CHAIN REMARK 500 7 ARG A 32 0.31 SIDE_CHAIN REMARK 500 7 ARG A 37 0.32 SIDE_CHAIN REMARK 500 8 ARG A 12 0.32 SIDE_CHAIN REMARK 500 8 ARG A 20 0.30 SIDE_CHAIN REMARK 500 8 ARG A 30 0.30 SIDE_CHAIN REMARK 500 8 ARG A 32 0.31 SIDE_CHAIN REMARK 500 8 ARG A 37 0.25 SIDE_CHAIN REMARK 500 9 ARG A 12 0.31 SIDE_CHAIN REMARK 500 9 ARG A 20 0.32 SIDE_CHAIN REMARK 500 9 ARG A 30 0.32 SIDE_CHAIN REMARK 500 9 ARG A 32 0.30 SIDE_CHAIN REMARK 500 9 ARG A 37 0.31 SIDE_CHAIN REMARK 500 10 ARG A 12 0.28 SIDE_CHAIN REMARK 500 10 ARG A 20 0.29 SIDE_CHAIN REMARK 500 10 ARG A 30 0.32 SIDE_CHAIN REMARK 500 10 ARG A 32 0.32 SIDE_CHAIN REMARK 500 10 ARG A 37 0.27 SIDE_CHAIN REMARK 500 11 ARG A 12 0.31 SIDE_CHAIN REMARK 500 11 ARG A 20 0.29 SIDE_CHAIN REMARK 500 11 ARG A 30 0.27 SIDE_CHAIN REMARK 500 11 ARG A 32 0.32 SIDE_CHAIN REMARK 500 11 ARG A 37 0.31 SIDE_CHAIN REMARK 500 12 ARG A 12 0.32 SIDE_CHAIN REMARK 500 12 ARG A 20 0.31 SIDE_CHAIN REMARK 500 12 ARG A 30 0.32 SIDE_CHAIN REMARK 500 12 ARG A 32 0.30 SIDE_CHAIN REMARK 500 12 ARG A 37 0.29 SIDE_CHAIN REMARK 500 13 ARG A 12 0.31 SIDE_CHAIN REMARK 500 13 ARG A 20 0.29 SIDE_CHAIN REMARK 500 13 ARG A 30 0.32 SIDE_CHAIN REMARK 500 13 ARG A 32 0.31 SIDE_CHAIN REMARK 500 13 ARG A 37 0.31 SIDE_CHAIN REMARK 500 14 ARG A 12 0.32 SIDE_CHAIN REMARK 500 14 ARG A 20 0.13 SIDE_CHAIN REMARK 500 14 ARG A 30 0.31 SIDE_CHAIN REMARK 500 14 ARG A 32 0.32 SIDE_CHAIN REMARK 500 14 ARG A 37 0.31 SIDE_CHAIN REMARK 500 15 ARG A 12 0.32 SIDE_CHAIN REMARK 500 15 ARG A 20 0.31 SIDE_CHAIN REMARK 500 15 ARG A 30 0.31 SIDE_CHAIN REMARK 500 15 ARG A 32 0.32 SIDE_CHAIN REMARK 500 15 ARG A 37 0.32 SIDE_CHAIN REMARK 500 16 ARG A 12 0.30 SIDE_CHAIN REMARK 500 16 ARG A 20 0.32 SIDE_CHAIN REMARK 500 16 ARG A 30 0.32 SIDE_CHAIN REMARK 500 16 ARG A 32 0.31 SIDE_CHAIN REMARK 500 16 ARG A 37 0.27 SIDE_CHAIN REMARK 500 17 ARG A 12 0.32 SIDE_CHAIN REMARK 500 17 ARG A 20 0.23 SIDE_CHAIN REMARK 500 17 ARG A 30 0.28 SIDE_CHAIN REMARK 500 17 ARG A 32 0.28 SIDE_CHAIN REMARK 500 17 ARG A 37 0.32 SIDE_CHAIN REMARK 500 18 ARG A 12 0.32 SIDE_CHAIN REMARK 500 18 ARG A 20 0.26 SIDE_CHAIN REMARK 500 18 ARG A 30 0.31 SIDE_CHAIN REMARK 500 18 ARG A 32 0.30 SIDE_CHAIN REMARK 500 18 ARG A 37 0.32 SIDE_CHAIN REMARK 500 19 ARG A 12 0.31 SIDE_CHAIN REMARK 500 19 ARG A 20 0.23 SIDE_CHAIN REMARK 500 19 ARG A 30 0.32 SIDE_CHAIN REMARK 500 19 ARG A 32 0.29 SIDE_CHAIN REMARK 500 19 ARG A 37 0.32 SIDE_CHAIN REMARK 500 20 ARG A 12 0.32 SIDE_CHAIN REMARK 500 20 ARG A 20 0.31 SIDE_CHAIN REMARK 500 20 ARG A 30 0.26 SIDE_CHAIN REMARK 500 20 ARG A 32 0.32 SIDE_CHAIN REMARK 500 20 ARG A 37 0.32 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1FJN A 1 38 UNP P80571 DEFI_MYTGA 1 38
SEQADV 1FJN TRP A 28 UNP P80571 ASP 28 CONFLICT SEQADV 1FJN GLY A 39 UNP P80571 INSERTION
SEQRES 1 A 39 GLY PHE GLY CYS PRO ASN ASN TYR GLN CYS HIS ARG HIS SEQRES 2 A 39 CYS LYS SER ILE PRO GLY ARG CYS GLY GLY TYR CYS GLY SEQRES 3 A 39 GLY TRP HIS ARG LEU ARG CYS THR CYS TYR ARG CYS GLY
HELIX 1 1 ASN A 6 ILE A 17 1 12
SHEET 1 A 2 GLY A 22 CYS A 25 0 SHEET 2 A 2 CYS A 33 TYR A 36 -1 N THR A 34 O TYR A 24
SSBOND 1 CYS A 4 CYS A 25 1555 1555 2.02 SSBOND 2 CYS A 10 CYS A 33 1555 1555 2.02 SSBOND 3 CYS A 14 CYS A 35 1555 1555 2.02 SSBOND 4 CYS A 21 CYS A 38 1555 1555 2.02
CISPEP 1 CYS A 4 PRO A 5 1 -0.17 CISPEP 2 CYS A 4 PRO A 5 2 -0.25 CISPEP 3 CYS A 4 PRO A 5 3 -0.05 CISPEP 4 CYS A 4 PRO A 5 4 0.33 CISPEP 5 CYS A 4 PRO A 5 5 0.14 CISPEP 6 CYS A 4 PRO A 5 6 -0.01 CISPEP 7 CYS A 4 PRO A 5 7 -0.30 CISPEP 8 CYS A 4 PRO A 5 8 -0.24 CISPEP 9 CYS A 4 PRO A 5 9 -0.22 CISPEP 10 CYS A 4 PRO A 5 10 -0.20 CISPEP 11 CYS A 4 PRO A 5 11 -0.19 CISPEP 12 CYS A 4 PRO A 5 12 -0.08 CISPEP 13 CYS A 4 PRO A 5 13 0.16 CISPEP 14 CYS A 4 PRO A 5 14 -0.13 CISPEP 15 CYS A 4 PRO A 5 15 0.17 CISPEP 16 CYS A 4 PRO A 5 16 0.23 CISPEP 17 CYS A 4 PRO A 5 17 -0.41 CISPEP 18 CYS A 4 PRO A 5 18 -0.49 CISPEP 19 CYS A 4 PRO A 5 19 -0.18 CISPEP 20 CYS A 4 PRO A 5 20 -0.25
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000