10 20 30 40 50 60 70 80 1FHK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 01-AUG-00 1FHK
TITLE NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: T7 RNA POLYMERASE RUN-OFF TRANSCRIPTION AND SOURCE 4 CHEMICAL SYNTHESIS
KEYWDS 690 LOOP OF 16S, RIBOSOMAL RNA, NMR
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR S.V.MOROSYUK,P.R.CUNNINGHAM,J.SANTALUCIA JR.
REVDAT 2 24-FEB-09 1FHK 1 VERSN REVDAT 1 21-MAR-01 1FHK 0
JRNL AUTH S.V.MOROSYUK,P.R.CUNNINGHAM,J.SANTALUCIA JR. JRNL TITL STRUCTURE AND FUNCTION OF THE CONSERVED 690 JRNL TITL 2 HAIRPIN IN ESCHERICHIA COLI 16 S RIBOSOMAL RNA. JRNL TITL 3 II. NMR SOLUTION STRUCTURE. JRNL REF J.MOL.BIOL. V. 307 197 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11243814 JRNL DOI 10.1006/JMBI.2000.4431
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 5.0 REMARK 3 AUTHORS : CASE, D.A. ET. AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN WATER WITH COUNTERIONS USING PME
REMARK 4 REMARK 4 1FHK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-00. REMARK 100 THE RCSB ID CODE IS RCSB011593.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 289 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 M REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER 5.0, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 13 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 C A 3 N3 C A 3 C4 0.063 REMARK 500 4 C A 3 C4 C A 3 C5 -0.085 REMARK 500 8 C A 3 N3 C A 3 C4 -0.047 REMARK 500 10 C A 14 N3 C A 14 C4 0.054 REMARK 500 10 C A 14 C4 C A 14 C5 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 U A 6 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 1 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 A A 8 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 8 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 1 A A 9 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 A A 9 N1 - C6 - N6 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 A A 10 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 A A 10 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 A A 10 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 A A 10 N1 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 2 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 U A 6 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 2 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 2 A A 8 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 A A 8 N1 - C6 - N6 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 A A 9 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 A A 9 N1 - C6 - N6 ANGL. DEV. = -3.7 DEGREES REMARK 500 2 A A 10 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 2 A A 10 C4 - C5 - C6 ANGL. DEV. = -3.4 DEGREES REMARK 500 2 A A 10 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 A A 10 N1 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 3 C A 3 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 A A 8 C4 - C5 - C6 ANGL. DEV. = -3.5 DEGREES REMARK 500 3 A A 8 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 A A 8 N1 - C6 - N6 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 A A 10 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 U A 11 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 C A 14 N3 - C2 - O2 ANGL. DEV. = -5.6 DEGREES REMARK 500 4 C A 3 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 4 C A 3 N3 - C4 - N4 ANGL. DEV. = -6.8 DEGREES REMARK 500 4 C A 3 C5 - C4 - N4 ANGL. DEV. = 5.2 DEGREES REMARK 500 4 U A 6 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 4 A A 8 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 4 A A 8 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 4 A A 8 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 4 A A 9 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 A A 9 N1 - C6 - N6 ANGL. DEV. = -4.3 DEGREES REMARK 500 4 A A 10 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 4 A A 10 N1 - C6 - N6 ANGL. DEV. = -3.7 DEGREES REMARK 500 4 U A 11 O4' - C1' - N1 ANGL. DEV. = 8.3 DEGREES REMARK 500 4 U A 11 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 C A 13 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 5 C A 3 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 5 C A 3 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 5 U A 6 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 A A 8 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 5 A A 8 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 A A 8 N1 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 176 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 G A 1 0.09 SIDE_CHAIN REMARK 500 1 G A 5 0.08 SIDE_CHAIN REMARK 500 1 U A 6 0.07 SIDE_CHAIN REMARK 500 1 C A 13 0.07 SIDE_CHAIN REMARK 500 2 G A 1 0.09 SIDE_CHAIN REMARK 500 2 G A 5 0.08 SIDE_CHAIN REMARK 500 2 U A 6 0.07 SIDE_CHAIN REMARK 500 2 C A 13 0.07 SIDE_CHAIN REMARK 500 3 G A 1 0.07 SIDE_CHAIN REMARK 500 3 G A 4 0.09 SIDE_CHAIN REMARK 500 3 G A 5 0.06 SIDE_CHAIN REMARK 500 3 G A 7 0.08 SIDE_CHAIN REMARK 500 3 C A 14 0.14 SIDE_CHAIN REMARK 500 4 G A 5 0.07 SIDE_CHAIN REMARK 500 4 G A 7 0.07 SIDE_CHAIN REMARK 500 4 G A 12 0.13 SIDE_CHAIN REMARK 500 5 G A 5 0.09 SIDE_CHAIN REMARK 500 5 G A 7 0.08 SIDE_CHAIN REMARK 500 5 G A 12 0.08 SIDE_CHAIN REMARK 500 5 C A 13 0.09 SIDE_CHAIN REMARK 500 5 C A 14 0.06 SIDE_CHAIN REMARK 500 6 G A 1 0.12 SIDE_CHAIN REMARK 500 6 G A 2 0.06 SIDE_CHAIN REMARK 500 6 G A 7 0.09 SIDE_CHAIN REMARK 500 6 C A 13 0.09 SIDE_CHAIN REMARK 500 7 G A 2 0.05 SIDE_CHAIN REMARK 500 7 G A 4 0.05 SIDE_CHAIN REMARK 500 7 G A 5 0.06 SIDE_CHAIN REMARK 500 7 G A 7 0.08 SIDE_CHAIN REMARK 500 7 C A 13 0.10 SIDE_CHAIN REMARK 500 8 G A 1 0.11 SIDE_CHAIN REMARK 500 8 G A 5 0.10 SIDE_CHAIN REMARK 500 8 U A 6 0.08 SIDE_CHAIN REMARK 500 8 G A 7 0.08 SIDE_CHAIN REMARK 500 8 C A 13 0.07 SIDE_CHAIN REMARK 500 9 C A 3 0.08 SIDE_CHAIN REMARK 500 9 G A 7 0.08 SIDE_CHAIN REMARK 500 9 C A 14 0.10 SIDE_CHAIN REMARK 500 10 G A 1 0.10 SIDE_CHAIN REMARK 500 10 G A 7 0.06 SIDE_CHAIN REMARK 500 10 G A 12 0.12 SIDE_CHAIN REMARK 500 10 C A 13 0.07 SIDE_CHAIN REMARK 500 11 G A 1 0.07 SIDE_CHAIN REMARK 500 11 G A 5 0.12 SIDE_CHAIN REMARK 500 11 U A 6 0.10 SIDE_CHAIN REMARK 500 11 G A 7 0.09 SIDE_CHAIN REMARK 500 11 G A 12 0.14 SIDE_CHAIN REMARK 500 11 C A 14 0.10 SIDE_CHAIN REMARK 500 12 G A 1 0.09 SIDE_CHAIN REMARK 500 12 G A 5 0.10 SIDE_CHAIN REMARK 500 12 U A 6 0.10 SIDE_CHAIN REMARK 500 12 G A 7 0.11 SIDE_CHAIN REMARK 500 12 A A 10 0.06 SIDE_CHAIN REMARK 500 12 G A 12 0.06 SIDE_CHAIN REMARK 500 12 C A 13 0.09 SIDE_CHAIN REMARK 500 13 G A 7 0.11 SIDE_CHAIN REMARK 500 14 U A 6 0.09 SIDE_CHAIN REMARK 500 14 G A 7 0.09 SIDE_CHAIN REMARK 500 14 A A 10 0.08 SIDE_CHAIN REMARK 500 14 C A 13 0.07 SIDE_CHAIN REMARK 500 15 G A 1 0.08 SIDE_CHAIN REMARK 500 15 G A 5 0.12 SIDE_CHAIN REMARK 500 15 U A 6 0.13 SIDE_CHAIN REMARK 500 15 G A 7 0.07 SIDE_CHAIN REMARK 500 15 C A 13 0.09 SIDE_CHAIN REMARK 500 15 C A 14 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1FHK A 1 14 PDB 1FHK 1FHK 1 14
SEQRES 1 A 14 G G C G G U G A A A U G C SEQRES 2 A 14 C
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000