10 20 30 40 50 60 70 80 1FD6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 19-JUL-00 1FD6
TITLE DELTA0: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 TITLE 2 DOMAIN OF STREPTOCOCCAL PROTEIN G
COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G BINDING PROTEIN G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GB1_DELT0; COMPND 5 SYNONYM: IGG BINDING PROTEIN G; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS STREPTOCOCCAL PROTEIN G, PROTEIN DESIGN, BACKBONE DESIGN, KEYWDS 2 CORE SIDECHAIN PACKING, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 40
AUTHOR S.A.ROSS,C.A.SARISKY,A.SU,S.L.MAYO
REVDAT 2 24-FEB-09 1FD6 1 VERSN REVDAT 1 19-SEP-01 1FD6 0
JRNL AUTH S.A.ROSS,C.A.SARISKY,A.SU,S.L.MAYO JRNL TITL DESIGNED PROTEIN G CORE VARIANTS FOLD TO JRNL TITL 2 NATIVE-LIKE STRUCTURES: SEQUENCE SELECTION BY JRNL TITL 3 ORBIT TOLERATES VARIATION IN BACKBONE JRNL TITL 4 SPECIFICATION. JRNL REF PROTEIN SCI. V. 10 450 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11266631 JRNL DOI 10.1110/PS.32501
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1FD6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-00. REMARK 100 THE RCSB ID CODE IS RCSB011494.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 MM SODIUM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM PROTEIN IN 50 MM SODIUM REMARK 210 PHOSPHATE, PH 6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, E-COSY, REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 5.2F, 5.3B, 6.1B, ANSIG REMARK 210 3.3, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 9 49.19 -95.38 REMARK 500 1 ILE A 40 71.32 -105.59 REMARK 500 1 ASP A 41 46.05 -95.40 REMARK 500 1 THR A 50 18.70 -141.31 REMARK 500 1 LYS A 51 90.35 50.31 REMARK 500 1 THR A 56 108.10 -160.26 REMARK 500 2 ASN A 9 47.25 -96.15 REMARK 500 2 ASP A 23 -177.85 -170.86 REMARK 500 2 ASP A 41 37.67 -98.76 REMARK 500 2 THR A 50 19.04 -147.79 REMARK 500 2 LYS A 51 94.56 51.60 REMARK 500 2 THR A 56 112.26 -160.79 REMARK 500 3 ASN A 9 47.79 -95.82 REMARK 500 3 ILE A 40 73.56 -118.72 REMARK 500 3 ASP A 41 43.20 -95.64 REMARK 500 3 THR A 50 25.11 -147.59 REMARK 500 3 LYS A 51 89.87 52.44 REMARK 500 4 ASN A 9 47.80 -97.65 REMARK 500 4 ASP A 23 -177.92 -172.35 REMARK 500 4 ILE A 40 62.84 -104.53 REMARK 500 4 THR A 50 20.72 -147.70 REMARK 500 4 LYS A 51 89.60 51.65 REMARK 500 4 THR A 56 110.75 -160.30 REMARK 500 5 ASN A 9 45.99 -98.01 REMARK 500 5 ASP A 23 -178.24 -171.01 REMARK 500 5 ILE A 40 63.39 -118.04 REMARK 500 5 THR A 50 18.43 -145.06 REMARK 500 5 LYS A 51 92.71 51.24 REMARK 500 5 THR A 56 109.05 -160.80 REMARK 500 6 ASN A 9 47.95 -95.57 REMARK 500 6 ILE A 40 75.47 -117.65 REMARK 500 6 ASP A 41 39.95 -98.36 REMARK 500 6 THR A 50 17.67 -147.15 REMARK 500 6 LYS A 51 87.00 50.55 REMARK 500 6 THR A 56 109.38 -160.64 REMARK 500 7 ASN A 9 48.91 -96.11 REMARK 500 7 ILE A 40 61.23 -110.64 REMARK 500 7 THR A 50 13.34 -142.75 REMARK 500 7 LYS A 51 90.74 50.08 REMARK 500 7 THR A 56 114.49 -162.31 REMARK 500 8 ASN A 9 47.58 -96.58 REMARK 500 8 THR A 50 18.21 -144.90 REMARK 500 8 LYS A 51 93.19 51.31 REMARK 500 8 THR A 56 108.04 -160.80 REMARK 500 9 ASN A 9 49.18 -96.93 REMARK 500 9 ILE A 40 74.58 -119.07 REMARK 500 9 ASP A 41 39.69 -97.78 REMARK 500 9 THR A 50 21.12 -147.65 REMARK 500 9 LYS A 51 90.83 50.27 REMARK 500 9 THR A 56 109.99 -160.84 REMARK 500 10 ASN A 9 46.81 -96.17 REMARK 500 10 ASP A 23 -179.03 -175.24 REMARK 500 10 ILE A 40 62.91 -115.80 REMARK 500 10 THR A 50 22.75 -148.14 REMARK 500 10 LYS A 51 91.32 51.30 REMARK 500 10 THR A 56 119.37 -162.24 REMARK 500 11 ASN A 9 47.58 -95.13 REMARK 500 11 ILE A 40 59.52 -99.64 REMARK 500 11 THR A 50 12.86 -141.77 REMARK 500 11 LYS A 51 94.41 50.95 REMARK 500 11 THR A 56 109.20 -160.28 REMARK 500 12 ASN A 9 47.73 -95.86 REMARK 500 12 ASP A 23 -179.56 -172.47 REMARK 500 12 ILE A 40 74.64 -115.79 REMARK 500 12 ASP A 41 39.54 -98.25 REMARK 500 12 THR A 50 22.92 -147.14 REMARK 500 12 LYS A 51 94.69 51.67 REMARK 500 12 THR A 56 109.42 -160.19 REMARK 500 13 ASN A 9 47.20 -96.64 REMARK 500 13 ASP A 23 -179.65 -170.67 REMARK 500 13 THR A 50 24.33 -147.49 REMARK 500 13 LYS A 51 93.45 51.69 REMARK 500 13 THR A 56 110.12 -160.52 REMARK 500 14 ASN A 9 48.93 -98.83 REMARK 500 14 ASP A 41 39.70 -98.97 REMARK 500 14 THR A 50 23.02 -147.47 REMARK 500 14 LYS A 51 88.99 52.51 REMARK 500 14 THR A 56 111.62 -160.58 REMARK 500 15 ASN A 9 48.47 -95.60 REMARK 500 15 ASP A 23 -178.24 -173.12 REMARK 500 15 ILE A 40 77.03 -108.79 REMARK 500 15 ASP A 41 39.28 -98.99 REMARK 500 15 THR A 50 24.12 -147.07 REMARK 500 15 LYS A 51 87.35 51.79 REMARK 500 16 ASN A 9 47.59 -96.68 REMARK 500 16 ILE A 40 69.05 -104.21 REMARK 500 16 ASP A 41 49.35 -92.23 REMARK 500 16 THR A 50 14.71 -143.26 REMARK 500 16 LYS A 51 87.12 50.92 REMARK 500 16 THR A 56 116.11 -163.91 REMARK 500 17 ASN A 9 48.07 -95.43 REMARK 500 17 ASP A 23 -172.49 -172.34 REMARK 500 17 ASP A 41 43.95 -95.39 REMARK 500 17 THR A 50 20.11 -148.47 REMARK 500 17 LYS A 51 85.89 51.52 REMARK 500 18 ASN A 9 46.91 -97.30 REMARK 500 18 ASP A 23 -176.45 -173.87 REMARK 500 18 THR A 50 16.46 -144.98 REMARK 500 18 LYS A 51 89.56 50.81 REMARK 500 18 THR A 56 112.65 -160.71 REMARK 500 19 ASN A 9 46.93 -97.24 REMARK 500 19 ASP A 23 -173.27 -172.66 REMARK 500 19 THR A 50 19.89 -147.68 REMARK 500 19 LYS A 51 85.38 50.63 REMARK 500 19 THR A 56 111.06 -161.67 REMARK 500 20 ASN A 9 50.55 -93.94 REMARK 500 20 ALA A 27 -178.80 -63.25 REMARK 500 20 GLU A 28 -63.01 66.36 REMARK 500 20 THR A 50 17.19 -144.83 REMARK 500 20 LYS A 51 91.61 51.27 REMARK 500 20 THR A 56 115.09 -160.92 REMARK 500 21 ASN A 9 47.35 -95.70 REMARK 500 21 ILE A 40 70.32 -119.97 REMARK 500 21 ASP A 41 48.82 -94.55 REMARK 500 21 THR A 50 21.04 -148.82 REMARK 500 21 LYS A 51 92.74 52.54 REMARK 500 22 ASN A 9 49.17 -93.62 REMARK 500 22 ALA A 27 -176.93 -62.26 REMARK 500 22 GLU A 28 -61.73 66.63 REMARK 500 22 THR A 50 14.51 -144.34 REMARK 500 22 LYS A 51 86.72 50.97 REMARK 500 22 THR A 56 108.84 -160.78 REMARK 500 23 ASN A 9 46.79 -95.17 REMARK 500 23 ASP A 41 40.70 -97.76 REMARK 500 23 THR A 50 22.18 -148.61 REMARK 500 23 LYS A 51 90.75 50.88 REMARK 500 23 THR A 56 115.34 -163.49 REMARK 500 24 ASN A 9 49.55 -94.37 REMARK 500 24 THR A 50 17.71 -147.81 REMARK 500 24 LYS A 51 93.06 50.26 REMARK 500 24 THR A 56 112.33 -161.12 REMARK 500 25 ASN A 9 48.00 -95.56 REMARK 500 25 THR A 50 19.51 -147.55 REMARK 500 25 LYS A 51 96.25 51.68 REMARK 500 25 THR A 56 109.70 -160.04 REMARK 500 26 ASN A 9 47.70 -95.12 REMARK 500 26 THR A 50 18.56 -148.18 REMARK 500 26 LYS A 51 94.97 51.30 REMARK 500 26 THR A 56 111.07 -160.35 REMARK 500 27 ASN A 9 47.17 -95.23 REMARK 500 27 ASP A 23 -174.94 -173.07 REMARK 500 27 THR A 50 17.37 -147.06 REMARK 500 27 LYS A 51 86.67 49.87 REMARK 500 28 ASN A 9 47.82 -95.87 REMARK 500 28 ASP A 23 -170.79 -171.24 REMARK 500 28 ILE A 40 62.70 -103.40 REMARK 500 28 THR A 50 15.66 -144.90 REMARK 500 28 LYS A 51 90.34 50.30 REMARK 500 28 THR A 56 109.89 -160.65 REMARK 500 29 ASN A 9 49.58 -97.12 REMARK 500 29 ILE A 40 62.43 -103.64 REMARK 500 29 THR A 50 18.41 -148.16 REMARK 500 29 LYS A 51 93.14 50.72 REMARK 500 29 THR A 56 110.02 -160.72 REMARK 500 30 ASN A 9 47.13 -96.07 REMARK 500 30 ILE A 40 59.70 -115.44 REMARK 500 30 THR A 50 20.28 -148.84 REMARK 500 30 LYS A 51 93.46 52.10 REMARK 500 30 THR A 56 108.90 -160.20 REMARK 500 31 ASN A 9 49.33 -95.72 REMARK 500 31 ILE A 40 59.82 -116.05 REMARK 500 31 THR A 50 21.75 -146.84 REMARK 500 31 LYS A 51 95.32 52.31 REMARK 500 31 THR A 56 111.42 -161.39 REMARK 500 32 ASN A 9 45.20 -97.01 REMARK 500 32 ASP A 23 -174.21 -170.35 REMARK 500 32 ILE A 40 63.03 -103.13 REMARK 500 32 THR A 50 21.84 -148.14 REMARK 500 32 LYS A 51 91.36 51.56 REMARK 500 32 THR A 56 111.01 -160.70 REMARK 500 33 ASN A 9 48.15 -94.18 REMARK 500 33 ASP A 23 -168.38 -170.81 REMARK 500 33 THR A 50 16.83 -145.93 REMARK 500 33 LYS A 51 93.06 51.13 REMARK 500 33 THR A 56 117.02 -162.33 REMARK 500 34 ASN A 9 46.46 -96.16 REMARK 500 34 ASP A 23 -179.36 -170.04 REMARK 500 34 THR A 50 27.82 -148.45 REMARK 500 34 LYS A 51 96.80 52.52 REMARK 500 34 THR A 56 112.34 -161.65 REMARK 500 35 ASN A 9 47.33 -96.13 REMARK 500 35 ILE A 40 58.52 -116.26 REMARK 500 35 THR A 50 19.22 -145.77 REMARK 500 35 LYS A 51 95.65 51.88 REMARK 500 35 THR A 56 116.37 -161.61 REMARK 500 36 ASN A 9 50.12 -93.59 REMARK 500 36 ILE A 40 61.24 -109.22 REMARK 500 36 THR A 50 17.15 -146.88 REMARK 500 36 LYS A 51 93.33 50.88 REMARK 500 36 THR A 56 111.89 -161.88 REMARK 500 37 ASN A 9 48.30 -94.68 REMARK 500 37 THR A 19 -168.59 -161.98 REMARK 500 37 ILE A 40 61.18 -107.52 REMARK 500 37 THR A 50 18.00 -145.76 REMARK 500 37 LYS A 51 96.22 52.15 REMARK 500 38 ASP A 23 -175.35 -175.26 REMARK 500 38 ILE A 40 69.40 -100.09 REMARK 500 38 ASP A 41 51.50 -92.08 REMARK 500 38 THR A 50 15.48 -145.40 REMARK 500 38 LYS A 51 82.24 51.01 REMARK 500 38 THR A 56 110.53 -160.62 REMARK 500 39 ASN A 9 48.30 -95.90 REMARK 500 39 ASP A 23 -173.67 -174.73 REMARK 500 39 ILE A 40 59.09 -104.50 REMARK 500 39 THR A 50 16.86 -147.20 REMARK 500 39 LYS A 51 95.85 52.36 REMARK 500 39 THR A 56 117.08 -162.54 REMARK 500 40 ASN A 9 49.73 -96.28 REMARK 500 40 ASP A 23 -170.20 -172.93 REMARK 500 40 ILE A 40 67.92 -115.15 REMARK 500 40 ASP A 41 51.88 -90.83 REMARK 500 40 THR A 50 23.81 -147.37 REMARK 500 40 LYS A 51 95.38 52.42 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FCL RELATED DB: PDB REMARK 900 DELTA1.5: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 REMARK 900 DOMAIN OF STREPTOCOCCAL PROTEIN G REMARK 900 RELATED ID: 1GB1 RELATED DB: PDB REMARK 900 PROTEIN G (B1 DOMAIN) REMARK 900 RELATED ID: 1GB4 RELATED DB: PDB REMARK 900 HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM REMARK 900 STREPTOCOCCAL PROTEIN G
DBREF 1FD6 A 2 57 UNP P19909 SPG2_STRSG 302 357
SEQADV 1FD6 MET A 1 UNP P19909 INITIATING METHIONINE SEQADV 1FD6 THR A 2 UNP P19909 ASP 302 ENGINEERED SEQADV 1FD6 PHE A 4 UNP P19909 TYR 304 ENGINEERED SEQADV 1FD6 ILE A 8 UNP P19909 LEU 308 ENGINEERED SEQADV 1FD6 ILE A 40 UNP P19909 VAL 340 ENGINEERED
SEQRES 1 A 57 MET THR THR PHE LYS LEU ILE ILE ASN GLY LYS THR LEU SEQRES 2 A 57 LYS GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR SEQRES 3 A 57 ALA GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY SEQRES 4 A 57 ILE ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR SEQRES 5 A 57 PHE THR VAL THR GLU
HELIX 1 1 ASP A 23 GLY A 39 1 17
SHEET 1 A 2 LYS A 5 ILE A 7 0 SHEET 2 A 2 GLU A 16 THR A 18 -1 O THR A 17 N LEU A 6
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000