10 20 30 40 50 60 70 80 1FAF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 13-JUL-00 1FAF
TITLE NMR STRUCTURE OF THE N-TERMINAL J DOMAIN OF MURINE TITLE 2 POLYOMAVIRUS T ANTIGENS.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LARGE T ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE POLYOMAVIRUS; SOURCE 3 ORGANISM_TAXID: 10634; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS J DOMAIN, HPD MOTIF, ANTI-PARALLEL HAIRPIN OF HELICES, KEYWDS 2 VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 47
AUTHOR M.V.BERJANSKII,M.I.RILEY,A.XIE,V.SEMENCHENKO,W.R.FOLK, AUTHOR 2 S.R.VAN DOREN
REVDAT 2 24-FEB-09 1FAF 1 VERSN REVDAT 1 22-NOV-00 1FAF 0
JRNL AUTH M.V.BERJANSKII,M.I.RILEY,A.XIE,V.SEMENCHENKO, JRNL AUTH 2 W.R.FOLK,S.R.VAN DOREN JRNL TITL NMR STRUCTURE OF THE N-TERMINAL J DOMAIN OF MURINE JRNL TITL 2 POLYOMAVIRUS T ANTIGENS. IMPLICATIONS FOR JRNL TITL 3 DNAJ-LIKE DOMAINS AND FOR MUTATIONS OF T ANTIGENS. JRNL REF J.BIOL.CHEM. V. 275 36094 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10950962 JRNL DOI 10.1074/JBC.M006572200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1FAF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON NULL. REMARK 100 THE RCSB ID CODE IS RCSB011439.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.00 REMARK 210 PH : 6.00 REMARK 210 IONIC STRENGTH : 25MM_PHOSPHATE/100MM_KCL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1.7 MM PYJ U-15N; 25 MM REMARK 210 PHOSPHATE BUFFER, 100MM KCL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY- HSQC, REMARK 210 100MS MIXING, 3D_ 13C- REMARK 210 SEPARATED_FSCT-HSMQC -NOESY, REMARK 210 3D_13C-SEPARATED_NOESY- HMQC, REMARK 210 3D_ 13C-SEPARATED_NOESY- REMARK 210 CTHSQC, 200MS MIXING, HNCA-J, REMARK 210 HACAHB-COSY, HNHB, H-D REMARK 210 EXCHANGE DETECTED BY 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.3, SYBYL TRIAD 6.3, REMARK 210 CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING IN REMARK 210 CARTESIAN SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 47 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 18 19.26 54.25 REMARK 500 1 PRO A 20 167.21 -46.83 REMARK 500 1 TRP A 24 108.31 -55.69 REMARK 500 2 ASP A 2 -64.91 -129.71 REMARK 500 2 PRO A 20 167.03 -46.06 REMARK 500 2 TRP A 24 97.58 -56.05 REMARK 500 2 ASN A 72 -73.24 -101.41 REMARK 500 3 LYS A 18 19.44 55.55 REMARK 500 3 TRP A 24 105.81 -55.01 REMARK 500 3 ASN A 72 99.42 -60.02 REMARK 500 4 ASP A 2 -174.02 -66.11 REMARK 500 4 LYS A 18 19.20 56.03 REMARK 500 4 TRP A 24 106.21 -55.38 REMARK 500 4 PRO A 43 -2.92 -58.03 REMARK 500 5 ASP A 2 -169.07 -67.72 REMARK 500 5 LYS A 18 19.66 53.94 REMARK 500 5 PRO A 20 168.83 -49.60 REMARK 500 5 TRP A 24 89.04 -58.24 REMARK 500 5 LEU A 73 -63.16 -128.19 REMARK 500 6 PRO A 20 170.73 -49.41 REMARK 500 6 TRP A 24 101.15 -52.31 REMARK 500 6 PRO A 43 -12.91 -47.89 REMARK 500 6 ASN A 72 37.62 -92.67 REMARK 500 7 ARG A 3 77.90 -100.33 REMARK 500 7 PRO A 20 166.55 -45.41 REMARK 500 7 MET A 71 -62.34 -124.34 REMARK 500 8 LYS A 18 19.77 55.31 REMARK 500 8 PRO A 20 167.74 -45.95 REMARK 500 8 TRP A 24 97.96 -52.94 REMARK 500 8 ASN A 72 -71.90 -93.13 REMARK 500 8 LEU A 73 -70.80 -94.78 REMARK 500 9 LYS A 18 19.98 53.12 REMARK 500 9 PRO A 20 164.43 -45.48 REMARK 500 9 TRP A 24 100.69 -51.59 REMARK 500 10 LYS A 18 19.98 53.12 REMARK 500 10 PRO A 20 164.43 -45.48 REMARK 500 10 TRP A 24 100.69 -51.59 REMARK 500 11 PRO A 20 167.05 -46.38 REMARK 500 11 TRP A 24 92.50 -55.68 REMARK 500 11 ARG A 70 0.91 -68.51 REMARK 500 12 LYS A 18 19.70 54.15 REMARK 500 12 PRO A 20 169.69 -49.43 REMARK 500 12 TRP A 24 97.75 -57.60 REMARK 500 13 LYS A 18 18.52 55.00 REMARK 500 13 PRO A 20 -176.40 -46.70 REMARK 500 13 TRP A 24 92.63 -53.65 REMARK 500 13 ASP A 26 97.51 -57.28 REMARK 500 13 MET A 71 -52.76 -121.42 REMARK 500 13 LEU A 73 -52.01 -142.00 REMARK 500 14 LYS A 18 21.25 48.98 REMARK 500 14 PRO A 20 167.40 -48.37 REMARK 500 14 TRP A 24 109.60 -52.08 REMARK 500 14 PRO A 43 -19.54 -46.69 REMARK 500 14 ASN A 72 39.79 -94.83 REMARK 500 14 LEU A 73 -73.48 -136.29 REMARK 500 15 LYS A 18 19.69 54.44 REMARK 500 15 PRO A 20 168.30 -47.04 REMARK 500 15 TRP A 24 104.27 -56.02 REMARK 500 16 LEU A 73 -67.01 -129.25 REMARK 500 17 ASP A 2 -175.03 -64.55 REMARK 500 17 ARG A 3 71.53 -104.08 REMARK 500 17 LYS A 18 19.35 55.22 REMARK 500 17 PRO A 20 167.60 -45.53 REMARK 500 17 TRP A 24 97.40 -56.47 REMARK 500 17 LEU A 73 39.42 -93.38 REMARK 500 18 ASP A 2 -70.71 -125.50 REMARK 500 18 LYS A 18 19.07 55.78 REMARK 500 18 PRO A 20 166.85 -47.02 REMARK 500 18 TRP A 24 96.47 -55.63 REMARK 500 19 LYS A 18 19.79 54.45 REMARK 500 19 PRO A 20 169.29 -46.63 REMARK 500 19 TRP A 24 108.26 -50.55 REMARK 500 20 PRO A 20 168.31 -47.22 REMARK 500 20 TRP A 24 105.71 -55.89 REMARK 500 20 ASN A 72 -171.71 -67.94 REMARK 500 21 PRO A 20 167.92 -47.99 REMARK 500 21 TRP A 24 96.79 -53.74 REMARK 500 22 PRO A 20 169.11 -48.72 REMARK 500 22 TRP A 24 99.71 -50.66 REMARK 500 22 MET A 71 -60.61 -125.11 REMARK 500 23 LYS A 18 18.62 55.85 REMARK 500 23 PRO A 20 173.91 -58.08 REMARK 500 23 TRP A 24 104.89 -52.85 REMARK 500 24 ASP A 2 -41.63 -171.08 REMARK 500 24 ARG A 3 77.20 -115.67 REMARK 500 24 PRO A 20 168.00 -47.16 REMARK 500 24 ASN A 72 -63.97 -101.21 REMARK 500 25 LYS A 18 18.05 53.96 REMARK 500 25 PRO A 20 -179.81 -50.81 REMARK 500 25 TRP A 24 93.07 -51.62 REMARK 500 25 ASP A 26 82.67 -61.27 REMARK 500 25 THR A 76 -53.79 -124.10 REMARK 500 26 PRO A 20 170.91 -51.66 REMARK 500 26 TRP A 24 100.52 -54.47 REMARK 500 27 PRO A 20 166.08 -47.07 REMARK 500 27 TRP A 24 101.99 -52.13 REMARK 500 27 ASN A 72 -73.00 -90.45 REMARK 500 28 ASP A 2 -56.72 -143.39 REMARK 500 28 PRO A 20 168.52 -48.33 REMARK 500 28 LEU A 73 -38.39 -141.91 REMARK 500 29 ASP A 2 -56.72 -143.39 REMARK 500 29 PRO A 20 168.52 -48.33 REMARK 500 29 LEU A 73 -38.39 -141.91 REMARK 500 30 ARG A 3 75.72 -106.27 REMARK 500 30 PRO A 20 174.34 -49.26 REMARK 500 30 TRP A 24 90.31 -53.88 REMARK 500 30 ASN A 72 93.69 -60.63 REMARK 500 31 LYS A 18 19.55 55.38 REMARK 500 31 PRO A 20 169.15 -48.21 REMARK 500 31 TRP A 24 98.32 -53.36 REMARK 500 31 LEU A 73 -57.04 -136.18 REMARK 500 32 LYS A 18 19.85 53.68 REMARK 500 32 PRO A 20 166.26 -46.06 REMARK 500 32 TRP A 24 100.98 -52.75 REMARK 500 32 LYS A 45 31.01 -99.92 REMARK 500 33 ASP A 2 -36.75 -156.29 REMARK 500 33 PRO A 20 168.17 -47.53 REMARK 500 33 TRP A 24 97.19 -51.88 REMARK 500 33 PRO A 43 -16.30 -45.61 REMARK 500 34 LYS A 18 19.05 54.40 REMARK 500 34 PRO A 20 168.24 -46.19 REMARK 500 35 PRO A 20 166.92 -43.98 REMARK 500 35 TRP A 24 100.46 -52.60 REMARK 500 36 LYS A 18 18.89 53.44 REMARK 500 36 PRO A 20 176.61 -52.67 REMARK 500 36 ASP A 26 89.96 -63.93 REMARK 500 36 LEU A 73 78.41 -120.00 REMARK 500 37 LYS A 18 19.07 52.93 REMARK 500 37 PRO A 20 170.81 -52.25 REMARK 500 37 TRP A 24 100.85 -49.37 REMARK 500 37 LEU A 73 -61.34 -123.94 REMARK 500 38 LYS A 18 19.10 55.19 REMARK 500 38 PRO A 20 169.91 -47.21 REMARK 500 38 TRP A 24 102.44 -52.93 REMARK 500 38 ASN A 72 -67.46 -97.53 REMARK 500 38 LEU A 73 79.13 -69.69 REMARK 500 39 LYS A 18 19.50 53.93 REMARK 500 39 PRO A 20 166.07 -46.48 REMARK 500 39 TRP A 24 98.37 -54.84 REMARK 500 39 PHE A 78 31.52 -89.97 REMARK 500 40 LYS A 18 18.73 55.50 REMARK 500 40 PRO A 20 -179.48 -52.18 REMARK 500 40 ASP A 26 93.84 -58.72 REMARK 500 40 LYS A 45 30.33 -99.14 REMARK 500 40 LEU A 73 41.68 -97.63 REMARK 500 41 ASP A 2 -71.39 -128.00 REMARK 500 41 LYS A 18 19.11 55.31 REMARK 500 41 PRO A 20 165.02 -39.92 REMARK 500 41 TRP A 24 98.29 -44.68 REMARK 500 42 ASP A 2 -174.97 -62.41 REMARK 500 42 PRO A 20 170.06 -49.57 REMARK 500 42 TRP A 24 92.54 -51.73 REMARK 500 42 LYS A 45 31.08 -95.46 REMARK 500 43 ASP A 2 -64.80 -171.04 REMARK 500 43 PRO A 20 165.08 -48.88 REMARK 500 43 PHE A 78 179.95 -57.95 REMARK 500 44 LYS A 18 19.05 55.14 REMARK 500 44 PRO A 20 167.28 -44.49 REMARK 500 44 TRP A 24 93.53 -47.49 REMARK 500 44 LEU A 73 -67.35 -129.98 REMARK 500 45 LYS A 18 19.89 54.47 REMARK 500 45 PRO A 20 169.92 -49.32 REMARK 500 45 ASN A 72 108.62 -59.74 REMARK 500 45 LEU A 73 -58.77 -123.51 REMARK 500 46 LYS A 18 19.80 54.39 REMARK 500 46 PRO A 20 165.90 -42.54 REMARK 500 46 TRP A 24 109.49 -52.72 REMARK 500 47 LYS A 18 19.01 55.63 REMARK 500 47 PRO A 20 169.39 -46.55 REMARK 500 47 TRP A 24 92.37 -54.87 REMARK 500 47 ASN A 72 -73.40 -101.54 REMARK 500 47 LEU A 73 36.47 -89.85 REMARK 500 REMARK 500 REMARK: NULL
DBREF 1FAF A 1 79 UNP P03074 TALA_POVM3 1 79
SEQRES 1 A 79 MET ASP ARG VAL LEU SER ARG ALA ASP LYS GLU ARG LEU SEQRES 2 A 79 LEU GLU LEU LEU LYS LEU PRO ARG GLN LEU TRP GLY ASP SEQRES 3 A 79 PHE GLY ARG MET GLN GLN ALA TYR LYS GLN GLN SER LEU SEQRES 4 A 79 LEU LEU HIS PRO ASP LYS GLY GLY SER HIS ALA LEU MET SEQRES 5 A 79 GLN GLU LEU ASN SER LEU TRP GLY THR PHE LYS THR GLU SEQRES 6 A 79 VAL TYR ASN LEU ARG MET ASN LEU GLY GLY THR GLY PHE SEQRES 7 A 79 GLN
HELIX 1 1 SER A 6 LYS A 18 1 13 HELIX 2 2 ASP A 26 LEU A 41 1 16 HELIX 3 3 HIS A 42 GLY A 46 5 5 HELIX 4 4 SER A 48 ARG A 70 1 23
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000