1F7I - Header Asymmetric Unit

HEADER RNA 27-JUN-00 1F7I

TITLE SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U TITLE 2 MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) TITLE 3 HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNASE P RNA RIBOZYME, P4 DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P4 STEM; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED FROM DNA OLIGONUCLEOTIDE SOURCE 4 TEMPLATE BY T7 RNA POLYMERASE

KEYWDS RIBONUCLEASE P, RIBOZYME, TRANSFER RNA PROCESSING, P4 STEM, KEYWDS 2 C70U MUTANT, METAL BINDING SITE, METAL COMPLEX, COBALT KEYWDS 3 (III) HEXAMMINE COMPLEX

EXPDTA SOLUTION NMR

NUMMDL 12

AUTHOR M.SCHMITZ,I.TINOCO JR.

REVDAT 2 24-FEB-09 1F7I 1 VERSN REVDAT 1 09-OCT-00 1F7I 0

JRNL AUTH M.SCHMITZ,I.TINOCO JR. JRNL TITL SOLUTION STRUCTURE AND METAL-ION BINDING OF THE P4 JRNL TITL 2 ELEMENT FROM BACTERIAL RNASE P RNA. JRNL REF RNA V. 6 1212 2000 JRNL REFN ISSN 1355-8382 JRNL PMID 10999599 JRNL DOI 10.1017/S1355838200000881

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.841 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 268 NOE DERIVED DISTANCE CONSTRAINTS, 171 DIHEDRAL REMARK 3 RESTRAINTS AND 49 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. 12 REMARK 3 NOE DERIVED INTERMOLECULAR DISTANCE CONSTRAINTS WERE USED TO REMARK 3 LOCALIZE THE BOUND COBALT(III) HEXAMMINE. THE 12 STRUCTURES REMARK 3 WITH LOWEST NOE AND DIHEDRAL ANGLE VIOLATION ENERGIES ARE REMARK 3 PRESENTED

REMARK 4 REMARK 4 1F7I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011338.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288; 288; 288 REMARK 210 PH : 6.5; 6.5; 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100 MM NA; 100 MM NA; 100 MM REMARK 210 NA, 10 MM MG; 100 MM NA, 3 MM REMARK 210 CO(NH3)6 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM P4M RNA; 100 MM SODIUM REMARK 210 CHLORIDE; 10 MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 2 MM REMARK 210 P4M RNA; 100 MM SODIUM REMARK 210 CHLORIDE; 10 MM PHOSPHATE REMARK 210 BUFFER; 99.96% D2O; 2 MM P4M REMARK 210 RNA; 100 MM SODIUM CHLORIDE; REMARK 210 10 MM MAGNESIUM CHLORIDE; 10 REMARK 210 MM PHOSPHATE BUFFER; 90% H2O, REMARK 210 10% D2O; 2 MM P4M RNA; 100 MM REMARK 210 SODIUM CHLORIDE; 3 MM REMARK 210 HEXAMMINE COBALT CHLORIDE; 10 REMARK 210 MM PHOSPHATE BUFFER; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 31P-1H- REMARK 210 COSY, 13C-1H-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.1, FELIX 95, X-PLOR REMARK 210 3.841 REMARK 210 METHOD USED : RESTRAINED MOLECULAR REMARK 210 DYNAMICS; SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES AND 13C AND 31P HETERONUCLEAR REMARK 210 TECHNIQUES AT NATURAL ABUNDANCE. DISTANCE CONSTRAINTS DERIVED REMARK 210 FROM INTERMOLECULAR NOE CROSSPEAKS BETWEEN RNA PROTONS AND REMARK 210 COBALT (III) HEXAMMINE PROTONS WERE USED TO DETERMINE THE SITE REMARK 210 OF COBALT (III) HEXAMMINE BINDING IN THE COMPLEX STRUCTURE

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NCO A 28

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F79 RELATED DB: PDB REMARK 900 CONTAINS THE AVERAGE COMPLEX STRUCTURE CALCULATED FROM THIS REMARK 900 ENSEMBLE

DBREF 1F7I A 1 27 PDB 1F7I 1F7I 1 27

SEQRES 1 A 27 G G A A G U U C G G U C U SEQRES 2 A 27 U C G G A C C G G C U U C SEQRES 3 A 27 C

HET NCO A 28 25

HETNAM NCO COBALT HEXAMMINE(III)

FORMUL 2 NCO CO H18 N6 3+

SITE 1 AC1 4 G A 5 U A 6 G A 21 G A 22

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000