1F64 - Header Asymmetric Unit

HEADER TRANSPORT 20-JUN-00 1F64

TITLE LEU55PRO TTR-IDOX THEORETICAL MODEL

COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TTR, IODX; COMPND 5 SYNONYM: PREALBUMIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: BACTERIA

KEYWDS TRANTHYRETIN, AMYLOID, MOLECULAR MODELLING, AMYLOID KEYWDS 2 INHIBITOR, PROTEIN-ANTHRACYCLINE COMPLEX

EXPDTA THEORETICAL MODEL

AUTHOR M.P.SEBASTIAO

REVDAT 1 20-JUN-01 1F64 0

JRNL AUTH M.P.SEBASTIAO,G.MERLINI,M.J.SARAIVA,A.M.DAMAS JRNL TITL THE MOLECULAR INTERACTION OF JRNL TITL 2 4'-IODO-4'-DEOXYDOXORUBICIN WITH LEU-55PRO JRNL TITL 3 TRANSTHYRETIN 'AMYLOID-LIKE' OLIGOMER LEADING TO JRNL TITL 4 DISAGGREGATION. JRNL REF BIOCHEM.J. V. 351 273 2000 JRNL REFN ASTM BIJOAK UK ISSN 0306-3275

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GRAMM 1.1 REMARK 3 AUTHORS : VAKSER, I. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1F64 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-2000. REMARK 100 THE RCSB ID CODE IS RCSB011289.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 92 CG CD OE1 OE2

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O ASP A 38 N THR A 40 2.12

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TTR RELATED DB: PDB REMARK 900 LEU55PRO TTR CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1IMR RELATED DB: PDB REMARK 900 IDOX STRUCTURE

DBREF 1F64 A 1 127 UNP P02766 TTHY_HUMAN 21 147

SEQADV 1F64 PRO A 55 UNP P02766 LEU 75 ENGINEERED

SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU PRO HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU

HET DM7 7 39

HETNAM DM7 4'-DEOXY-4'-IODODOXORUBICIN

HETSYN DM7 4'-DEOXY-4'-IODOADRIAMYCIN

FORMUL 2 DM7 C27 H29 I N O10 1+

HELIX 1 1 ASP A 74 ALA A 81 1 8

SHEET 1 A 4 SER A 23 PRO A 24 0 SHEET 2 A 4 MET A 13 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 4 ARG A 104 SER A 112 1 O TYR A 105 N MET A 13 SHEET 4 A 4 SER A 115 THR A 123 -1 O SER A 115 N SER A 112 SHEET 1 B 4 THR A 40 LYS A 48 0 SHEET 2 B 4 ALA A 29 ALA A 36 -1 N VAL A 30 O GLY A 47 SHEET 3 B 4 GLY A 67 ILE A 73 -1 O ILE A 68 N LYS A 35 SHEET 4 B 4 ALA A 91 ALA A 97 -1 O ALA A 91 N ILE A 73

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000