1F5U - Header Asymmetric Unit

HEADER RNA 16-JUN-00 1F5U

TITLE SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM- TITLE 2 LOOP IN THE 5'-END DIMERIZATION SIGNAL OF MOLONEY MURINE TITLE 3 LEUKEMIA VIRUS GENOMIC RNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*UP*GP*GP*GP*AP*GP*AP*CP*GP*UP*CP*CP*CP*AP*CP*C)- COMPND 4 3'); COMPND 5 CHAIN: A, B; COMPND 6 FRAGMENT: 18 MER RNA SEQUENCE MIMICKING H3 GACG STEM-LOOP; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: H3 GACG STEM-LOOP IN THE 5'-END COMPND 9 DIMERIZATION SIGNAL SEQUENCE OF MOLONEY MURINE LEUKEMIA COMPND 10 VIRUS GENOMIC RNA

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN MOLONEY SOURCE 4 MURINE LEUKEMIA VIRUS

KEYWDS NMR, RETROVIRUS, MOLONEY MURINE LEUKEMIA VIRUS, KEYWDS 2 DIMERIZATION, TETRALOOP, STEM-LOOP, KISSING DIMER, RNA

EXPDTA SOLUTION NMR

AUTHOR C.-H.KIM,I.TINOCO JR.

REVDAT 4 24-FEB-09 1F5U 1 VERSN REVDAT 3 01-APR-03 1F5U 1 JRNL REVDAT 2 04-SEP-00 1F5U 1 REMARK REVDAT 1 21-AUG-00 1F5U 0

JRNL AUTH C.H.KIM,I.TINOCO JR. JRNL TITL A RETROVIRAL RNA KISSING COMPLEX CONTAINING ONLY JRNL TITL 2 TWO G.C BASE PAIRS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 9396 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10931958 JRNL DOI 10.1073/PNAS.170283697

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : AXEL BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 852 RESTRAINTS, 528 NOE-DERIVED DISTANCE CONSTRAINTS, 324 REMARK 3 DIHEDRAL CONSTRAINTS

REMARK 4 REMARK 4 1F5U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011279.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 283 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM RNA SAMPLE, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA; REMARK 210 2 MM RNA SAMPLE, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 910901, XWINNMR, FELIX REMARK 210 95.0, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 19 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGED AND ENERGY-MINIMIZED REMARK 210 STRUCTURE BASED ON 19 REMARK 210 CONVERGED STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 1F5U A 1 18 PDB 1F5U 1F5U 1 18 DBREF 1F5U B 1 18 PDB 1F5U 1F5U 1 18

SEQRES 1 A 18 G G U G G G A G A C G U C SEQRES 2 A 18 C C A C C SEQRES 1 B 18 G G U G G G A G A C G U C SEQRES 2 B 18 C C A C C

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000