10 20 30 40 50 60 70 80 1F0O - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE/DNA 16-MAY-00 1F0O
TITLE PVUII ENDONUCLEASE/COGNATE DNA COMPLEX (GLUTARALDEHYDE- TITLE 2 CROSSLINKED CRYSTAL) AT PH 7.5 WITH TWO CALCIUM IONS AT TITLE 3 EACH ACTIVE SITE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3'); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SELF-ANNEALING OLIGONUCLEOTIDE CONTAINING COMPND 6 COGNATE SIX BASE PAIR SEQUENCE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TYPE II RESTRICTION ENZYME PVUII; COMPND 9 CHAIN: A, B; COMPND 10 SYNONYM: PVUII ENDONUCLEASE, R.PVUII; COMPND 11 EC: 3.1.21.4; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: PROTEUS VULGARIS; SOURCE 5 ORGANISM_TAXID: 585; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPR594
KEYWDS PROTEIN-DNA COMPLEX, ENDONUCLEASE TYPE II, RESTRICTION KEYWDS 2 ENZYME, CATALYTIC METAL VISUALIZATION, HYDROLASE/DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.R.HORTON,X.CHENG
REVDAT 2 24-FEB-09 1F0O 1 VERSN REVDAT 1 06-NOV-00 1F0O 0
JRNL AUTH J.R.HORTON,X.CHENG JRNL TITL PVUII ENDONUCLEASE CONTAINS TWO CALCIUM IONS IN JRNL TITL 2 ACTIVE SITES. JRNL REF J.MOL.BIOL. V. 300 1049 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10903853 JRNL DOI 10.1006/JMBI.2000.3938
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.R.HORTON,H.G.NASTRI,P.D.RIGGS,X.CHENG REMARK 1 TITL ASP34 OF PVUII ENDONUCLEASE IS DIRECTLY INVOLVED REMARK 1 TITL 2 IN DNA MINOR GROOVE RECOGNITION AND INDIRECTLY REMARK 1 TITL 3 INVOLVED IN CATALYSIS REMARK 1 REF J.MOL.BIOL. V. 284 1491 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1998.2269 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.HORTON,J.BONVENTRE,X.CHENG REMARK 1 TITL HOW IS MODIFICATION OF THE DNA SUBSTRATE REMARK 1 TITL 2 RECOGNIZED BY THE PVUII RESTRICTION ENDONUCLEASE? REMARK 1 REF BIOL.CHEM. V. 379 451 1998 REMARK 1 REFN ISSN 1431-6730
REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 12739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2449 REMARK 3 NUCLEIC ACID ATOMS : 511 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1F0O COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-00. REMARK 100 THE RCSB ID CODE IS RCSB011100.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-99 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13150 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, CACL2, PH REMARK 280 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.02150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.99650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.35100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.99650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.02150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.35100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSISTING OF REMARK 300 PROTEIN CHAIN A AND CHAIN B AND DOUBLE STRAINED DNA CONSISTING REMARK 300 OF CHAINS C AND D WITH TWO CA+2 AT EACH MONOMERIC ACTIVE SITE.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 53 REMARK 465 ARG A 54 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 GLY B 53 REMARK 465 ARG B 54
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC D 14 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DC D 14 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC D 14 C6 REMARK 470 HIS A 3 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 PRO A 52 O REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 TYR A 132 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 PRO B 52 O REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 137 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 984 O HOH B 985 2.05 REMARK 500 O HOH A 803 O HOH B 975 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 82 -74.85 -124.93 REMARK 500 TRP A 131 -70.41 -55.09 REMARK 500 ASP A 134 5.87 -59.82 REMARK 500 ASN A 141 70.97 49.90 REMARK 500 ASP B 34 29.57 48.83 REMARK 500 ILE B 74 2.19 -67.85 REMARK 500 THR B 82 -66.71 -120.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG C 8 0.07 SIDE_CHAIN REMARK 500 DT D 2 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 5.45 ANGSTROMS REMARK 525 HOH B 943 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 860 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 5.20 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 847 O REMARK 620 2 DC D 9 OP1 85.7 REMARK 620 3 ASP A 58 OD2 77.9 76.6 REMARK 620 4 GLU A 68 OE2 143.0 82.3 65.3 REMARK 620 5 LEU A 69 O 72.9 148.7 76.6 101.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 784 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 981 O REMARK 620 2 GLY A 56 O 125.3 REMARK 620 3 ASP A 58 OD1 155.9 75.2 REMARK 620 4 DC D 9 OP1 85.3 142.0 71.1 REMARK 620 5 GLU A 68 OE1 99.9 87.1 93.1 111.3 REMARK 620 6 GLU A 68 OE2 82.3 127.7 94.5 72.6 41.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 725 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 68 OE2 REMARK 620 2 ASP B 58 OD2 63.3 REMARK 620 3 GLU B 68 OE1 46.4 62.9 REMARK 620 4 GLU B 55 O 175.2 121.5 135.3 REMARK 620 5 GLY B 56 O 127.8 95.7 81.4 54.3 REMARK 620 6 ASP B 58 OD1 104.6 41.8 95.0 80.0 74.3 REMARK 620 7 HOH C1028 O 93.3 156.5 100.6 82.0 98.3 161.6 REMARK 620 8 DC C 9 OP1 80.3 81.6 124.4 99.2 147.1 82.6 96.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 761 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD2 REMARK 620 2 GLU B 68 OE2 82.1 REMARK 620 3 LEU B 69 O 93.7 110.8 REMARK 620 4 HOH B 762 O 84.8 166.1 74.5 REMARK 620 5 HOH C 898 O 164.6 108.6 92.8 83.5 REMARK 620 6 DC C 9 OP1 93.2 85.1 163.4 91.2 77.1 REMARK 620 N 1 2 3 4 5
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 725 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 761 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 784
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EYU RELATED DB: PDB REMARK 900 RELATED ID: 3PYI RELATED DB: PDB REMARK 900 RELATED ID: 2PYI RELATED DB: PDB REMARK 900 RELATED ID: 1PVI RELATED DB: PDB
DBREF 1F0O A 1 157 UNP P23657 T2P2_PROVU 1 157 DBREF 1F0O B 1 157 UNP P23657 T2P2_PROVU 1 157 DBREF 1F0O C 2 14 PDB 1F0O 1F0O 2 14 DBREF 1F0O D 2 14 PDB 1F0O 1F0O 2 14
SEQRES 1 C 13 DT DG DA DC DC DA DG DC DT DG DG DT DC SEQRES 1 D 13 DT DG DA DC DC DA DG DC DT DG DG DT DC SEQRES 1 A 157 MET SER HIS PRO ASP LEU ASN LYS LEU LEU GLU LEU TRP SEQRES 2 A 157 PRO HIS ILE GLN GLU TYR GLN ASP LEU ALA LEU LYS HIS SEQRES 3 A 157 GLY ILE ASN ASP ILE PHE GLN ASP ASN GLY GLY LYS LEU SEQRES 4 A 157 LEU GLN VAL LEU LEU ILE THR GLY LEU THR VAL LEU PRO SEQRES 5 A 157 GLY ARG GLU GLY ASN ASP ALA VAL ASP ASN ALA GLY GLN SEQRES 6 A 157 GLU TYR GLU LEU LYS SER ILE ASN ILE ASP LEU THR LYS SEQRES 7 A 157 GLY PHE SER THR HIS HIS HIS MET ASN PRO VAL ILE ILE SEQRES 8 A 157 ALA LYS TYR ARG GLN VAL PRO TRP ILE PHE ALA ILE TYR SEQRES 9 A 157 ARG GLY ILE ALA ILE GLU ALA ILE TYR ARG LEU GLU PRO SEQRES 10 A 157 LYS ASP LEU GLU PHE TYR TYR ASP LYS TRP GLU ARG LYS SEQRES 11 A 157 TRP TYR SER ASP GLY HIS LYS ASP ILE ASN ASN PRO LYS SEQRES 12 A 157 ILE PRO VAL LYS TYR VAL MET GLU HIS GLY THR LYS ILE SEQRES 13 A 157 TYR SEQRES 1 B 157 MET SER HIS PRO ASP LEU ASN LYS LEU LEU GLU LEU TRP SEQRES 2 B 157 PRO HIS ILE GLN GLU TYR GLN ASP LEU ALA LEU LYS HIS SEQRES 3 B 157 GLY ILE ASN ASP ILE PHE GLN ASP ASN GLY GLY LYS LEU SEQRES 4 B 157 LEU GLN VAL LEU LEU ILE THR GLY LEU THR VAL LEU PRO SEQRES 5 B 157 GLY ARG GLU GLY ASN ASP ALA VAL ASP ASN ALA GLY GLN SEQRES 6 B 157 GLU TYR GLU LEU LYS SER ILE ASN ILE ASP LEU THR LYS SEQRES 7 B 157 GLY PHE SER THR HIS HIS HIS MET ASN PRO VAL ILE ILE SEQRES 8 B 157 ALA LYS TYR ARG GLN VAL PRO TRP ILE PHE ALA ILE TYR SEQRES 9 B 157 ARG GLY ILE ALA ILE GLU ALA ILE TYR ARG LEU GLU PRO SEQRES 10 B 157 LYS ASP LEU GLU PHE TYR TYR ASP LYS TRP GLU ARG LYS SEQRES 11 B 157 TRP TYR SER ASP GLY HIS LYS ASP ILE ASN ASN PRO LYS SEQRES 12 B 157 ILE PRO VAL LYS TYR VAL MET GLU HIS GLY THR LYS ILE SEQRES 13 B 157 TYR
HET CA A 701 1 HET CA B 725 1 HET CA B 761 1 HET CA A 784 1
HETNAM CA CALCIUM ION
FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *190(H2 O)
HELIX 1 1 ASP A 5 LYS A 25 1 21 HELIX 2 2 ASN A 35 GLY A 47 1 13 HELIX 3 3 ASN A 87 GLN A 96 1 10 HELIX 4 4 GLU A 116 ASP A 134 1 19 HELIX 5 5 VAL A 146 GLY A 153 1 8 HELIX 6 6 PRO B 4 HIS B 26 1 23 HELIX 7 7 ASN B 35 GLY B 47 1 13 HELIX 8 8 ASN B 87 ARG B 95 1 9 HELIX 9 9 GLU B 116 ASP B 134 1 19 HELIX 10 10 VAL B 146 GLY B 153 1 8
SHEET 1 A 6 THR A 49 VAL A 50 0 SHEET 2 A 6 ALA A 59 VAL A 60 -1 O VAL A 60 N THR A 49 SHEET 3 A 6 GLU A 66 ASN A 73 -1 N TYR A 67 O ALA A 59 SHEET 4 A 6 TRP A 99 ARG A 105 1 O ILE A 100 N LYS A 70 SHEET 5 A 6 ALA A 108 LEU A 115 -1 O ALA A 108 N ARG A 105 SHEET 6 A 6 THR A 154 LYS A 155 -1 N THR A 154 O ARG A 114 SHEET 1 B 2 GLY A 79 PHE A 80 0 SHEET 2 B 2 ILE A 144 PRO A 145 -1 O ILE A 144 N PHE A 80 SHEET 1 C 5 THR B 49 VAL B 50 0 SHEET 2 C 5 ALA B 59 VAL B 60 -1 O VAL B 60 N THR B 49 SHEET 3 C 5 GLU B 66 ASN B 73 -1 N TYR B 67 O ALA B 59 SHEET 4 C 5 TRP B 99 ARG B 105 1 O ILE B 100 N LYS B 70 SHEET 5 C 5 ALA B 108 LEU B 115 -1 N ALA B 108 O ARG B 105 SHEET 1 D 2 GLY B 79 PHE B 80 0 SHEET 2 D 2 ILE B 144 PRO B 145 -1 O ILE B 144 N PHE B 80
LINK CA CA A 701 O HOH A 847 1555 1555 2.80 LINK CA CA A 701 OP1 DC D 9 1555 1555 2.56 LINK CA CA A 701 OD2 ASP A 58 1555 1555 3.09 LINK CA CA A 701 OE2 GLU A 68 1555 1555 2.70 LINK CA CA A 701 O LEU A 69 1555 1555 2.39 LINK CA CA A 784 O HOH D 981 1555 1555 2.66 LINK CA CA A 784 O GLY A 56 1555 1555 2.64 LINK CA CA A 784 OD1 ASP A 58 1555 1555 3.06 LINK CA CA A 784 OP1 DC D 9 1555 1555 2.56 LINK CA CA A 784 OE1 GLU A 68 1555 1555 2.97 LINK CA CA A 784 OE2 GLU A 68 1555 1555 3.22 LINK CA CA B 725 OE2 GLU B 68 1555 1555 2.87 LINK CA CA B 725 OD2 ASP B 58 1555 1555 3.31 LINK CA CA B 725 OE1 GLU B 68 1555 1555 2.72 LINK CA CA B 725 O GLU B 55 1555 1555 3.35 LINK CA CA B 725 O GLY B 56 1555 1555 2.35 LINK CA CA B 725 OD1 ASP B 58 1555 1555 2.79 LINK CA CA B 725 O HOH C1028 1555 1555 2.49 LINK CA CA B 725 OP1 DC C 9 1555 1555 2.32 LINK CA CA B 761 OD2 ASP B 58 1555 1555 2.58 LINK CA CA B 761 OE2 GLU B 68 1555 1555 2.39 LINK CA CA B 761 O LEU B 69 1555 1555 2.28 LINK CA CA B 761 O HOH B 762 1555 1555 2.45 LINK CA CA B 761 O HOH C 898 1555 1555 2.79 LINK CA CA B 761 OP1 DC C 9 1555 1555 2.59
SITE 1 AC1 6 ASP A 58 GLU A 68 LEU A 69 LYS A 70 SITE 2 AC1 6 HOH A 847 DC D 9 SITE 1 AC2 7 GLU B 55 GLY B 56 ASP B 58 GLU B 68 SITE 2 AC2 7 CA B 761 DC C 9 HOH C1028 SITE 1 AC3 7 ASP B 58 GLU B 68 LEU B 69 CA B 725 SITE 2 AC3 7 HOH B 762 DC C 9 HOH C 898 SITE 1 AC4 6 GLY A 56 ASP A 58 GLU A 68 DG D 8 SITE 2 AC4 6 DC D 9 HOH D 981
CRYST1 94.043 84.702 45.993 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010633 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011806 0.000000 0.00000
SCALE3 0.000000 0.000000 0.021742 0.00000