1EW1 - Header Asymmetric Unit

HEADER DNA 21-APR-00 1EW1

TITLE RECA PROTEIN-BOUND SINGLE-STRANDED DNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RECA PROTEIN-BOUND SINGLE-STRANDED DNA

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES

KEYWDS DEOXYRIBOSE-BASE STACKING, SINGLE-STRANDED DNA

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR T.NISHINAKA,Y.ITO,S.YOKOYAMA,T.SHIBATA

REVDAT 2 24-FEB-09 1EW1 1 VERSN REVDAT 1 08-MAY-00 1EW1 0

JRNL AUTH T.NISHINAKA,Y.ITO,S.YOKOYAMA,T.SHIBATA JRNL TITL AN EXTENDED DNA STRUCTURE THROUGH DEOXYRIBOSE-BASE JRNL TITL 2 STACKING INDUCED BY RECA PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 94 6623 1997 JRNL REFN ISSN 0027-8424 JRNL PMID 9192615 JRNL DOI 10.1073/PNAS.94.13.6623

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1EW1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-00. REMARK 100 THE RCSB ID CODE IS RCSB010946.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 6.7MM MGCL2, 150MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM D(TPAPCPG); 20MM TRIS- REMARK 210 CL, 6.7MM MGCL2, 150MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING TRANSFERRED NOE REMARK 210 TECHNIQUES. THE ROOT-MEAN-SQUARE DEVIATION OF THE T-A-C REGION REMARK 210 IS 0.30 ANGSTROM. THE FOURTH RESIDUE (G) IS DISORDERED BECAUSE REMARK 210 OF FEW NOE CONSTRAINTS

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 1 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 1 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 1 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 2 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 2 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 2 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 3 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 3 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 3 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 3 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 3 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 4 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 4 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 4 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 4 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 4 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 5 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 5 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 5 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 5 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 5 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 5 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 6 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 6 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 6 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 6 DA A 2 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 6 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 6 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 6 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 7 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 7 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 7 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 7 DC A 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 7 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 7 DG A 4 N7 - C8 - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 8 DT A 1 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 8 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 8 DA A 2 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3REC RELATED DB: PDB REMARK 900 MODEL STRUCTURE BASED ON THIS STRUCTURE

DBREF 1EW1 A 1 4 PDB 1EW1 1EW1 1 4

SEQRES 1 A 4 DT DA DC DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000