10 20 30 40 50 60 70 80 1ETG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN/RNA 28-AUG-96 1ETG
TITLE REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, TITLE 2 NMR, 19 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: REV RESPONSIVE ELEMENT RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: REV PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 5 ORGANISM_TAXID: 11676; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS COMPLEX (RNA/PROTEIN), EXPORT REGULATOR, MRNA SPLICING, KEYWDS 2 TRANSCRIPTION REGULATION, VIRAL PROTEIN/RNA COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 19
AUTHOR J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM,L.E.KAY, AUTHOR 2 A.D.FRANKEL,J.R.WILLAMSON
REVDAT 2 24-FEB-09 1ETG 1 VERSN REVDAT 1 12-MAR-97 1ETG 0
JRNL AUTH J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM, JRNL AUTH 2 L.E.KAY,A.D.FRANKEL,J.R.WILLIAMSON JRNL TITL ALPHA HELIX-RNA MAJOR GROOVE RECOGNITION IN AN JRNL TITL 2 HIV-1 REV PEPTIDE-RRE RNA COMPLEX. JRNL REF SCIENCE V. 273 1547 1996 JRNL REFN ISSN 0036-8075 JRNL PMID 8703216
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.L.BATTISTE,R.TAN,A.D.FRANKEL,J.R.WILLIAMSON REMARK 1 TITL ASSIGNMENT AND MODELING OF THE REV RESPONSE REMARK 1 TITL 2 ELEMENT RNA BOUND TO A REV PEPTIDE USING REMARK 1 TITL 3 13C-HETERONUCLEAR NMR REMARK 1 REF J.BIOMOL.NMR V. 6 375 1995 REMARK 1 REFN ISSN 0925-2738 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.L.BATTISTE,R.TAN,A.D.FRANKEL,J.R.WILLIAMSON REMARK 1 TITL BINDING OF AN HIV REV PEPTIDE TO REV RESPONSIVE REMARK 1 TITL 2 ELEMENT RNA INDUCES FORMATION OF PURINE-PURINE REMARK 1 TITL 3 BASE PAIRS REMARK 1 REF BIOCHEMISTRY V. 33 2741 1994 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH R.TAN,L.CHEN,J.A.BUETTNER,D.HUDSON,A.D.FRANKEL REMARK 1 TITL RNA RECOGNITION BY AN ISOLATED ALPHA HELIX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 73 1031 1993 REMARK 1 REFN ISSN 0092-8674
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : INSIGHT/DISCOVER REMARK 3 AUTHORS : BIOSYM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1ETG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' G A 48 C6 C A 49 0.83 REMARK 500 O2' G A 48 N1 C A 49 1.03 REMARK 500 O2' G A 71 NH2 ARG B 39 1.13 REMARK 500 C2' G A 48 C6 C A 49 1.36 REMARK 500 C2' G A 48 C5 C A 49 1.51 REMARK 500 O2' G A 48 C5 C A 49 1.81 REMARK 500 O2' G A 46 C8 G A 47 1.85 REMARK 500 OP2 G A 70 O2' G A 71 1.90 REMARK 500 O4 U A 45 NH2 ARG B 44 2.02 REMARK 500 O2' G A 48 C2 C A 49 2.06 REMARK 500 NH1 ARG B 39 CD ARG B 43 2.07 REMARK 500 C3' G A 48 C6 C A 49 2.08 REMARK 500 OP2 G A 70 O3' G A 71 2.13 REMARK 500 O2' G A 48 C1' C A 49 2.15 REMARK 500 O2' G A 46 N7 G A 47 2.15 REMARK 500 OP2 G A 70 NH2 ARG B 39 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 1 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 2 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 2 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 3 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 3 ARG B 55 C ARG B 55 OXT 0.136 REMARK 500 4 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 4 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 5 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 5 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 6 GLU B 47 CD GLU B 47 OE2 0.113 REMARK 500 6 ARG B 55 C ARG B 55 OXT 0.136 REMARK 500 7 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 7 ARG B 55 C ARG B 55 OXT 0.136 REMARK 500 8 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 8 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 9 GLU B 47 CD GLU B 47 OE2 0.111 REMARK 500 9 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 10 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 10 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 11 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 11 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 12 GLU B 47 CD GLU B 47 OE2 0.111 REMARK 500 12 ARG B 55 C ARG B 55 OXT 0.134 REMARK 500 13 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 13 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 14 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 14 ARG B 55 C ARG B 55 OXT 0.134 REMARK 500 15 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 15 ARG B 55 C ARG B 55 OXT 0.136 REMARK 500 16 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 16 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 17 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 17 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 18 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 18 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 19 GLU B 47 CD GLU B 47 OE2 0.112 REMARK 500 19 ARG B 55 C ARG B 55 OXT 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 C A 49 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 1 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 C A 78 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 C A 78 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 2 C A 49 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 C A 54 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 C A 54 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 2 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 3 C A 44 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 3 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 3 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 C A 56 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 4 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 4 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 G A 42 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 5 C A 49 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 C A 56 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 5 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 G A 46 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 6 G A 48 C1' - O4' - C4' ANGL. DEV. = -4.5 DEGREES REMARK 500 6 G A 48 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 6 C A 49 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 6 C A 65 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 6 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 7 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 7 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 8 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 9 G A 50 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 9 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 9 C A 69 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 9 C A 69 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 9 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 10 C A 56 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 10 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 11 C A 56 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 11 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 11 G A 70 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 11 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 12 C A 49 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 12 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 12 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 13 G A 46 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 13 U A 72 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 14 C A 56 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 14 C A 69 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 ARG B 48 -73.69 -54.33 REMARK 500 7 ALA B 54 57.15 -164.14 REMARK 500 9 ARG B 46 -79.68 -55.58 REMARK 500 10 ARG B 46 -73.97 -55.73 REMARK 500 13 ASN B 40 -71.78 -71.86 REMARK 500 15 ARG B 39 -70.79 -63.10 REMARK 500 17 ARG B 46 -71.69 -55.81 REMARK 500 17 ARG B 48 -73.94 -52.70 REMARK 500 19 ARG B 44 -70.97 -70.36 REMARK 500 19 ALA B 54 32.68 -81.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 A A 68 0.05 SIDE_CHAIN REMARK 500 8 A A 73 0.05 SIDE_CHAIN REMARK 500 9 U A 45 0.12 SIDE_CHAIN REMARK 500 9 A A 58 0.09 SIDE_CHAIN REMARK 500 9 ARG B 44 0.09 SIDE_CHAIN REMARK 500 14 C A 44 0.07 SIDE_CHAIN REMARK 500 17 G A 71 0.05 SIDE_CHAIN REMARK 500 19 A A 68 0.06 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ETF RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE
DBREF 1ETG B 33 55 UNP P05866 REV_HV1W2 7 29 DBREF 1ETG A 41 79 PDB 1ETG 1ETG 41 79
SEQADV 1ETG ASP B 33 UNP P05866 GLY 7 CONFLICT SEQADV 1ETG ALA B 51 UNP P05866 GLN 25 CONFLICT SEQADV 1ETG ALA B 52 UNP P05866 ILE 26 CONFLICT SEQADV 1ETG ALA B 53 UNP P05866 ARG 27 CONFLICT SEQADV 1ETG ALA B 54 UNP P05866 SER 28 CONFLICT SEQADV 1ETG ARG B 55 UNP P05866 ILE 29 CONFLICT
SEQRES 1 A 34 G G U C U G G G C G C A G SEQRES 2 A 34 C G C A A G C U G A C G G SEQRES 3 A 34 U A C A G G C C SEQRES 1 B 23 ASP THR ARG GLN ALA ARG ARG ASN ARG ARG ARG ARG TRP SEQRES 2 B 23 ARG GLU ARG GLN ARG ALA ALA ALA ALA ARG
HELIX 1 1 ARG B 35 ALA B 53 1 19
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000