10 20 30 40 50 60 70 80 1EN6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 20-MAR-00 1EN6
TITLE CRYSTAL STRUCTURE ANALYSIS OF THE E. COLI MANGANESE TITLE 2 SUPEROXIDE DISMUTASE Q146L MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PDT1-5
KEYWDS PROTON SHUTTLE, Q146L, MUTANT, MANGANESE SUPEROXIDE KEYWDS 2 DISMUTASE, OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.A.EDWARDS,M.M.WHITTAKER,E.N.BAKER,J.W.WHITTAKER, AUTHOR 2 G.B.JAMESON
REVDAT 2 24-FEB-09 1EN6 1 VERSN REVDAT 1 27-JUN-01 1EN6 0
JRNL AUTH R.A.EDWARDS,M.M.WHITTAKER,J.W.WHITTAKER,E.N.BAKER, JRNL AUTH 2 G.B.JAMESON JRNL TITL OUTER SPHERE MUTATIONS PERTURB METAL REACTIVITY IN JRNL TITL 2 MANGANESE SUPEROXIDE DISMUTASE. JRNL REF BIOCHEMISTRY V. 40 15 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11141052 JRNL DOI 10.1021/BI0018943
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.A.EDWARDS,M.M.WHITTAKER,J.W.WHITTAKER,E.N.BAKER, REMARK 1 AUTH 2 G.B.JAMESON REMARK 1 TITL REMOVING A HYDROGEN BOND IN THE DIMER INTERFACE OF REMARK 1 TITL 2 ESCHERICHIA COLI MANGANESE SUPEROXIDE DISMUTASE REMARK 1 TITL 3 ALTERS STRUCTURE AND REACTIVITY. REMARK 1 REF BIOCHEMISTRY V. 40 4622 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI002403H REMARK 1 REFERENCE 2 REMARK 1 AUTH R.A.EDWARDS,H.M.BAKER,M.M.WHITTAKER,J.W.WHITTAKER, REMARK 1 AUTH 2 G.B.JAMESON,E.N.BAKER REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI MANGANESE REMARK 1 TITL 2 SUPEROXIDE DISMUTASE AT 2.1 A RESOLUTION REMARK 1 REF J.BIOL.INORG.CHEM. V. 3 161 1998 REMARK 1 REFN ISSN 0949-8257 REMARK 1 DOI 10.1007/S007750050217
REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 66366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3261 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.60500 REMARK 3 B22 (A**2) : -1.92800 REMARK 3 B33 (A**2) : 6.53400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.333 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.085 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.075 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.154 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1EN6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-00. REMARK 100 THE RCSB ID CODE IS RCSB010742.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200B REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66399 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 6000, 0.05 M BICINE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.86100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.86100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.84900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.64850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.84900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.64850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.86100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.84900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.64850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.86100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.84900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.64850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 89 136.06 -176.29 REMARK 500 ASP A 136 -3.05 71.25 REMARK 500 ASN A 145 -121.52 42.30 REMARK 500 TYR A 173 -5.01 -142.21 REMARK 500 GLN A 178 -128.09 48.89 REMARK 500 LYS A 204 -12.28 73.20 REMARK 500 LYS B 29 -64.07 -109.39 REMARK 500 LEU B 45 66.69 -119.27 REMARK 500 LYS B 89 136.28 -178.96 REMARK 500 ASN B 145 -118.85 45.31 REMARK 500 TYR B 173 -2.53 -143.90 REMARK 500 GLN B 178 -129.07 47.37 REMARK 500 LYS C 89 138.15 -178.80 REMARK 500 GLN C 95 -169.44 -165.61 REMARK 500 ASN C 145 -119.43 43.55 REMARK 500 GLN C 178 -127.47 50.40 REMARK 500 LYS D 29 -64.33 -109.90 REMARK 500 LYS D 89 136.07 172.44 REMARK 500 GLN D 95 -169.85 -177.81 REMARK 500 ASN D 145 -119.99 42.33 REMARK 500 TYR D 173 -3.68 -145.86 REMARK 500 GLN D 178 -129.53 51.52 REMARK 500 LYS D 204 -2.33 63.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 600 O REMARK 620 2 HIS A 26 NE2 172.0 REMARK 620 3 HIS A 171 NE2 90.6 93.0 REMARK 620 4 HIS A 81 NE2 88.1 94.6 133.2 REMARK 620 5 ASP A 167 OD2 83.3 88.7 115.2 111.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 591 O REMARK 620 2 HIS B 26 NE2 173.1 REMARK 620 3 HIS B 171 NE2 92.6 92.4 REMARK 620 4 HIS B 81 NE2 90.5 89.8 131.3 REMARK 620 5 ASP B 167 OD2 84.5 89.0 117.0 111.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 586 O REMARK 620 2 ASP C 167 OD2 86.1 REMARK 620 3 HIS C 171 NE2 94.8 113.9 REMARK 620 4 HIS C 81 NE2 89.9 108.8 137.2 REMARK 620 5 HIS C 26 NE2 173.6 87.7 88.8 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 577 O REMARK 620 2 HIS D 171 NE2 94.0 REMARK 620 3 ASP D 167 OD2 83.5 114.0 REMARK 620 4 HIS D 26 NE2 170.6 89.8 87.1 REMARK 620 5 HIS D 81 NE2 90.7 133.2 112.8 93.0 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 501 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C 503 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 504
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VEW RELATED DB: PDB REMARK 900 NATIVE CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1MMM RELATED DB: PDB REMARK 900 IRON-SUBSTITUTED NATIVE CRYSTAL STRUCTURE REMARK 900 RELATED ID: 1EN4 RELATED DB: PDB REMARK 900 E. COLI MANGANESE SUPEROXIDE DISMUTASE Q146H MUTANT CRYSTAL REMARK 900 STRUCTURE REMARK 900 RELATED ID: 1EN5 RELATED DB: PDB REMARK 900 E. COLI MANGANESE SUPEROXIDE DISMUTASE Y34F MUTANT CRYSTAL REMARK 900 STRUCTURE
DBREF 1EN6 A 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1EN6 B 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1EN6 C 1 205 UNP P00448 SODM_ECOLI 1 205 DBREF 1EN6 D 1 205 UNP P00448 SODM_ECOLI 1 205
SEQADV 1EN6 LEU A 146 UNP P00448 GLN 146 ENGINEERED SEQADV 1EN6 LEU B 146 UNP P00448 GLN 146 ENGINEERED SEQADV 1EN6 LEU C 146 UNP P00448 GLN 146 ENGINEERED SEQADV 1EN6 LEU D 146 UNP P00448 GLN 146 ENGINEERED
SEQRES 1 A 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 A 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 A 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 A 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 A 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 A 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 A 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 A 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 A 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 A 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 A 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 A 205 ALA ASN LEU ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 A 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 A 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 A 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 A 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 B 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 B 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 B 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 B 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 B 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 B 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 B 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 B 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 B 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 B 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 B 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 B 205 ALA ASN LEU ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 B 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 B 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 B 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 B 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 C 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 C 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 C 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 C 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 C 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 C 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 C 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 C 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 C 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 C 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 C 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 C 205 ALA ASN LEU ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 C 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 C 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 C 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 C 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS SEQRES 1 D 205 SER TYR THR LEU PRO SER LEU PRO TYR ALA TYR ASP ALA SEQRES 2 D 205 LEU GLU PRO HIS PHE ASP LYS GLN THR MET GLU ILE HIS SEQRES 3 D 205 HIS THR LYS HIS HIS GLN THR TYR VAL ASN ASN ALA ASN SEQRES 4 D 205 ALA ALA LEU GLU SER LEU PRO GLU PHE ALA ASN LEU PRO SEQRES 5 D 205 VAL GLU GLU LEU ILE THR LYS LEU ASP GLN LEU PRO ALA SEQRES 6 D 205 ASP LYS LYS THR VAL LEU ARG ASN ASN ALA GLY GLY HIS SEQRES 7 D 205 ALA ASN HIS SER LEU PHE TRP LYS GLY LEU LYS LYS GLY SEQRES 8 D 205 THR THR LEU GLN GLY ASP LEU LYS ALA ALA ILE GLU ARG SEQRES 9 D 205 ASP PHE GLY SER VAL ASP ASN PHE LYS ALA GLU PHE GLU SEQRES 10 D 205 LYS ALA ALA ALA SER ARG PHE GLY SER GLY TRP ALA TRP SEQRES 11 D 205 LEU VAL LEU LYS GLY ASP LYS LEU ALA VAL VAL SER THR SEQRES 12 D 205 ALA ASN LEU ASP SER PRO LEU MET GLY GLU ALA ILE SER SEQRES 13 D 205 GLY ALA SER GLY PHE PRO ILE MET GLY LEU ASP VAL TRP SEQRES 14 D 205 GLU HIS ALA TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO SEQRES 15 D 205 ASP TYR ILE LYS GLU PHE TRP ASN VAL VAL ASN TRP ASP SEQRES 16 D 205 GLU ALA ALA ALA ARG PHE ALA ALA LYS LYS
HET MN A 501 1 HET MN B 502 1 HET MN C 503 1 HET MN D 504 1
HETNAM MN MANGANESE (II) ION
FORMUL 5 MN 4(MN 2+) FORMUL 9 HOH *344(H2 O)
HELIX 1 1 ASP A 19 LYS A 29 1 11 HELIX 2 2 LYS A 29 GLU A 43 1 15 HELIX 3 3 LEU A 45 ASN A 50 1 6 HELIX 4 4 PRO A 52 ILE A 57 1 6 HELIX 5 5 THR A 58 LEU A 63 5 6 HELIX 6 6 LYS A 67 GLY A 87 1 21 HELIX 7 7 GLN A 95 GLY A 107 1 13 HELIX 8 8 SER A 108 ARG A 123 1 16 HELIX 9 9 SER A 148 MET A 151 5 4 HELIX 10 10 GLY A 152 GLY A 157 1 6 HELIX 11 11 TRP A 169 ALA A 172 5 4 HELIX 12 12 TYR A 173 GLN A 178 1 6 HELIX 13 13 ARG A 180 TRP A 189 1 10 HELIX 14 14 ASN A 193 LYS A 204 1 12 HELIX 15 15 ASP B 19 LYS B 29 1 11 HELIX 16 16 LYS B 29 GLU B 43 1 15 HELIX 17 17 LEU B 45 ASN B 50 1 6 HELIX 18 18 PRO B 52 ILE B 57 1 6 HELIX 19 19 THR B 58 LEU B 63 5 6 HELIX 20 20 LYS B 67 GLY B 87 1 21 HELIX 21 21 GLN B 95 GLY B 107 1 13 HELIX 22 22 SER B 108 ARG B 123 1 16 HELIX 23 23 SER B 148 MET B 151 5 4 HELIX 24 24 GLY B 152 GLY B 157 1 6 HELIX 25 25 TRP B 169 ALA B 172 5 4 HELIX 26 26 TYR B 173 GLN B 178 1 6 HELIX 27 27 ARG B 180 VAL B 192 1 13 HELIX 28 28 ASN B 193 LYS B 204 1 12 HELIX 29 29 ASP C 19 LYS C 29 1 11 HELIX 30 30 LYS C 29 GLU C 43 1 15 HELIX 31 31 LEU C 45 ASN C 50 1 6 HELIX 32 32 PRO C 52 ILE C 57 1 6 HELIX 33 33 THR C 58 LEU C 63 5 6 HELIX 34 34 PRO C 64 GLY C 87 1 24 HELIX 35 35 GLN C 95 GLY C 107 1 13 HELIX 36 36 SER C 108 ARG C 123 1 16 HELIX 37 37 SER C 148 MET C 151 5 4 HELIX 38 38 GLY C 152 GLY C 157 1 6 HELIX 39 39 TRP C 169 ALA C 172 5 4 HELIX 40 40 TYR C 173 GLN C 178 1 6 HELIX 41 41 ARG C 180 VAL C 192 1 13 HELIX 42 42 ASN C 193 LYS C 204 1 12 HELIX 43 43 ASP D 19 LYS D 29 1 11 HELIX 44 44 LYS D 29 GLU D 43 1 15 HELIX 45 45 GLU D 47 LEU D 51 5 5 HELIX 46 46 PRO D 52 ILE D 57 1 6 HELIX 47 47 THR D 58 LEU D 63 5 6 HELIX 48 48 PRO D 64 GLY D 87 1 24 HELIX 49 49 GLN D 95 GLY D 107 1 13 HELIX 50 50 SER D 108 ARG D 123 1 16 HELIX 51 51 SER D 148 MET D 151 5 4 HELIX 52 52 GLY D 152 GLY D 157 1 6 HELIX 53 53 TRP D 169 ALA D 172 5 4 HELIX 54 54 TYR D 173 GLN D 178 1 6 HELIX 55 55 ARG D 180 VAL D 192 1 13 HELIX 56 56 ASN D 193 LYS D 204 1 12
SHEET 1 A 3 LYS A 137 ALA A 144 0 SHEET 2 A 3 GLY A 127 LYS A 134 -1 O TRP A 128 N THR A 143 SHEET 3 A 3 PHE A 161 ASP A 167 -1 N PHE A 161 O LEU A 133 SHEET 1 B 3 LYS B 137 ALA B 144 0 SHEET 2 B 3 GLY B 127 LYS B 134 -1 O TRP B 128 N THR B 143 SHEET 3 B 3 PHE B 161 ASP B 167 -1 N PHE B 161 O LEU B 133 SHEET 1 C 3 LYS C 137 ALA C 144 0 SHEET 2 C 3 GLY C 127 LYS C 134 -1 O TRP C 128 N THR C 143 SHEET 3 C 3 PHE C 161 ASP C 167 -1 N PHE C 161 O LEU C 133 SHEET 1 D 3 LYS D 137 ALA D 144 0 SHEET 2 D 3 GLY D 127 LYS D 134 -1 O TRP D 128 N THR D 143 SHEET 3 D 3 PHE D 161 ASP D 167 -1 N PHE D 161 O LEU D 133
LINK MN MN A 501 O HOH A 600 1555 1555 2.27 LINK MN MN B 502 O HOH B 591 1555 1555 2.31 LINK MN MN C 503 O HOH C 586 1555 1555 2.30 LINK MN MN D 504 O HOH D 577 1555 1555 2.31 LINK MN MN A 501 NE2 HIS A 26 1555 1555 2.23 LINK MN MN A 501 NE2 HIS A 171 1555 1555 2.24 LINK MN MN A 501 NE2 HIS A 81 1555 1555 2.24 LINK MN MN A 501 OD2 ASP A 167 1555 1555 2.00 LINK MN MN B 502 NE2 HIS B 26 1555 1555 2.25 LINK MN MN B 502 NE2 HIS B 171 1555 1555 2.24 LINK MN MN B 502 NE2 HIS B 81 1555 1555 2.22 LINK MN MN B 502 OD2 ASP B 167 1555 1555 1.95 LINK MN MN C 503 OD2 ASP C 167 1555 1555 1.99 LINK MN MN C 503 NE2 HIS C 171 1555 1555 2.17 LINK MN MN C 503 NE2 HIS C 81 1555 1555 2.24 LINK MN MN C 503 NE2 HIS C 26 1555 1555 2.23 LINK MN MN D 504 NE2 HIS D 171 1555 1555 2.17 LINK MN MN D 504 OD2 ASP D 167 1555 1555 2.02 LINK MN MN D 504 NE2 HIS D 26 1555 1555 2.26 LINK MN MN D 504 NE2 HIS D 81 1555 1555 2.22
CISPEP 1 GLU A 15 PRO A 16 0 0.26 CISPEP 2 GLU B 15 PRO B 16 0 0.24 CISPEP 3 GLU C 15 PRO C 16 0 -0.02 CISPEP 4 GLU D 15 PRO D 16 0 0.24
SITE 1 AC1 5 HIS A 26 HIS A 81 ASP A 167 HIS A 171 SITE 2 AC1 5 HOH A 600 SITE 1 AC2 5 HIS B 26 HIS B 81 ASP B 167 HIS B 171 SITE 2 AC2 5 HOH B 591 SITE 1 AC3 5 HIS C 26 HIS C 81 ASP C 167 HIS C 171 SITE 2 AC3 5 HOH C 586 SITE 1 AC4 5 HIS D 26 HIS D 81 ASP D 167 HIS D 171 SITE 2 AC4 5 HOH D 577
CRYST1 101.698 109.297 181.722 90.00 90.00 90.00 C 2 2 21 32
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009833 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009149 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005503 0.00000