10 20 30 40 50 60 70 80 1EMN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MATRIX PROTEIN 05-AUG-96 1EMN
TITLE NMR STUDY OF A PAIR OF FIBRILLIN CA2+ BINDING EPIDERMAL TITLE 2 GROWTH FACTOR-LIKE DOMAINS, MINIMIZED AVERAGE STRUCTURE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRILLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CA2+ BINDING EPIDERMAL GROWTH FACTOR-LIKE DOMAIN, COMPND 5 RESIDUES 2124 - 2205; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: SKIN; SOURCE 6 TISSUE: SKIN (DERMIS); SOURCE 7 CELL: FIBROBLAST; SOURCE 8 GENE: FBN1; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: NM554 (HIS TAG); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PQE30 (QIAGEN); SOURCE 13 EXPRESSION_SYSTEM_GENE: FBN1
KEYWDS EXTRACELLULAR MATRIX, CALCIUM-BINDING, GLYCOPROTEIN, REPEAT, KEYWDS 2 SIGNAL, MULTIGENE FAMILY, DISEASE MUTATION, EGF-LIKE DOMAIN, KEYWDS 3 HUMAN FIBRILLIN-1 FRAGMENT, MATRIX PROTEIN
EXPDTA SOLUTION NMR
AUTHOR A.K.DOWNING,I.D.CAMPBELL,P.A.HANDFORD
REVDAT 2 24-FEB-09 1EMN 1 VERSN REVDAT 1 23-DEC-96 1EMN 0
JRNL AUTH A.K.DOWNING,V.KNOTT,J.M.WERNER,C.M.CARDY, JRNL AUTH 2 I.D.CAMPBELL,P.A.HANDFORD JRNL TITL SOLUTION STRUCTURE OF A PAIR OF CALCIUM-BINDING JRNL TITL 2 EPIDERMAL GROWTH FACTOR-LIKE DOMAINS: IMPLICATIONS JRNL TITL 3 FOR THE MARFAN SYNDROME AND OTHER GENETIC JRNL TITL 4 DISORDERS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 85 597 1996 JRNL REFN ISSN 0092-8674 JRNL PMID 8653794 JRNL DOI 10.1016/S0092-8674(00)81259-3
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.KNOTT,A.K.DOWNING,C.M.CARDY,P.HANDFORD REMARK 1 TITL CALCIUM BINDING PROPERTIES OF AN EPIDERMAL GROWTH REMARK 1 TITL 2 FACTOR-LIKE DOMAIN PAIR FROM HUMAN FIBRILLIN-1 REMARK 1 REF J.MOL.BIOL. V. 255 22 1996 REMARK 1 REFN ISSN 0022-2836
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1EMN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H-NOESY, COSY, TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, OMEGA REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : F(NOE) < 165 KJ MOL-1 TORSION REMARK 210 ANGLE CONSTRAINTS VIOLATED BY REMARK 210 > 3 DEGREES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A2125 38.86 95.97 REMARK 500 VAL A2126 107.61 -51.61 REMARK 500 ASP A2127 106.68 -43.92 REMARK 500 MET A2128 121.94 -35.17 REMARK 500 GLU A2130 -41.87 79.52 REMARK 500 VAL A2136 -105.44 -114.40 REMARK 500 CYS A2137 -87.75 -63.31 REMARK 500 LYS A2138 93.13 76.43 REMARK 500 HIS A2139 54.25 72.49 REMARK 500 ASP A2146 -80.39 -50.29 REMARK 500 SER A2148 -161.40 -169.39 REMARK 500 PRO A2154 -168.03 -63.50 REMARK 500 ALA A2160 56.65 -100.36 REMARK 500 ASN A2162 -53.91 166.79 REMARK 500 VAL A2172 -73.52 -90.27 REMARK 500 ASN A2174 99.83 -38.87 REMARK 500 ASN A2178 -36.46 -154.31 REMARK 500 CYS A2192 -176.37 -49.16 REMARK 500 GLU A2194 128.20 -19.85 REMARK 500 PHE A2196 -164.45 -119.79 REMARK 500 PRO A2198 -160.04 -66.78 REMARK 500 PRO A2200 -80.22 -62.45 REMARK 500 MET A2202 -76.02 -118.74 REMARK 500 THR A2203 -166.86 -174.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A2150 0.27 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2224 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2127 OD1 REMARK 620 2 MET A2128 O 80.6 REMARK 620 3 GLU A2130 OE1 137.3 69.0 REMARK 620 4 GLU A2130 OE2 93.3 69.3 48.7 REMARK 620 5 ASP A2127 OD2 39.9 117.9 164.1 118.3 REMARK 620 6 ASN A2144 OD1 99.9 101.3 114.6 162.5 79.1 REMARK 620 7 ASN A2144 ND2 131.3 72.3 67.0 112.9 128.0 49.6 REMARK 620 8 THR A2145 O 94.8 168.5 108.9 100.6 61.2 89.8 117.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2225 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A2187 O REMARK 620 2 ASP A2166 OD2 101.3 REMARK 620 3 THR A2167 O 160.6 91.5 REMARK 620 4 ASN A2183 OD1 122.0 118.1 61.9 REMARK 620 5 GLU A2169 OE1 92.6 110.6 69.1 109.2 REMARK 620 6 GLU A2169 OE2 53.9 87.9 112.8 152.8 49.2 REMARK 620 7 VAL A2184 O 88.8 53.0 110.6 83.8 163.4 121.0 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CA1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITE FOR EGF-LIKE DOMAIN 32. REMARK 800 SITE_IDENTIFIER: CA2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CALCIUM BINDING SITE FOR EGF-LIKE DOMAIN 33. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2224 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2225
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EMO RELATED DB: PDB
DBREF 1EMN A 2124 2205 UNP P35555 FBN1_HUMAN 2124 2205
SEQADV 1EMN ILE A 2158 UNP P35555 THR 2158 CONFLICT
SEQRES 1 A 82 SER ALA VAL ASP MET ASP GLU CYS LYS GLU PRO ASP VAL SEQRES 2 A 82 CYS LYS HIS GLY GLN CYS ILE ASN THR ASP GLY SER TYR SEQRES 3 A 82 ARG CYS GLU CYS PRO PHE GLY TYR ILE LEU ALA GLY ASN SEQRES 4 A 82 GLU CYS VAL ASP THR ASP GLU CYS SER VAL GLY ASN PRO SEQRES 5 A 82 CYS GLY ASN GLY THR CYS LYS ASN VAL ILE GLY GLY PHE SEQRES 6 A 82 GLU CYS THR CYS GLU GLU GLY PHE GLU PRO GLY PRO MET SEQRES 7 A 82 MET THR CYS GLU
HET CA A2224 1 HET CA A2225 1
HETNAM CA CALCIUM ION
FORMUL 2 CA 2(CA 2+)
HELIX 1 H1 GLU A 2169 SER A 2171 5 3
SHEET 1 S1 2 GLN A2141 CYS A2142 0 SHEET 2 S1 2 CYS A2151 GLU A2152 -1 N GLU A2152 O GLN A2141 SHEET 1 S2 2 TYR A2157 ALA A2160 0 SHEET 2 S2 2 GLU A2163 ASP A2166 -1 O VAL A2165 N ILE A2158 SHEET 1 S3 2 CYS A2181 ASN A2183 0 SHEET 2 S3 2 PHE A2188 CYS A2190 -1 O GLU A2189 N LYS A2182
SSBOND 1 CYS A 2131 CYS A 2142 1555 1555 2.02 SSBOND 2 CYS A 2137 CYS A 2151 1555 1555 2.02 SSBOND 3 CYS A 2153 CYS A 2164 1555 1555 2.02 SSBOND 4 CYS A 2170 CYS A 2181 1555 1555 2.02 SSBOND 5 CYS A 2176 CYS A 2190 1555 1555 2.02 SSBOND 6 CYS A 2192 CYS A 2204 1555 1555 2.02
LINK CA CA A2224 OD1 ASP A2127 1555 1555 2.47 LINK CA CA A2224 O MET A2128 1555 1555 2.65 LINK CA CA A2224 OE1 GLU A2130 1555 1555 2.61 LINK CA CA A2224 OE2 GLU A2130 1555 1555 2.61 LINK CA CA A2224 OD2 ASP A2127 1555 1555 3.36 LINK CA CA A2224 OD1 ASN A2144 1555 1555 2.64 LINK CA CA A2224 ND2 ASN A2144 1555 1555 2.56 LINK CA CA A2224 O THR A2145 1555 1555 2.63 LINK CA CA A2225 O GLY A2187 1555 1555 2.44 LINK CA CA A2225 OD2 ASP A2166 1555 1555 2.56 LINK CA CA A2225 O THR A2167 1555 1555 2.46 LINK CA CA A2225 OD1 ASN A2183 1555 1555 2.62 LINK CA CA A2225 OE1 GLU A2169 1555 1555 2.54 LINK CA CA A2225 OE2 GLU A2169 1555 1555 2.62 LINK CA CA A2225 O VAL A2184 1555 1555 2.61
SITE 1 CA1 6 ASP A2127 ASP A2129 GLU A2130 ASN A2144 SITE 2 CA1 6 TYR A2149 CA A2224 SITE 1 CA2 6 ASP A2166 ASP A2168 GLU A2169 ASN A2183 SITE 2 CA2 6 PHE A2188 CA A2225 SITE 1 AC1 7 ASP A2127 MET A2128 GLU A2130 ASN A2144 SITE 2 AC1 7 THR A2145 ASP A2146 SER A2148 SITE 1 AC2 6 ASP A2166 THR A2167 GLU A2169 ASN A2183 SITE 2 AC2 6 VAL A2184 GLY A2187
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000