10 20 30 40 50 60 70 80 1EH2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CALCIUM BINDING 10-JUL-98 1EH2
TITLE STRUCTURE OF THE SECOND EPS15 HOMOLOGY DOMAIN OF HUMAN TITLE 2 EPS15, NMR, 20 STRUCTURES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPS15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EPS15 HOMOLOGY (EH) DOMAIN 2, RESIDUES 121-218; COMPND 5 SYNONYM: EH2, EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE COMPND 6 15; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: THIS DOMAIN CONTAINS A CALCIUM BINDING SITE
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPS15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 (DE3) PLYSS AND BL21 (DE3) SOURCE 9 PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSETA
KEYWDS CALCIUM BINDING, SIGNALING DOMAIN, NPF BINDING, EF-HAND, EH KEYWDS 2 DOMAIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.DE BEER,R.E.CARTER,K.E.LOBEL-RICE,A.SORKIN,M.OVERDUIN
REVDAT 3 24-FEB-09 1EH2 1 VERSN REVDAT 2 01-APR-03 1EH2 1 JRNL REVDAT 1 22-JUL-99 1EH2 0
JRNL AUTH T.DE BEER,R.E.CARTER,K.E.LOBEL-RICE,A.SORKIN, JRNL AUTH 2 M.OVERDUIN JRNL TITL STRUCTURE AND ASN-PRO-PHE BINDING POCKET OF THE JRNL TITL 2 EPS15 HOMOLOGY DOMAIN. JRNL REF SCIENCE V. 281 1357 1998 JRNL REFN ISSN 0036-8075 JRNL PMID 9721102 JRNL DOI 10.1126/SCIENCE.281.5381.1357
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE R-6 SUMMATION METHOD WAS USED REMARK 3 WITHIN A SIMULATED ANNEALING PROTOCOL.
REMARK 4 REMARK 4 1EH2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 MILLIMOLAR REMARK 210 PRESSURE : ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : H2O AND D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-FILTERED TOCSY AND NOESY, REMARK 210 15N-1H HSQC-NOESY-HSQC, 1H-15N REMARK 210 HMQC-J, 3D AND 4D 13C/15N- REMARK 210 FILTERED NOESY'S, HNCO, CCC- REMARK 210 TOCSY-NNH, HCC-TOCSY-NNH, REMARK 210 HBCBCACONNH, HNCACB, HCCH- REMARK 210 TOCSY, HBCBCGCDHD, HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 LOWEST NOE ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NMR EXPERIMENTS WERE PERFORMED ON UNLABELED, 15N- REMARK 210 LABELED AND 13C,15N-LABELED EH2 PROTEIN
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 ARG A 2 REMARK 465 TRP A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LYS A 101 REMARK 465 THR A 102 REMARK 465 TRP A 103 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 ILE A 106
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 25 89.81 82.69 REMARK 500 1 LYS A 83 -23.70 177.95 REMARK 500 1 LEU A 90 107.10 -55.71 REMARK 500 2 SER A 25 87.00 79.52 REMARK 500 2 LYS A 83 -25.53 177.41 REMARK 500 2 PRO A 85 -171.69 -69.59 REMARK 500 3 SER A 25 92.21 83.16 REMARK 500 3 ASN A 28 25.09 46.04 REMARK 500 3 LYS A 83 -28.76 178.44 REMARK 500 3 PRO A 85 -165.47 -75.38 REMARK 500 3 SER A 89 29.00 -177.74 REMARK 500 3 LEU A 90 120.49 57.65 REMARK 500 3 SER A 98 -32.45 80.70 REMARK 500 4 SER A 25 86.58 82.63 REMARK 500 4 ILE A 59 -29.87 -37.40 REMARK 500 4 LYS A 83 -37.87 177.94 REMARK 500 4 PRO A 85 -169.64 -74.77 REMARK 500 4 SER A 89 23.74 -161.14 REMARK 500 4 LEU A 90 118.48 61.70 REMARK 500 5 SER A 25 83.55 80.29 REMARK 500 5 LYS A 83 -28.33 178.90 REMARK 500 5 SER A 89 23.88 -165.89 REMARK 500 5 LEU A 90 123.17 62.09 REMARK 500 5 SER A 98 -45.20 76.47 REMARK 500 6 SER A 25 97.59 80.35 REMARK 500 6 LYS A 83 -89.38 -88.04 REMARK 500 6 PRO A 85 -179.19 -66.81 REMARK 500 7 SER A 25 93.56 79.70 REMARK 500 7 LYS A 83 -26.54 177.69 REMARK 500 7 PRO A 85 -167.44 -71.32 REMARK 500 7 LEU A 90 107.20 -56.88 REMARK 500 8 SER A 25 87.59 81.93 REMARK 500 8 ILE A 59 -30.98 -34.57 REMARK 500 8 VAL A 77 -62.74 -91.39 REMARK 500 8 LYS A 83 -23.34 177.92 REMARK 500 8 LEU A 90 106.49 -50.05 REMARK 500 8 LEU A 94 -11.34 -141.52 REMARK 500 8 SER A 98 -38.68 -143.18 REMARK 500 9 ALA A 8 -26.87 -39.39 REMARK 500 9 SER A 25 93.77 83.14 REMARK 500 9 LYS A 83 -69.46 -146.24 REMARK 500 9 LEU A 90 106.38 -51.74 REMARK 500 9 LEU A 94 34.36 -158.19 REMARK 500 9 SER A 98 -52.01 75.09 REMARK 500 10 SER A 25 95.07 82.17 REMARK 500 10 LYS A 83 79.51 176.89 REMARK 500 10 GLU A 84 116.36 -166.71 REMARK 500 10 LEU A 90 107.81 -54.66 REMARK 500 10 SER A 98 -52.74 73.99 REMARK 500 11 SER A 25 96.33 80.88 REMARK 500 11 ILE A 59 -30.29 -39.28 REMARK 500 11 LYS A 83 -34.88 177.71 REMARK 500 11 PRO A 85 -162.01 -71.66 REMARK 500 11 SER A 89 23.19 -168.43 REMARK 500 11 LEU A 90 119.35 53.81 REMARK 500 11 SER A 98 -55.18 72.43 REMARK 500 12 SER A 25 90.53 80.17 REMARK 500 12 LYS A 83 -24.36 177.87 REMARK 500 12 LEU A 90 108.26 -57.07 REMARK 500 13 SER A 25 91.10 81.71 REMARK 500 13 LYS A 83 -73.33 -96.07 REMARK 500 13 GLU A 84 -175.97 -171.30 REMARK 500 13 SER A 98 -39.76 -134.49 REMARK 500 14 SER A 25 89.08 86.05 REMARK 500 14 VAL A 77 -61.92 -91.66 REMARK 500 14 LYS A 83 -26.35 179.11 REMARK 500 14 LEU A 90 106.71 -57.12 REMARK 500 15 SER A 25 87.52 81.26 REMARK 500 15 LYS A 83 -18.01 176.41 REMARK 500 15 PRO A 85 -167.27 -73.17 REMARK 500 16 SER A 25 99.41 85.60 REMARK 500 16 ASN A 28 17.50 56.90 REMARK 500 16 ILE A 59 -31.14 -35.20 REMARK 500 16 LYS A 83 -91.61 -160.05 REMARK 500 16 PRO A 85 -162.39 -75.98 REMARK 500 16 SER A 89 23.54 -165.95 REMARK 500 16 LEU A 90 116.81 54.89 REMARK 500 17 SER A 25 98.21 84.48 REMARK 500 17 LYS A 83 -20.12 174.49 REMARK 500 17 LEU A 90 107.14 -54.96 REMARK 500 17 PRO A 97 62.84 -69.04 REMARK 500 17 SER A 98 -56.58 -140.56 REMARK 500 18 SER A 25 96.90 80.30 REMARK 500 18 LYS A 44 15.36 56.26 REMARK 500 18 ILE A 59 -31.73 -39.95 REMARK 500 18 LYS A 83 -87.68 -88.86 REMARK 500 18 LEU A 90 108.15 -59.16 REMARK 500 18 PRO A 97 -172.98 -68.56 REMARK 500 18 SER A 98 -49.86 75.24 REMARK 500 19 SER A 25 87.94 83.89 REMARK 500 19 LYS A 83 -28.17 179.13 REMARK 500 19 LEU A 90 108.53 -46.54 REMARK 500 19 LEU A 94 -3.33 -141.75 REMARK 500 19 SER A 98 -2.52 73.18 REMARK 500 20 SER A 25 89.90 77.23 REMARK 500 20 LYS A 83 -26.54 178.10 REMARK 500 20 LEU A 90 104.99 -44.48 REMARK 500 20 LEU A 94 13.03 -151.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 52 0.32 SIDE_CHAIN REMARK 500 1 ARG A 67 0.27 SIDE_CHAIN REMARK 500 1 ARG A 100 0.26 SIDE_CHAIN REMARK 500 2 ARG A 52 0.18 SIDE_CHAIN REMARK 500 2 ARG A 67 0.30 SIDE_CHAIN REMARK 500 2 ARG A 100 0.31 SIDE_CHAIN REMARK 500 3 ARG A 52 0.21 SIDE_CHAIN REMARK 500 3 ARG A 67 0.31 SIDE_CHAIN REMARK 500 3 ARG A 100 0.11 SIDE_CHAIN REMARK 500 4 ARG A 52 0.21 SIDE_CHAIN REMARK 500 4 ARG A 67 0.21 SIDE_CHAIN REMARK 500 4 ARG A 100 0.32 SIDE_CHAIN REMARK 500 5 ARG A 52 0.12 SIDE_CHAIN REMARK 500 5 ARG A 67 0.30 SIDE_CHAIN REMARK 500 5 ARG A 100 0.11 SIDE_CHAIN REMARK 500 6 ARG A 52 0.28 SIDE_CHAIN REMARK 500 6 ARG A 67 0.26 SIDE_CHAIN REMARK 500 6 ARG A 100 0.20 SIDE_CHAIN REMARK 500 7 ARG A 52 0.31 SIDE_CHAIN REMARK 500 7 ARG A 67 0.29 SIDE_CHAIN REMARK 500 7 ARG A 100 0.22 SIDE_CHAIN REMARK 500 8 ARG A 52 0.30 SIDE_CHAIN REMARK 500 8 ARG A 67 0.30 SIDE_CHAIN REMARK 500 8 ARG A 100 0.18 SIDE_CHAIN REMARK 500 9 ARG A 52 0.21 SIDE_CHAIN REMARK 500 9 ARG A 67 0.30 SIDE_CHAIN REMARK 500 9 ARG A 100 0.22 SIDE_CHAIN REMARK 500 10 ARG A 52 0.32 SIDE_CHAIN REMARK 500 10 ARG A 67 0.19 SIDE_CHAIN REMARK 500 10 ARG A 100 0.28 SIDE_CHAIN REMARK 500 11 ARG A 52 0.20 SIDE_CHAIN REMARK 500 11 ARG A 67 0.15 SIDE_CHAIN REMARK 500 11 ARG A 100 0.19 SIDE_CHAIN REMARK 500 12 ARG A 52 0.29 SIDE_CHAIN REMARK 500 12 ARG A 67 0.31 SIDE_CHAIN REMARK 500 12 ARG A 100 0.30 SIDE_CHAIN REMARK 500 13 ARG A 52 0.29 SIDE_CHAIN REMARK 500 13 ARG A 67 0.15 SIDE_CHAIN REMARK 500 13 ARG A 100 0.28 SIDE_CHAIN REMARK 500 14 ARG A 52 0.25 SIDE_CHAIN REMARK 500 14 ARG A 67 0.16 SIDE_CHAIN REMARK 500 14 ARG A 100 0.31 SIDE_CHAIN REMARK 500 15 ARG A 52 0.10 SIDE_CHAIN REMARK 500 15 ARG A 67 0.18 SIDE_CHAIN REMARK 500 15 ARG A 100 0.19 SIDE_CHAIN REMARK 500 16 ARG A 52 0.31 SIDE_CHAIN REMARK 500 16 ARG A 67 0.26 SIDE_CHAIN REMARK 500 17 ARG A 52 0.31 SIDE_CHAIN REMARK 500 17 ARG A 67 0.17 SIDE_CHAIN REMARK 500 18 ARG A 52 0.29 SIDE_CHAIN REMARK 500 18 ARG A 67 0.16 SIDE_CHAIN REMARK 500 18 ARG A 100 0.18 SIDE_CHAIN REMARK 500 19 ARG A 67 0.32 SIDE_CHAIN REMARK 500 19 ARG A 100 0.23 SIDE_CHAIN REMARK 500 20 ARG A 52 0.30 SIDE_CHAIN REMARK 500 20 ARG A 67 0.08 SIDE_CHAIN REMARK 500 20 ARG A 100 0.31 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 107 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD1 REMARK 620 2 ASP A 60 OD1 56.8 REMARK 620 3 GLU A 69 OE1 76.4 90.3 REMARK 620 4 GLU A 69 OE2 118.7 125.1 44.9 REMARK 620 5 ASP A 60 OD2 98.8 42.3 105.2 110.5 REMARK 620 6 ASP A 62 OD1 79.1 51.1 141.4 157.7 50.1 REMARK 620 7 MET A 64 O 51.2 90.1 114.8 132.2 117.2 68.9 REMARK 620 N 1 2 3 4 5 6
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: NPF REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: TRP 54 IS POSITIONED WITHIN A BINDING SITE REMARK 800 FOR ASN-PRO-PHE PEPTIDES. REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 107
DBREF 1EH2 A 6 103 UNP P42566 EP15_HUMAN 121 218
SEQRES 1 A 106 ASN ARG TRP GLY SER PRO TRP ALA VAL LYS PRO GLU ASP SEQRES 2 A 106 LYS ALA LYS TYR ASP ALA ILE PHE ASP SER LEU SER PRO SEQRES 3 A 106 VAL ASN GLY PHE LEU SER GLY ASP LYS VAL LYS PRO VAL SEQRES 4 A 106 LEU LEU ASN SER LYS LEU PRO VAL ASP ILE LEU GLY ARG SEQRES 5 A 106 VAL TRP GLU LEU SER ASP ILE ASP HIS ASP GLY MET LEU SEQRES 6 A 106 ASP ARG ASP GLU PHE ALA VAL ALA MET PHE LEU VAL TYR SEQRES 7 A 106 CYS ALA LEU GLU LYS GLU PRO VAL PRO MET SER LEU PRO SEQRES 8 A 106 PRO ALA LEU VAL PRO PRO SER LYS ARG LYS THR TRP LEU SEQRES 9 A 106 GLU ILE
HET CA A 107 1
HETNAM CA CALCIUM ION
FORMUL 2 CA CA 2+
HELIX 1 1 PRO A 11 PHE A 21 1 11 HELIX 2 2 GLY A 33 LEU A 41 1 9 HELIX 3 3 VAL A 47 SER A 57 1 11 HELIX 4 4 GLU A 69 GLU A 82 1 14
LINK CA CA A 107 OD1 ASP A 58 1555 1555 2.80 LINK CA CA A 107 OD1 ASP A 60 1555 1555 2.53 LINK CA CA A 107 OE1 GLU A 69 1555 1555 2.83 LINK CA CA A 107 OE2 GLU A 69 1555 1555 2.82 LINK CA CA A 107 OD2 ASP A 60 1555 1555 3.19 LINK CA CA A 107 OD1 ASP A 62 1555 1555 2.81 LINK CA CA A 107 O MET A 64 1555 1555 2.70
SITE 1 NPF 1 TRP A 54 SITE 1 AC1 5 ASP A 58 ASP A 60 ASP A 62 MET A 64 SITE 2 AC1 5 GLU A 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000