10 20 30 40 50 60 70 80 1EAL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER FATTY ACID BINDING PROTEIN 28-AUG-96 1EAL
TITLE NMR STUDY OF ILEAL LIPID BINDING PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ILEAL LIPID BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GASTROTROPIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: PH 5.0, 310K, APO FORM
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 CELL_LINE: BL21; SOURCE 6 ORGAN: INTESTINE; SOURCE 7 TISSUE: ILEAL EPITHELIUM; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-3D
KEYWDS INTRACELLULAR LIPID BINDING PROTEIN, BILE ACID BINDING, KEYWDS 2 ILEAL EPITHELIUM, FATTY ACID BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 5
AUTHOR C.LUECKE,F.ZHANG,H.RUETERJANS,J.A.HAMILTON,J.C.SACCHETTINI
REVDAT 3 24-FEB-09 1EAL 1 VERSN REVDAT 2 01-APR-03 1EAL 1 JRNL REVDAT 1 22-JAN-97 1EAL 0
JRNL AUTH C.LUCKE,F.ZHANG,H.RUTERJANS,J.A.HAMILTON, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL FLEXIBILITY IS A LIKELY DETERMINANT OF BINDING JRNL TITL 2 SPECIFICITY IN THE CASE OF ILEAL LIPID BINDING JRNL TITL 3 PROTEIN. JRNL REF STRUCTURE V. 4 785 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805562 JRNL DOI 10.1016/S0969-2126(96)00086-X
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LASSEN,C.LUCKE,M.KVEDER,A.MESGARZADEH, REMARK 1 AUTH 2 J.M.SCHMIDT,B.SPECHT,A.LEZIUS,F.SPENER,H.RUTERJANS REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF BOVINE HEART REMARK 1 TITL 2 FATTY-ACID-BINDING PROTEIN WITH BOUND PALMITIC REMARK 1 TITL 3 ACID, DETERMINED BY MULTIDIMENSIONAL NMR REMARK 1 TITL 4 SPECTROSCOPY REMARK 1 REF EUR.J.BIOCHEM. V. 230 266 1995 REMARK 1 REFN ISSN 0014-2956 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.C.SACCHETTINI,S.M.HAUFT,S.L.VAN CAMP,D.P.CISTOLA, REMARK 1 AUTH 2 J.I.GORDON REMARK 1 TITL DEVELOPMENTAL AND STRUCTURAL STUDIES OF AN REMARK 1 TITL 2 INTRACELLULAR LIPID BINDING PROTEIN EXPRESSED IN REMARK 1 TITL 3 THE ILEAL EPITHELIUM REMARK 1 REF J.BIOL.CHEM. V. 265 19199 1990 REMARK 1 REFN ISSN 0021-9258
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SYBYL 5.2 REMARK 3 AUTHORS : TRIPOS ASSOCIATES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1EAL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TOCSY, NOESY, COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA, SYBYL REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 5 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST VIOLATION OF REMARK 210 EXPERIMENTAL DISTANCE REMARK 210 CONSTRAINTS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 HIS A 98 CE1 HIS A 98 NE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ALA A 127 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 3 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 2 -86.58 -85.23 REMARK 500 1 ASN A 13 61.41 110.83 REMARK 500 1 ALA A 22 67.47 100.17 REMARK 500 1 ARG A 32 -49.76 -22.61 REMARK 500 1 ASN A 33 48.54 -155.94 REMARK 500 1 ASP A 43 -112.83 -100.29 REMARK 500 1 LYS A 67 -126.15 55.34 REMARK 500 1 THR A 73 -71.20 -68.77 REMARK 500 1 ASN A 96 52.70 -145.85 REMARK 500 1 TYR A 97 71.11 -171.01 REMARK 500 1 LEU A 126 51.29 -155.94 REMARK 500 2 ALA A 22 59.91 92.05 REMARK 500 2 PRO A 24 -76.37 -61.07 REMARK 500 2 SER A 25 -59.39 -161.60 REMARK 500 2 ASP A 43 -138.72 -141.39 REMARK 500 2 GLN A 45 34.84 38.83 REMARK 500 2 THR A 73 -62.68 -130.75 REMARK 500 2 ILE A 74 -46.57 173.82 REMARK 500 2 LYS A 78 108.15 -167.15 REMARK 500 2 ASN A 93 66.63 -153.05 REMARK 500 2 ASP A 105 -88.74 52.73 REMARK 500 3 THR A 3 68.42 39.63 REMARK 500 3 SER A 10 71.95 -176.14 REMARK 500 3 ALA A 22 -92.86 108.87 REMARK 500 3 LEU A 23 156.73 59.32 REMARK 500 3 ASN A 33 -51.85 82.16 REMARK 500 3 SER A 58 93.78 -170.11 REMARK 500 3 THR A 73 -175.26 56.98 REMARK 500 3 ILE A 74 -78.51 65.14 REMARK 500 3 GLU A 86 55.79 -154.72 REMARK 500 3 TYR A 97 62.82 -176.06 REMARK 500 3 ASP A 105 47.19 37.04 REMARK 500 3 VAL A 114 51.40 -147.00 REMARK 500 4 THR A 3 73.02 46.02 REMARK 500 4 ALA A 22 57.31 76.06 REMARK 500 4 PRO A 54 89.35 -36.44 REMARK 500 4 HIS A 57 79.72 -104.73 REMARK 500 4 GLU A 68 84.50 121.20 REMARK 500 4 ILE A 74 87.69 44.92 REMARK 500 4 THR A 82 81.90 -67.19 REMARK 500 4 ASN A 96 54.98 -147.39 REMARK 500 4 TYR A 97 67.15 167.08 REMARK 500 4 VAL A 114 56.98 -148.02 REMARK 500 5 PHE A 2 -72.03 74.61 REMARK 500 5 THR A 3 132.46 -35.26 REMARK 500 5 GLU A 11 138.85 -175.96 REMARK 500 5 LYS A 12 51.01 -140.33 REMARK 500 5 ASN A 13 35.68 -152.34 REMARK 500 5 ILE A 59 64.39 -115.46 REMARK 500 5 LYS A 77 155.11 54.08 REMARK 500 5 ARG A 121 96.51 -165.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 14 0.07 SIDE_CHAIN REMARK 500 1 TYR A 119 0.12 SIDE_CHAIN REMARK 500 2 TYR A 53 0.11 SIDE_CHAIN REMARK 500 3 TYR A 14 0.12 SIDE_CHAIN REMARK 500 4 TYR A 14 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 1EAL A 1 127 UNP P10289 ILBP_PIG 1 127
SEQADV 1EAL SER A 118 UNP P10289 THR 118 CONFLICT
SEQRES 1 A 127 ALA PHE THR GLY LYS TYR GLU ILE GLU SER GLU LYS ASN SEQRES 2 A 127 TYR ASP GLU PHE MET LYS ARG LEU ALA LEU PRO SER ASP SEQRES 3 A 127 ALA ILE ASP LYS ALA ARG ASN LEU LYS ILE ILE SER GLU SEQRES 4 A 127 VAL LYS GLN ASP GLY GLN ASN PHE THR TRP SER GLN GLN SEQRES 5 A 127 TYR PRO GLY GLY HIS SER ILE THR ASN THR PHE THR ILE SEQRES 6 A 127 GLY LYS GLU CYS ASP ILE GLU THR ILE GLY GLY LYS LYS SEQRES 7 A 127 PHE LYS ALA THR VAL GLN MET GLU GLY GLY LYS VAL VAL SEQRES 8 A 127 VAL ASN SER PRO ASN TYR HIS HIS THR ALA GLU ILE VAL SEQRES 9 A 127 ASP GLY LYS LEU VAL GLU VAL SER THR VAL GLY GLY VAL SEQRES 10 A 127 SER TYR GLU ARG VAL SER LYS LYS LEU ALA
HELIX 1 1 ASN A 13 LEU A 21 1 9 HELIX 2 2 SER A 25 ARG A 32 1 8
SHEET 1 A 8 SER A 58 THR A 64 0 SHEET 2 A 8 PHE A 47 GLN A 52 -1 N GLN A 51 O ILE A 59 SHEET 3 A 8 ILE A 37 GLN A 42 -1 N LYS A 41 O THR A 48 SHEET 4 A 8 GLY A 4 LYS A 12 -1 N TYR A 6 O SER A 38 SHEET 5 A 8 SER A 118 LYS A 125 -1 N LYS A 124 O GLU A 7 SHEET 6 A 8 LEU A 108 THR A 113 -1 N GLU A 110 O ARG A 121 SHEET 7 A 8 HIS A 98 ILE A 103 -1 N GLU A 102 O VAL A 109 SHEET 8 A 8 VAL A 90 ASN A 93 -1 N VAL A 92 O HIS A 99 SHEET 1 B 2 CYS A 69 GLU A 72 0 SHEET 2 B 2 LYS A 78 MET A 85 -1 N ALA A 81 O CYS A 69
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000