1E8V - Header Asymmetric Unit

HEADER HYDROLASE 01-OCT-00 1E8V

TITLE STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS TITLE 2 HEMAGGLUTININ-NEURAMINIDASE

CAVEAT 1E8V NAG A1572 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 1E8V NAG B1571 HAS WRONG CHIRALITY AT ATOM C1

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HEAD DOMAIN, RESIDUES 124-577; COMPND 5 SYNONYM: HN; COMPND 6 EC: 3.2.1.18

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEWCASTLE DISEASE VIRUS; SOURCE 3 ORGANISM_TAXID: 11176; SOURCE 4 STRAIN: KANSAS

KEYWDS SIALIDASE, NEURAMINIDASE, HEMAGGLUTININ, HYDROLASE

EXPDTA X-RAY DIFFRACTION

AUTHOR S.CRENNELL,T.TAKIMOTO,A.PORTNER,G.TAYLOR

REVDAT 4 09-NOV-11 1E8V 1 HEADER CAVEAT COMPND KEYWDS REVDAT 4 2 REMARK HET HETNAM FORMUL REVDAT 4 3 HETSYN LINK SITE HETATM REVDAT 4 4 VERSN REVDAT 3 24-FEB-09 1E8V 1 VERSN REVDAT 2 18-JUL-03 1E8V 1 REMARK REVDAT 1 03-APR-01 1E8V 0

JRNL AUTH S.CRENNELL,T.TAKIMOTO,A.PORTNER,G.TAYLOR JRNL TITL CRYSTAL STRUCTURE OF THE MULTIFUNCTIONAL JRNL TITL 2 PARAMYXOVIRUS HEMAGGLUTININ-NEURAMINIDASE JRNL REF NAT.STRUCT.BIOL. V. 7 1068 2000 JRNL REFN ISSN 1072-8368 JRNL PMID 11062565 JRNL DOI 10.1038/81002

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.TAKIMOTO,G.L.TAYLOR,S.J.CRENNELL,R.A.SCROGGS, REMARK 1 AUTH 2 A.PORTNER REMARK 1 TITL CRYSTALLIZATION OF NEWCASTLE DISEASE VIRUS REMARK 1 TITL 2 HEMAGGLUTININ-NEURAMINIDASE GLYCOPROTEIN REMARK 1 REF VIROLOGY V. 270 208 2000 REMARK 1 REFN ISSN 0042-6822 REMARK 1 PMID 10772993 REMARK 1 DOI 10.1006/VIRO.2000.0263

REMARK 2 REMARK 2 RESOLUTION. 2.0 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.0 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97 REMARK 3 NUMBER OF REFLECTIONS : 75779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3840 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.38 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 1E8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-00. REMARK 100 THE PDBE ID CODE IS EBI-5409.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.909 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 12.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : 0.05200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.86667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.30000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 97.16667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.43333 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 571 REMARK 465 ARG A 572 REMARK 465 GLU A 573 REMARK 465 ALA A 574 REMARK 465 ARG A 575 REMARK 465 SER A 576 REMARK 465 GLY A 577 REMARK 465 GLY B 570 REMARK 465 VAL B 571 REMARK 465 ARG B 572 REMARK 465 GLU B 573 REMARK 465 ALA B 574 REMARK 465 ARG B 575 REMARK 465 SER B 576 REMARK 465 GLY B 577

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2036 O HOH A 2037 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 449 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 449 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 449 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG B 449 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 449 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 449 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 175 68.51 63.66 REMARK 500 ASP A 231 -153.30 -133.64 REMARK 500 VAL A 302 -37.22 64.17 REMARK 500 VAL A 335 141.84 -175.76 REMARK 500 ARG A 363 -40.09 -24.59 REMARK 500 SER A 419 -148.66 -96.12 REMARK 500 ASN A 433 -116.79 67.45 REMARK 500 CYS A 455 42.61 -100.87 REMARK 500 THR A 467 -138.37 -141.65 REMARK 500 PRO A 475 109.13 -54.48 REMARK 500 HIS A 482 5.02 85.49 REMARK 500 ASN A 500 90.06 49.27 REMARK 500 ALA A 525 -136.05 -143.76 REMARK 500 TYR A 526 153.39 -46.42 REMARK 500 LEU A 552 -54.79 72.21 REMARK 500 ILE B 175 67.75 64.10 REMARK 500 ASP B 231 -154.14 -134.76 REMARK 500 VAL B 302 -38.32 65.00 REMARK 500 VAL B 335 141.59 -175.46 REMARK 500 ASP B 346 150.83 -49.20 REMARK 500 ARG B 363 -39.79 -24.16 REMARK 500 SER B 419 -147.08 -95.11 REMARK 500 ASN B 433 -116.58 67.86 REMARK 500 CYS B 455 42.98 -101.69 REMARK 500 THR B 467 -139.79 -143.09 REMARK 500 PRO B 475 109.37 -55.30 REMARK 500 HIS B 482 5.49 86.00 REMARK 500 ASN B 500 89.75 48.85 REMARK 500 ALA B 525 -136.05 -143.54 REMARK 500 TYR B 526 153.90 -47.42 REMARK 500 LEU B 552 -54.28 73.65 REMARK 500 ASN B 568 -75.02 -40.64 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 264 O REMARK 620 2 SER A 264 OG 72.3 REMARK 620 3 VAL A 266 O 85.2 131.2 REMARK 620 4 VAL A 296 O 82.7 142.3 72.0 REMARK 620 5 ASP A 261 OD1 149.5 92.0 123.6 96.0 REMARK 620 6 ASP A 261 O 74.3 69.4 144.7 77.1 75.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 266 O REMARK 620 2 VAL B 296 O 71.6 REMARK 620 3 ASP B 261 O 137.6 71.7 REMARK 620 4 ASP B 261 OD1 128.8 95.6 75.2 REMARK 620 5 SER B 264 O 82.0 77.4 70.0 145.0 REMARK 620 6 SER B 264 OG 131.6 133.7 67.1 93.5 69.5 REMARK 620 N 1 2 3 4 5

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAN A1571 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DAN B1570 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF SUGAR BOUND TO REMARK 800 ASN A 341 RESIDUES 1572 TO 1572 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN A OF SUGAR BOUND TO REMARK 800 ASN A 481 RESIDUES 1573 TO 1573 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF SUGAR BOUND TO REMARK 800 ASN B 341 RESIDUES 841 TO 841 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF SUGAR BOUND TO REMARK 800 ASN B 481 RESIDUES 1571 TO 1572

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E8T RELATED DB: PDB REMARK 900 STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS REMARK 900 HEMAGGLUTININ-NEURAMINIDASE REMARK 900 RELATED ID: 1E8U RELATED DB: PDB REMARK 900 STRUCTURE OF THE MULTIFUNCTIONAL PARAMYXOVIRUS REMARK 900 HEMAGGLUTININ-NEURAMINIDASE

DBREF 1E8V A 124 577 UNP Q9Q2W5 Q9Q2W5 124 577 DBREF 1E8V B 124 577 UNP Q9Q2W5 Q9Q2W5 124 577

SEQRES 1 A 454 GLY ALA PRO ILE HIS ASP PRO ASP PHE ILE GLY GLY ILE SEQRES 2 A 454 GLY LYS GLU LEU ILE VAL ASP ASN ALA SER ASP VAL THR SEQRES 3 A 454 SER PHE TYR PRO SER ALA PHE GLN GLU HIS LEU ASN PHE SEQRES 4 A 454 ILE PRO ALA PRO THR THR GLY SER GLY CYS THR ARG ILE SEQRES 5 A 454 PRO SER PHE ASP MET SER ALA THR HIS TYR CYS TYR THR SEQRES 6 A 454 HIS ASN VAL ILE LEU SER GLY CYS ARG ASP HIS SER HIS SEQRES 7 A 454 SER HIS GLN TYR LEU ALA LEU GLY VAL LEU ARG THR THR SEQRES 8 A 454 ALA THR GLY ARG ILE PHE PHE SER THR LEU ARG SER ILE SEQRES 9 A 454 SER LEU ASP ASP THR GLN ASN ARG LYS SER CYS SER VAL SEQRES 10 A 454 SER ALA THR PRO LEU GLY CYS ASP MET LEU CYS SER LYS SEQRES 11 A 454 VAL THR GLU THR GLU GLU GLU ASP TYR ASN SER ALA VAL SEQRES 12 A 454 PRO THR LEU MET ALA HIS GLY ARG LEU GLY PHE ASP GLY SEQRES 13 A 454 GLN TYR HIS GLU LYS ASP LEU ASP VAL THR THR LEU PHE SEQRES 14 A 454 GLU ASP TRP VAL ALA ASN TYR PRO GLY VAL GLY GLY GLY SEQRES 15 A 454 SER PHE ILE ASP GLY ARG VAL TRP PHE SER VAL TYR GLY SEQRES 16 A 454 GLY LEU LYS PRO ASN SER PRO SER ASP THR VAL GLN GLU SEQRES 17 A 454 GLY LYS TYR VAL ILE TYR LYS ARG TYR ASN ASP THR CYS SEQRES 18 A 454 PRO ASP GLU GLN ASP TYR GLN ILE ARG MET ALA LYS SER SEQRES 19 A 454 SER TYR LYS PRO GLY ARG PHE GLY GLY LYS ARG ILE GLN SEQRES 20 A 454 GLN ALA ILE LEU SER ILE LYS VAL SER THR SER LEU GLY SEQRES 21 A 454 GLU ASP PRO VAL LEU THR VAL PRO PRO ASN THR VAL THR SEQRES 22 A 454 LEU MET GLY ALA GLU GLY ARG ILE LEU THR VAL GLY THR SEQRES 23 A 454 SER HIS PHE LEU TYR GLN ARG GLY SER SER TYR PHE SER SEQRES 24 A 454 PRO ALA LEU LEU TYR PRO MET THR VAL SER ASN LYS THR SEQRES 25 A 454 ALA THR LEU HIS SER PRO TYR THR PHE ASN ALA PHE THR SEQRES 26 A 454 ARG PRO GLY SER ILE PRO CYS GLN ALA SER ALA ARG CYS SEQRES 27 A 454 PRO ASN SER CYS VAL THR GLY VAL TYR THR ASP PRO TYR SEQRES 28 A 454 PRO LEU ILE PHE TYR ARG ASN HIS THR LEU ARG GLY VAL SEQRES 29 A 454 PHE GLY THR MET LEU ASP SER GLU GLN ALA ARG LEU ASN SEQRES 30 A 454 PRO ALA SER ALA VAL PHE ASP SER THR SER ARG SER ARG SEQRES 31 A 454 ILE THR ARG VAL SER SER SER SER THR LYS ALA ALA TYR SEQRES 32 A 454 THR THR SER THR CYS PHE LYS VAL VAL LYS THR ASN LYS SEQRES 33 A 454 THR TYR CYS LEU SER ILE ALA GLU ILE SER ASN THR LEU SEQRES 34 A 454 PHE GLY GLU PHE ARG ILE VAL PRO LEU LEU VAL GLU ILE SEQRES 35 A 454 LEU LYS ASN ASP GLY VAL ARG GLU ALA ARG SER GLY SEQRES 1 B 454 GLY ALA PRO ILE HIS ASP PRO ASP PHE ILE GLY GLY ILE SEQRES 2 B 454 GLY LYS GLU LEU ILE VAL ASP ASN ALA SER ASP VAL THR SEQRES 3 B 454 SER PHE TYR PRO SER ALA PHE GLN GLU HIS LEU ASN PHE SEQRES 4 B 454 ILE PRO ALA PRO THR THR GLY SER GLY CYS THR ARG ILE SEQRES 5 B 454 PRO SER PHE ASP MET SER ALA THR HIS TYR CYS TYR THR SEQRES 6 B 454 HIS ASN VAL ILE LEU SER GLY CYS ARG ASP HIS SER HIS SEQRES 7 B 454 SER HIS GLN TYR LEU ALA LEU GLY VAL LEU ARG THR THR SEQRES 8 B 454 ALA THR GLY ARG ILE PHE PHE SER THR LEU ARG SER ILE SEQRES 9 B 454 SER LEU ASP ASP THR GLN ASN ARG LYS SER CYS SER VAL SEQRES 10 B 454 SER ALA THR PRO LEU GLY CYS ASP MET LEU CYS SER LYS SEQRES 11 B 454 VAL THR GLU THR GLU GLU GLU ASP TYR ASN SER ALA VAL SEQRES 12 B 454 PRO THR LEU MET ALA HIS GLY ARG LEU GLY PHE ASP GLY SEQRES 13 B 454 GLN TYR HIS GLU LYS ASP LEU ASP VAL THR THR LEU PHE SEQRES 14 B 454 GLU ASP TRP VAL ALA ASN TYR PRO GLY VAL GLY GLY GLY SEQRES 15 B 454 SER PHE ILE ASP GLY ARG VAL TRP PHE SER VAL TYR GLY SEQRES 16 B 454 GLY LEU LYS PRO ASN SER PRO SER ASP THR VAL GLN GLU SEQRES 17 B 454 GLY LYS TYR VAL ILE TYR LYS ARG TYR ASN ASP THR CYS SEQRES 18 B 454 PRO ASP GLU GLN ASP TYR GLN ILE ARG MET ALA LYS SER SEQRES 19 B 454 SER TYR LYS PRO GLY ARG PHE GLY GLY LYS ARG ILE GLN SEQRES 20 B 454 GLN ALA ILE LEU SER ILE LYS VAL SER THR SER LEU GLY SEQRES 21 B 454 GLU ASP PRO VAL LEU THR VAL PRO PRO ASN THR VAL THR SEQRES 22 B 454 LEU MET GLY ALA GLU GLY ARG ILE LEU THR VAL GLY THR SEQRES 23 B 454 SER HIS PHE LEU TYR GLN ARG GLY SER SER TYR PHE SER SEQRES 24 B 454 PRO ALA LEU LEU TYR PRO MET THR VAL SER ASN LYS THR SEQRES 25 B 454 ALA THR LEU HIS SER PRO TYR THR PHE ASN ALA PHE THR SEQRES 26 B 454 ARG PRO GLY SER ILE PRO CYS GLN ALA SER ALA ARG CYS SEQRES 27 B 454 PRO ASN SER CYS VAL THR GLY VAL TYR THR ASP PRO TYR SEQRES 28 B 454 PRO LEU ILE PHE TYR ARG ASN HIS THR LEU ARG GLY VAL SEQRES 29 B 454 PHE GLY THR MET LEU ASP SER GLU GLN ALA ARG LEU ASN SEQRES 30 B 454 PRO ALA SER ALA VAL PHE ASP SER THR SER ARG SER ARG SEQRES 31 B 454 ILE THR ARG VAL SER SER SER SER THR LYS ALA ALA TYR SEQRES 32 B 454 THR THR SER THR CYS PHE LYS VAL VAL LYS THR ASN LYS SEQRES 33 B 454 THR TYR CYS LEU SER ILE ALA GLU ILE SER ASN THR LEU SEQRES 34 B 454 PHE GLY GLU PHE ARG ILE VAL PRO LEU LEU VAL GLU ILE SEQRES 35 B 454 LEU LYS ASN ASP GLY VAL ARG GLU ALA ARG SER GLY

HET NAG A1572 14 HET NAG A1573 14 HET NAG B 841 14 HET NAG B1571 14 HET NAG B1572 14 HET CA A1001 1 HET CA B1002 1 HET DAN A1571 20 HET DAN B1570 20

HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM CA CALCIUM ION HETNAM DAN 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID

FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 4 CA 2(CA 2+) FORMUL 5 DAN 2(C11 H17 N O8) FORMUL 6 HOH *239(H2 O)

HELIX 1 1 ASP A 129 ILE A 133 5 5 HELIX 2 2 ASP A 147 THR A 149 5 3 HELIX 3 3 THR A 257 SER A 264 1 8 HELIX 4 4 ASP A 287 PHE A 292 1 6 HELIX 5 5 SER A 324 GLU A 331 1 8 HELIX 6 6 GLU A 347 TYR A 359 1 13 HELIX 7 7 ASP B 129 ILE B 133 5 5 HELIX 8 8 ASP B 147 THR B 149 5 3 HELIX 9 9 THR B 257 SER B 264 1 8 HELIX 10 10 ASP B 287 PHE B 292 1 6 HELIX 11 11 SER B 324 GLU B 331 1 8 HELIX 12 12 GLU B 347 TYR B 359 1 13

SHEET 1 A 2 PHE A 151 PRO A 153 0 SHEET 2 A 2 ILE A 565 LYS A 567 -1 N LEU A 566 O TYR A 152 SHEET 1 B 4 CYS A 172 ARG A 174 0 SHEET 2 B 4 TYR A 185 ILE A 192 -1 N ILE A 192 O CYS A 172 SHEET 3 B 4 HIS A 203 THR A 213 -1 N GLY A 209 O TYR A 185 SHEET 4 B 4 ILE A 219 LEU A 229 -1 N LEU A 229 O GLN A 204 SHEET 1 C 2 SER A 177 MET A 180 0 SHEET 2 C 2 TYR A 185 THR A 188 -1 N THR A 188 O SER A 177 SHEET 1 D 4 SER A 239 THR A 243 0 SHEET 2 D 4 GLY A 246 LYS A 253 -1 N LEU A 250 O SER A 239 SHEET 3 D 4 LEU A 269 GLY A 276 -1 N LEU A 275 O CYS A 247 SHEET 4 D 4 TYR A 281 ASP A 285 -1 N LYS A 284 O HIS A 272 SHEET 1 E 4 SER A 306 ILE A 308 0 SHEET 2 E 4 ARG A 311 LEU A 320 -1 N TRP A 313 O SER A 306 SHEET 3 E 4 ARG A 368 LYS A 377 -1 N ILE A 376 O VAL A 312 SHEET 4 E 4 VAL A 387 THR A 389 -1 N THR A 389 O ILE A 373 SHEET 1 F 4 GLY A 402 VAL A 407 0 SHEET 2 F 4 SER A 410 GLN A 415 -1 N TYR A 414 O ARG A 403 SHEET 3 F 4 ALA A 424 MET A 429 -1 N MET A 429 O HIS A 411 SHEET 4 F 4 TYR A 442 PHE A 444 -1 N PHE A 444 O ALA A 424 SHEET 1 G 2 MET A 429 SER A 432 0 SHEET 2 G 2 THR A 435 LEU A 438 -1 N THR A 437 O THR A 430 SHEET 1 H 3 PRO A 501 PHE A 506 0 SHEET 2 H 3 GLY A 486 LEU A 492 -1 N MET A 491 O ALA A 502 SHEET 3 H 3 PRO A 473 ILE A 477 -1 N ILE A 477 O GLY A 486 SHEET 1 I 3 THR A 527 VAL A 534 0 SHEET 2 I 3 LYS A 539 SER A 549 -1 N ILE A 545 O THR A 528 SHEET 3 I 3 PHE A 556 GLU A 564 -1 N VAL A 563 O CYS A 542 SHEET 1 J 2 TRP A 295 PRO A 300 0 SHEET 2 J 2 VAL A 316 LEU A 320 -1 N GLY A 319 O VAL A 296 SHEET 1 K 2 PHE B 151 PRO B 153 0 SHEET 2 K 2 ILE B 565 LYS B 567 -1 N LEU B 566 O TYR B 152 SHEET 1 L 4 CYS B 172 ARG B 174 0 SHEET 2 L 4 TYR B 185 ILE B 192 -1 N ILE B 192 O CYS B 172 SHEET 3 L 4 HIS B 203 THR B 213 -1 N GLY B 209 O TYR B 185 SHEET 4 L 4 ILE B 219 LEU B 229 -1 N LEU B 229 O GLN B 204 SHEET 1 M 2 SER B 177 MET B 180 0 SHEET 2 M 2 TYR B 185 THR B 188 -1 N THR B 188 O SER B 177 SHEET 1 N 4 SER B 239 THR B 243 0 SHEET 2 N 4 GLY B 246 LYS B 253 -1 N LEU B 250 O SER B 239 SHEET 3 N 4 LEU B 269 GLY B 276 -1 N LEU B 275 O CYS B 247 SHEET 4 N 4 TYR B 281 ASP B 285 -1 N LYS B 284 O HIS B 272 SHEET 1 O 4 SER B 306 ILE B 308 0 SHEET 2 O 4 ARG B 311 LEU B 320 -1 N TRP B 313 O SER B 306 SHEET 3 O 4 ARG B 368 LYS B 377 -1 N ILE B 376 O VAL B 312 SHEET 4 O 4 VAL B 387 THR B 389 -1 N THR B 389 O ILE B 373 SHEET 1 P 4 GLY B 402 VAL B 407 0 SHEET 2 P 4 SER B 410 GLN B 415 -1 N TYR B 414 O ARG B 403 SHEET 3 P 4 ALA B 424 MET B 429 -1 N MET B 429 O HIS B 411 SHEET 4 P 4 TYR B 442 PHE B 444 -1 N PHE B 444 O ALA B 424 SHEET 1 Q 2 MET B 429 SER B 432 0 SHEET 2 Q 2 THR B 435 LEU B 438 -1 N THR B 437 O THR B 430 SHEET 1 R 3 PRO B 501 PHE B 506 0 SHEET 2 R 3 GLY B 486 LEU B 492 -1 N MET B 491 O ALA B 502 SHEET 3 R 3 PRO B 473 ILE B 477 -1 N ILE B 477 O GLY B 486 SHEET 1 S 3 THR B 527 VAL B 534 0 SHEET 2 S 3 LYS B 539 SER B 549 -1 N ILE B 545 O THR B 528 SHEET 3 S 3 PHE B 556 GLU B 564 -1 N VAL B 563 O CYS B 542 SHEET 1 T 2 TRP B 295 PRO B 300 0 SHEET 2 T 2 VAL B 316 LEU B 320 -1 N GLY B 319 O VAL B 296

SSBOND 1 CYS A 172 CYS A 196 1555 1555 2.03 SSBOND 2 CYS A 186 CYS A 247 1555 1555 2.04 SSBOND 3 CYS A 238 CYS A 251 1555 1555 2.03 SSBOND 4 CYS A 344 CYS A 461 1555 1555 2.03 SSBOND 5 CYS A 455 CYS A 465 1555 1555 2.03 SSBOND 6 CYS A 531 CYS A 542 1555 1555 2.03 SSBOND 7 CYS B 172 CYS B 196 1555 1555 2.04 SSBOND 8 CYS B 186 CYS B 247 1555 1555 2.04 SSBOND 9 CYS B 238 CYS B 251 1555 1555 2.02 SSBOND 10 CYS B 344 CYS B 461 1555 1555 2.03 SSBOND 11 CYS B 455 CYS B 465 1555 1555 2.03 SSBOND 12 CYS B 531 CYS B 542 1555 1555 2.02

LINK ND2 ASN A 341 C1 NAG A1572 1555 1555 1.47 LINK ND2 ASN A 481 C1 NAG A1573 1555 1555 1.45 LINK CA CA A1001 O SER A 264 1555 1555 2.36 LINK CA CA A1001 OG SER A 264 1555 1555 2.66 LINK CA CA A1001 O VAL A 266 1555 1555 2.22 LINK CA CA A1001 O VAL A 296 1555 1555 2.43 LINK CA CA A1001 OD1 ASP A 261 1555 1555 2.50 LINK CA CA A1001 O ASP A 261 1555 1555 2.46 LINK ND2 ASN B 341 C1 NAG B 841 1555 1555 1.46 LINK ND2 ASN B 481 C1 NAG B1571 1555 1555 1.45 LINK CA CA B1002 O VAL B 266 1555 1555 2.19 LINK CA CA B1002 OD1 ASP B 261 1555 1555 2.42 LINK CA CA B1002 O VAL B 296 1555 1555 2.52 LINK CA CA B1002 O ASP B 261 1555 1555 2.58 LINK CA CA B1002 O SER B 264 1555 1555 2.48 LINK CA CA B1002 OG SER B 264 1555 1555 2.69 LINK O4 NAG B1571 C1 NAG B1572 1555 1555 1.38

CISPEP 1 ILE A 453 PRO A 454 0 0.25 CISPEP 2 ILE B 453 PRO B 454 0 0.08

SITE 1 AC1 4 ASP A 261 SER A 264 VAL A 266 VAL A 296 SITE 1 AC2 5 GLU B 256 ASP B 261 SER B 264 VAL B 266 SITE 2 AC2 5 VAL B 296 SITE 1 AC3 11 ARG A 174 GLU A 258 TYR A 299 TYR A 317 SITE 2 AC3 11 ARG A 363 GLU A 401 ARG A 416 ARG A 498 SITE 3 AC3 11 TYR A 526 HOH A2128 HOH A2129 SITE 1 AC4 11 ARG B 174 GLU B 258 TYR B 299 TYR B 317 SITE 2 AC4 11 GLU B 401 ARG B 416 ARG B 498 TYR B 526 SITE 3 AC4 11 HOH B2108 HOH B2109 HOH B2110 SITE 1 AC5 2 TYR A 340 ASN A 341 SITE 1 AC6 2 ASN A 481 THR A 483 SITE 1 AC7 2 TYR B 340 ASN B 341 SITE 1 AC8 3 TYR B 479 ASN B 481 THR B 483

CRYST1 137.460 137.460 116.600 90.00 90.00 120.00 P 61 6

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.007275 0.004200 0.000000 0.00000

SCALE2 0.000000 0.008400 0.000000 0.00000

SCALE3 0.000000 0.000000 0.008576 0.00000

MTRIX1 1 -0.161500 0.986900 0.009000 0.02500 1

MTRIX2 1 0.986900 0.161500 0.005800 -0.33000 1

MTRIX3 1 0.005600 0.001900 -1.000000 35.34000 1