10 20 30 40 50 60 70 80 1E6C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 10-AUG-00 1E6C
TITLE K15M MUTANT OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.71; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA CHRYSANTHEMI; SOURCE 3 ORGANISM_TAXID: 556; SOURCE 4 GENE: AROL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: T7 RNA POLYMERASE BASED; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTB361SK; SOURCE 11 EXPRESSION_SYSTEM_GENE: AROL
KEYWDS MUTANT SHIKIMATE KINASE, PHOSPHORYL TRANSFER, ADP, KEYWDS 2 SHIKIMATE PATHWAY, P-LOOP PROTEIN, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.MACLEAN,T.KRELL,J.R.COGGINS,A.J.LAPTHORN
REVDAT 2 24-FEB-09 1E6C 1 VERSN REVDAT 1 20-JUN-01 1E6C 0
JRNL AUTH T.KRELL,J.MACLEAN,D.J.BOAM,A.COOPER,M.RESMINI, JRNL AUTH 2 K.BROCKLEHURST,S.M.KELLY,N.C.PRICE,A.J.LAPTHORN, JRNL AUTH 3 J.R.COGGINS JRNL TITL BIOCHEMICAL AND X-RAY CRYSTALLOGRAPHIC STUDIES ON JRNL TITL 2 SHIKIMATE KINASE: THE IMPORTANT STRUCTURAL ROLE OF JRNL TITL 3 THE P-LOOP LYSINE JRNL REF PROTEIN SCI. V. 10 1137 2001 JRNL REFN ISSN 0961-8368 JRNL PMID 11369852 JRNL DOI 10.1110/PS.52501
REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KRELL,J.R.COGGINS,A.J.LAPTHORN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE REMARK 1 REF J.MOL.BIOL. V. 278 983 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 9600856 REMARK 1 DOI 10.1006/JMBI.1998.1755
REMARK 2 REMARK 2 RESOLUTION. 1.8 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.8 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 30838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1551 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.073 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.16471 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.14659 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.038 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.033 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.021 ; 0.03 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.125 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.184 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.265 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.173 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.0 ; NULL REMARK 3 PLANAR (DEGREES) : 4.0 ; 7.0 REMARK 3 STAGGERED (DEGREES) : 16.9 ; 15.0 REMARK 3 TRANSVERSE (DEGREES) : 36.4 ; 20.0 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.623 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.242 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.576 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOM CONTRIBUTION AND REMARK 3 EXTERNAL BULK SOLVENT CORRECTION WERE APPLIED AS FPART . THE REMARK 3 SPACE GROUP ASSIGNMENT WAS EXTREMELY CLOSE BETWEEN P21 AND REMARK 3 C2221. IT WAS DECIDED TO PROCEED WITH P21 AND USE STRICT NCS REMARK 3 RESTRAINTS BETWEEN MONOMERS.
REMARK 4 REMARK 4 1E6C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-00. REMARK 100 THE PDBE ID CODE IS EBI-5203.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27407 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 21.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34800 REMARK 200 R SYM FOR SHELL (I) : 0.34800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1SHK REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG8000, 100MM TRIS/HCL BUFFER REMARK 280 PH 8.0, 2.5MM ADP, 2.5MM SHIKIMATE, 10MM MGCL2
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A, B ENGINEERED MUTATION LYS15MET REMARK 400 ENZYME REACTION: ATP + SHIKIMATE = ADP + SHIKIMATE 3-PHOSPHATE. REMARK 400 INVOLVED IN THE BIOSYNTHESIS OF AROMATIC AMINO ACIDS
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 171 REMARK 465 ALA A 172 REMARK 465 ALA A 173 REMARK 465 PRO B 171 REMARK 465 ALA B 172 REMARK 465 ALA B 173
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 GLN B 166 CG CD OE1 NE2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA MET A 1 - O HOH A 2001 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CB - CG - SD ANGL. DEV. = 22.5 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 59 CD - NE - CZ ANGL. DEV. = 26.9 DEGREES REMARK 500 ARG A 59 CG - CD - NE ANGL. DEV. = 26.7 DEGREES REMARK 500 GLU A 61 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 PHE A 90 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 126 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 152 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 MET B 15 CG - SD - CE ANGL. DEV. = 12.1 DEGREES REMARK 500 ASP B 34 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 34 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 59 CD - NE - CZ ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG B 59 CG - CD - NE ANGL. DEV. = 40.9 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG B 126 NH1 - CZ - NH2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP B 152 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 152 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -4.85 -154.50 REMARK 500 ARG A 169 66.30 67.66 REMARK 500 THR B 2 -4.59 -175.96 REMARK 500 PRO B 71 155.22 -49.21 REMARK 500 ARG B 169 67.31 71.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 11 10.06 REMARK 500 THR B 70 11.56 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 905
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2SHK RELATED DB: PDB REMARK 900 THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 ERWINIA CHRYSANTHEMI COMPLEXED WITH ADP REMARK 900 RELATED ID: 1SHK RELATED DB: PDB REMARK 900 THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 ERWINIA CHRYSANTHEMI
REMARK 999 REMARK 999 SEQUENCE REMARK 999 REFERENCE: THE SEQUENCE IS DESCRIBED IN MINTON N.P., REMARK 999 WHITEHEAD P.J., ATKINSON T., GILBERT H.J. NUCLEIC ACIDS REMARK 999 RES. 17:1769-1769(1989).
DBREF 1E6C A 1 173 UNP P10880 AROL_ERWCH 1 173 DBREF 1E6C B 1 173 UNP P10880 AROL_ERWCH 1 173
SEQADV 1E6C MET A 15 UNP P10880 LYS 15 ENGINEERED MUTATION SEQADV 1E6C MET B 15 UNP P10880 LYS 15 ENGINEERED MUTATION SEQADV 1E6C LEU A 115 UNP P10880 PRO 115 CLONING ARTIFACT SEQADV 1E6C LEU B 115 UNP P10880 PRO 115 CLONING ARTIFACT
SEQRES 1 A 173 MET THR GLU PRO ILE PHE MET VAL GLY ALA ARG GLY CYS SEQRES 2 A 173 GLY MET THR THR VAL GLY ARG GLU LEU ALA ARG ALA LEU SEQRES 3 A 173 GLY TYR GLU PHE VAL ASP THR ASP ILE PHE MET GLN HIS SEQRES 4 A 173 THR SER GLY MET THR VAL ALA ASP VAL VAL ALA ALA GLU SEQRES 5 A 173 GLY TRP PRO GLY PHE ARG ARG ARG GLU SER GLU ALA LEU SEQRES 6 A 173 GLN ALA VAL ALA THR PRO ASN ARG VAL VAL ALA THR GLY SEQRES 7 A 173 GLY GLY MET VAL LEU LEU GLU GLN ASN ARG GLN PHE MET SEQRES 8 A 173 ARG ALA HIS GLY THR VAL VAL TYR LEU PHE ALA PRO ALA SEQRES 9 A 173 GLU GLU LEU ALA LEU ARG LEU GLN ALA SER LEU GLN ALA SEQRES 10 A 173 HIS GLN ARG PRO THR LEU THR GLY ARG PRO ILE ALA GLU SEQRES 11 A 173 GLU MET GLU ALA VAL LEU ARG GLU ARG GLU ALA LEU TYR SEQRES 12 A 173 GLN ASP VAL ALA HIS TYR VAL VAL ASP ALA THR GLN PRO SEQRES 13 A 173 PRO ALA ALA ILE VAL CYS GLU LEU MET GLN THR MET ARG SEQRES 14 A 173 LEU PRO ALA ALA SEQRES 1 B 173 MET THR GLU PRO ILE PHE MET VAL GLY ALA ARG GLY CYS SEQRES 2 B 173 GLY MET THR THR VAL GLY ARG GLU LEU ALA ARG ALA LEU SEQRES 3 B 173 GLY TYR GLU PHE VAL ASP THR ASP ILE PHE MET GLN HIS SEQRES 4 B 173 THR SER GLY MET THR VAL ALA ASP VAL VAL ALA ALA GLU SEQRES 5 B 173 GLY TRP PRO GLY PHE ARG ARG ARG GLU SER GLU ALA LEU SEQRES 6 B 173 GLN ALA VAL ALA THR PRO ASN ARG VAL VAL ALA THR GLY SEQRES 7 B 173 GLY GLY MET VAL LEU LEU GLU GLN ASN ARG GLN PHE MET SEQRES 8 B 173 ARG ALA HIS GLY THR VAL VAL TYR LEU PHE ALA PRO ALA SEQRES 9 B 173 GLU GLU LEU ALA LEU ARG LEU GLN ALA SER LEU GLN ALA SEQRES 10 B 173 HIS GLN ARG PRO THR LEU THR GLY ARG PRO ILE ALA GLU SEQRES 11 B 173 GLU MET GLU ALA VAL LEU ARG GLU ARG GLU ALA LEU TYR SEQRES 12 B 173 GLN ASP VAL ALA HIS TYR VAL VAL ASP ALA THR GLN PRO SEQRES 13 B 173 PRO ALA ALA ILE VAL CYS GLU LEU MET GLN THR MET ARG SEQRES 14 B 173 LEU PRO ALA ALA
HET PO4 A 802 5 HET CL A 804 1 HET PO4 B 801 5 HET CL B 803 1 HET MRD A 903 8 HET MPD A 902 8 HET MPD A 906 8 HET MPD B 901 8 HET MPD B 904 8 HET MPD B 905 8
HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL
HETSYN MPD MPD
FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 CL 2(CL 1-) FORMUL 7 MRD C6 H14 O2 FORMUL 8 MPD 5(C6 H14 O2) FORMUL 13 HOH *214(H2 O1)
HELIX 1 1 GLY A 14 GLY A 27 1 14 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 THR A 44 GLY A 53 1 10 HELIX 4 4 GLU A 52 ALA A 69 1 18 HELIX 5 5 GLY A 80 LEU A 83 5 4 HELIX 6 6 LEU A 84 GLY A 95 1 12 HELIX 7 7 PRO A 103 GLN A 116 1 14 HELIX 8 8 THR A 124 ALA A 147 1 24 HELIX 9 9 PRO A 156 MET A 168 1 13 HELIX 10 10 GLY B 14 GLY B 27 1 14 HELIX 11 11 THR B 33 GLY B 42 1 10 HELIX 12 12 THR B 44 GLY B 53 1 10 HELIX 13 13 GLU B 52 ALA B 69 1 18 HELIX 14 14 GLY B 80 LEU B 83 5 4 HELIX 15 15 LEU B 84 GLY B 95 1 12 HELIX 16 16 PRO B 103 GLN B 116 1 14 HELIX 17 17 THR B 124 ALA B 147 1 24 HELIX 18 18 PRO B 156 MET B 168 1 13
SHEET 1 A 5 GLU A 29 ASP A 32 0 SHEET 2 A 5 ARG A 73 ALA A 76 1 N VAL A 74 O GLU A 29 SHEET 3 A 5 PRO A 4 VAL A 8 1 N ILE A 5 O VAL A 75 SHEET 4 A 5 GLY A 95 PHE A 101 1 N THR A 96 O PRO A 4 SHEET 5 A 5 TYR A 149 ASP A 152 1 N TYR A 149 O TYR A 99 SHEET 1 B 5 GLU B 29 ASP B 32 0 SHEET 2 B 5 ARG B 73 ALA B 76 1 N VAL B 74 O GLU B 29 SHEET 3 B 5 PRO B 4 VAL B 8 1 N ILE B 5 O VAL B 75 SHEET 4 B 5 GLY B 95 PHE B 101 1 N THR B 96 O PRO B 4 SHEET 5 B 5 TYR B 149 ASP B 152 1 N TYR B 149 O TYR B 99
SITE 1 AC1 8 ARG A 11 GLY A 12 GLY A 14 MET A 15 SITE 2 AC1 8 THR A 16 HOH A2007 HOH A2011 HOH A2111 SITE 1 AC2 4 ARG A 11 GLY A 79 ARG A 139 MRD A 903 SITE 1 AC3 8 ARG B 11 GLY B 12 GLY B 14 MET B 15 SITE 2 AC3 8 THR B 16 HOH B2005 HOH B2101 HOH B2102 SITE 1 AC4 4 ARG B 11 GLY B 79 ARG B 139 MPD B 901 SITE 1 AC5 6 ALA A 10 LEU A 107 ARG A 110 ARG A 139 SITE 2 AC5 6 CL A 804 HOH A2008 SITE 1 AC6 5 SER A 41 GLY A 42 THR A 44 VAL A 45 SITE 2 AC6 5 PHE A 57 SITE 1 AC7 6 ALA A 108 GLN A 112 ILE A 128 ALA A 129 SITE 2 AC7 6 MET A 132 HOH A2089 SITE 1 AC8 6 ALA B 10 LEU B 107 ARG B 110 ARG B 139 SITE 2 AC8 6 CL B 803 HOH B2103 SITE 1 AC9 5 GLN B 38 SER B 41 GLY B 42 MET B 43 SITE 2 AC9 5 THR B 44 SITE 1 BC1 4 GLN B 112 LEU B 115 GLN B 116 MET B 132
CRYST1 42.860 106.940 42.750 90.00 119.96 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023332 0.000000 0.013447 0.00000
SCALE2 0.000000 0.009351 0.000000 0.00000
SCALE3 0.000000 0.000000 0.026999 0.00000
MTRIX1 1 -0.501760 0.000430 -0.865010 32.16613 1
MTRIX2 1 0.001110 -1.000000 -0.001140 26.49718 1
MTRIX3 1 -0.865010 -0.001530 0.501760 18.53906 1