10 20 30 40 50 60 70 80 1E4N - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 11-JUL-00 1E4N
TITLE CRYSTAL STRUCTURE OF THE INACTIVE MUTANT MONOCOT TITLE 2 (MAIZE ZMGLU1) BETA-GLUCOSIDASE ZMGLU E191D IN COMPLEX WITH TITLE 3 THE NATURAL AGLYCONE DIMBOA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 STRAIN: CV. MUTIN; SOURCE 6 TISSUE: COLEOPTILE; SOURCE 7 ORGANELLE: CHLOROPLAST; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: PLYS S; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21A; SOURCE 12 EXPRESSION_SYSTEM_GENE: GLU1
KEYWDS GLYCOSIDE HYDROLASE, BETA-GLUCOSIDASE, FAMILY 1, RETENTION KEYWDS 2 OF THE ANOMERIC CONFIGURATION, INACTIVE MUTANT E191D, HYDROLASE KEYWDS 3 COMPLEX WITH DIMBOA
EXPDTA X-RAY DIFFRACTION
AUTHOR M.CZJZEK,M.CICEK,D.R.BEVAN,V.ZAMBONI,B.HENRISSAT,A.ESEN
REVDAT 3 21-OCT-15 1E4N 1 HEADER COMPND SOURCE KEYWDS REVDAT 3 2 REMARK VERSN FORMUL REVDAT 2 24-FEB-09 1E4N 1 VERSN REVDAT 1 11-DEC-00 1E4N 0
JRNL AUTH M.CZJZEK,M.CICEK,V.ZAMBONI,D.R.BEVAN,B.HENRISSAT, JRNL AUTH 2 A.ESEN JRNL TITL THE MECHANISM OF SUBSTRATE (AGLYCONE) SPECIFICITY JRNL TITL 2 IN BETA -GLUCOSIDASES IS REVEALED BY CRYSTAL JRNL TITL 3 STRUCTURES OF MUTANT MAIZE BETA -GLUCOSIDASE- JRNL TITL 4 DIMBOA, -DIMBOAGLC, AND -DHURRIN COMPLEXES JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 13555 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 11106394 JRNL DOI 10.1073/PNAS.97.25.13555
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.CICEK,A.ESEN REMARK 1 TITL EXPRESSION OF SOLUBLE AND CATALYTICALLY ACTIVE REMARK 1 TITL 2 PLANT (MONOCOT) BETA-GLUCOSIDASES IN E. COLI REMARK 1 REF BIOTECHNOL.BIOENG. V. 63 392 1999 REMARK 1 REFN REMARK 1 PMID 10099619 REMARK 1 DOI 10.1002/(SICI)1097-0290(19990520)63:4<392::AI REMARK 1 DOI 2 D-BIT2>3.0.CO;2-M
REMARK 2 REMARK 2 RESOLUTION. 2.1 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.1 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.1 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.00 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 58462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2962 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.7 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4873 REMARK 3 BIN R VALUE (WORKING SET) : 0.504 REMARK 3 BIN FREE R VALUE : 0.506 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.6 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.0073 REMARK 3 BOND ANGLES (DEGREES) : 1.36 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.3 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.822 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.3556 REMARK 3 BSOL : 43.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : 0.306 ; 5 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DIMBOA.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DIMBOA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE N- AND C-TERMINAL RESIDUES WERE REMARK 3 NOT SEEN IN THE ELECTRON DENSITY MAPS
REMARK 4 REMARK 4 1E4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-00. REMARK 100 THE PDBE ID CODE IS EBI-5151.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.06800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1E1E REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22 % PEG 4000, 5 % ISOPROPANOL, REMARK 280 0.1 M HEPES PH 7.5
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.78500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN A, B ENGINEERED MUTATION GLU191ASP
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 GLN A 11 REMARK 465 MET A 12 REMARK 465 LYS A 502 REMARK 465 LYS A 503 REMARK 465 PRO A 504 REMARK 465 SER A 505 REMARK 465 LYS A 506 REMARK 465 LYS A 507 REMARK 465 ILE A 508 REMARK 465 LEU A 509 REMARK 465 THR A 510 REMARK 465 PRO A 511 REMARK 465 ALA A 512 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 465 ARG B 3 REMARK 465 VAL B 4 REMARK 465 GLY B 5 REMARK 465 SER B 6 REMARK 465 GLN B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 VAL B 10 REMARK 465 GLN B 11 REMARK 465 MET B 12 REMARK 465 LYS B 502 REMARK 465 LYS B 503 REMARK 465 PRO B 504 REMARK 465 SER B 505 REMARK 465 LYS B 506 REMARK 465 LYS B 507 REMARK 465 ILE B 508 REMARK 465 LEU B 509 REMARK 465 THR B 510 REMARK 465 PRO B 511 REMARK 465 ALA B 512
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 191 OG1 THR A 194 2.14 REMARK 500 OD2 ASP A 191 CB THR A 194 2.06 REMARK 500 OE2 GLU A 406 O HOH A 2192 1.91 REMARK 500 OE1 GLU B 135 O HOH B 2057 2.11 REMARK 500 OG SER B 160 O HOH B 2066 2.01 REMARK 500 O HOH B 2194 O HOH B 2195 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 143 -11.96 76.55 REMARK 500 TYR A 153 22.10 -146.98 REMARK 500 PHE A 156 0.24 -67.44 REMARK 500 ASP A 158 104.45 -32.80 REMARK 500 LYS A 162 -45.91 -137.16 REMARK 500 ARG A 307 -126.16 67.91 REMARK 500 TYR A 333 -41.77 -134.12 REMARK 500 TYR A 382 74.56 -159.93 REMARK 500 ASN A 407 124.73 -172.65 REMARK 500 ASN A 450 31.93 -91.91 REMARK 500 SER A 458 96.96 90.06 REMARK 500 GLU A 464 56.30 -110.86 REMARK 500 TRP A 465 -128.77 49.61 REMARK 500 ASN A 482 76.18 -108.92 REMARK 500 TRP B 143 -10.89 67.93 REMARK 500 ASP B 158 96.77 -38.06 REMARK 500 LYS B 159 -2.33 -59.81 REMARK 500 LYS B 162 -59.28 -134.07 REMARK 500 PRO B 219 50.22 -68.93 REMARK 500 VAL B 225 -51.21 -125.82 REMARK 500 ASN B 285 -60.80 -92.88 REMARK 500 ARG B 307 -129.85 53.57 REMARK 500 PRO B 311 152.04 -49.91 REMARK 500 TYR B 333 -39.08 -130.36 REMARK 500 TYR B 382 73.04 -151.22 REMARK 500 ASN B 407 122.74 -170.65 REMARK 500 LYS B 415 6.67 -67.94 REMARK 500 ASN B 450 37.51 -91.86 REMARK 500 SER B 458 92.55 87.97 REMARK 500 GLU B 464 55.80 -111.81 REMARK 500 TRP B 465 -127.91 48.92 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBO B 514
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CBG RELATED DB: PDB REMARK 900 HYDROLASE (O-GLYCOSYL) REMARK 900 RELATED ID: 1E1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MONOCOT (MAIZE ZMGLU1) REMARK 900 BETA-GLUCOSIDASE REMARK 900 RELATED ID: 1E1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MONOCOT (MAIZE ZMGLU1) REMARK 900 BETA-GLUCOSIDASE IN COMPLEX WITH REMARK 900 P-NITROPHENYL-BETA-D-THIOGLUCOSIDE REMARK 900 RELATED ID: 1E4L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE MUTANT MONOCOT (MAIZE REMARK 900 ZMGLU1) BETA-GLUCOSIDASE ZMGLUE191D REMARK 900 RELATED ID: 1E55 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE MUTANT MONOCOT (MAIZE REMARK 900 ZMGLU1) BETA-GLUCOSIDASE ZMGLUE191D IN COMPLEX WITH THE REMARK 900 COMPETITIVE INHIBITOR DHURRIN REMARK 900 RELATED ID: 1E56 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE INACTIVE MUTANT MONOCOT (MAIZE REMARK 900 ZMGLU1) BETA-GLUCOSIDASE ZMGLUE191D IN COMPLEX WITH THE REMARK 900 NATURAL SUBSTRATE DIMBOA-BETA-D-GLUCOSIDE
DBREF 1E4N A 1 512 UNP P49235 BGLC_MAIZE 55 566 DBREF 1E4N B 1 512 UNP P49235 BGLC_MAIZE 55 566
SEQADV 1E4N ASP A 191 UNP P49235 GLU 245 ENGINEERED MUTATION SEQADV 1E4N ASP B 191 UNP P49235 GLU 245 ENGINEERED MUTATION
SEQRES 1 A 512 SER ALA ARG VAL GLY SER GLN ASN GLY VAL GLN MET LEU SEQRES 2 A 512 SER PRO SER GLU ILE PRO GLN ARG ASP TRP PHE PRO SER SEQRES 3 A 512 ASP PHE THR PHE GLY ALA ALA THR SER ALA TYR GLN ILE SEQRES 4 A 512 GLU GLY ALA TRP ASN GLU ASP GLY LYS GLY GLU SER ASN SEQRES 5 A 512 TRP ASP HIS PHE CYS HIS ASN HIS PRO GLU ARG ILE LEU SEQRES 6 A 512 ASP GLY SER ASN SER ASP ILE GLY ALA ASN SER TYR HIS SEQRES 7 A 512 MET TYR LYS THR ASP VAL ARG LEU LEU LYS GLU MET GLY SEQRES 8 A 512 MET ASP ALA TYR ARG PHE SER ILE SER TRP PRO ARG ILE SEQRES 9 A 512 LEU PRO LYS GLY THR LYS GLU GLY GLY ILE ASN PRO ASP SEQRES 10 A 512 GLY ILE LYS TYR TYR ARG ASN LEU ILE ASN LEU LEU LEU SEQRES 11 A 512 GLU ASN GLY ILE GLU PRO TYR VAL THR ILE PHE HIS TRP SEQRES 12 A 512 ASP VAL PRO GLN ALA LEU GLU GLU LYS TYR GLY GLY PHE SEQRES 13 A 512 LEU ASP LYS SER HIS LYS SER ILE VAL GLU ASP TYR THR SEQRES 14 A 512 TYR PHE ALA LYS VAL CYS PHE ASP ASN PHE GLY ASP LYS SEQRES 15 A 512 VAL LYS ASN TRP LEU THR PHE ASN ASP PRO GLN THR PHE SEQRES 16 A 512 THR SER PHE SER TYR GLY THR GLY VAL PHE ALA PRO GLY SEQRES 17 A 512 ARG CYS SER PRO GLY LEU ASP CYS ALA TYR PRO THR GLY SEQRES 18 A 512 ASN SER LEU VAL GLU PRO TYR THR ALA GLY HIS ASN ILE SEQRES 19 A 512 LEU LEU ALA HIS ALA GLU ALA VAL ASP LEU TYR ASN LYS SEQRES 20 A 512 HIS TYR LYS ARG ASP ASP THR ARG ILE GLY LEU ALA PHE SEQRES 21 A 512 ASP VAL MET GLY ARG VAL PRO TYR GLY THR SER PHE LEU SEQRES 22 A 512 ASP LYS GLN ALA GLU GLU ARG SER TRP ASP ILE ASN LEU SEQRES 23 A 512 GLY TRP PHE LEU GLU PRO VAL VAL ARG GLY ASP TYR PRO SEQRES 24 A 512 PHE SER MET ARG SER LEU ALA ARG GLU ARG LEU PRO PHE SEQRES 25 A 512 PHE LYS ASP GLU GLN LYS GLU LYS LEU ALA GLY SER TYR SEQRES 26 A 512 ASN MET LEU GLY LEU ASN TYR TYR THR SER ARG PHE SER SEQRES 27 A 512 LYS ASN ILE ASP ILE SER PRO ASN TYR SER PRO VAL LEU SEQRES 28 A 512 ASN THR ASP ASP ALA TYR ALA SER GLN GLU VAL ASN GLY SEQRES 29 A 512 PRO ASP GLY LYS PRO ILE GLY PRO PRO MET GLY ASN PRO SEQRES 30 A 512 TRP ILE TYR MET TYR PRO GLU GLY LEU LYS ASP LEU LEU SEQRES 31 A 512 MET ILE MET LYS ASN LYS TYR GLY ASN PRO PRO ILE TYR SEQRES 32 A 512 ILE THR GLU ASN GLY ILE GLY ASP VAL ASP THR LYS GLU SEQRES 33 A 512 THR PRO LEU PRO MET GLU ALA ALA LEU ASN ASP TYR LYS SEQRES 34 A 512 ARG LEU ASP TYR ILE GLN ARG HIS ILE ALA THR LEU LYS SEQRES 35 A 512 GLU SER ILE ASP LEU GLY SER ASN VAL GLN GLY TYR PHE SEQRES 36 A 512 ALA TRP SER LEU LEU ASP ASN PHE GLU TRP PHE ALA GLY SEQRES 37 A 512 PHE THR GLU ARG TYR GLY ILE VAL TYR VAL ASP ARG ASN SEQRES 38 A 512 ASN ASN CYS THR ARG TYR MET LYS GLU SER ALA LYS TRP SEQRES 39 A 512 LEU LYS GLU PHE ASN THR ALA LYS LYS PRO SER LYS LYS SEQRES 40 A 512 ILE LEU THR PRO ALA SEQRES 1 B 512 SER ALA ARG VAL GLY SER GLN ASN GLY VAL GLN MET LEU SEQRES 2 B 512 SER PRO SER GLU ILE PRO GLN ARG ASP TRP PHE PRO SER SEQRES 3 B 512 ASP PHE THR PHE GLY ALA ALA THR SER ALA TYR GLN ILE SEQRES 4 B 512 GLU GLY ALA TRP ASN GLU ASP GLY LYS GLY GLU SER ASN SEQRES 5 B 512 TRP ASP HIS PHE CYS HIS ASN HIS PRO GLU ARG ILE LEU SEQRES 6 B 512 ASP GLY SER ASN SER ASP ILE GLY ALA ASN SER TYR HIS SEQRES 7 B 512 MET TYR LYS THR ASP VAL ARG LEU LEU LYS GLU MET GLY SEQRES 8 B 512 MET ASP ALA TYR ARG PHE SER ILE SER TRP PRO ARG ILE SEQRES 9 B 512 LEU PRO LYS GLY THR LYS GLU GLY GLY ILE ASN PRO ASP SEQRES 10 B 512 GLY ILE LYS TYR TYR ARG ASN LEU ILE ASN LEU LEU LEU SEQRES 11 B 512 GLU ASN GLY ILE GLU PRO TYR VAL THR ILE PHE HIS TRP SEQRES 12 B 512 ASP VAL PRO GLN ALA LEU GLU GLU LYS TYR GLY GLY PHE SEQRES 13 B 512 LEU ASP LYS SER HIS LYS SER ILE VAL GLU ASP TYR THR SEQRES 14 B 512 TYR PHE ALA LYS VAL CYS PHE ASP ASN PHE GLY ASP LYS SEQRES 15 B 512 VAL LYS ASN TRP LEU THR PHE ASN ASP PRO GLN THR PHE SEQRES 16 B 512 THR SER PHE SER TYR GLY THR GLY VAL PHE ALA PRO GLY SEQRES 17 B 512 ARG CYS SER PRO GLY LEU ASP CYS ALA TYR PRO THR GLY SEQRES 18 B 512 ASN SER LEU VAL GLU PRO TYR THR ALA GLY HIS ASN ILE SEQRES 19 B 512 LEU LEU ALA HIS ALA GLU ALA VAL ASP LEU TYR ASN LYS SEQRES 20 B 512 HIS TYR LYS ARG ASP ASP THR ARG ILE GLY LEU ALA PHE SEQRES 21 B 512 ASP VAL MET GLY ARG VAL PRO TYR GLY THR SER PHE LEU SEQRES 22 B 512 ASP LYS GLN ALA GLU GLU ARG SER TRP ASP ILE ASN LEU SEQRES 23 B 512 GLY TRP PHE LEU GLU PRO VAL VAL ARG GLY ASP TYR PRO SEQRES 24 B 512 PHE SER MET ARG SER LEU ALA ARG GLU ARG LEU PRO PHE SEQRES 25 B 512 PHE LYS ASP GLU GLN LYS GLU LYS LEU ALA GLY SER TYR SEQRES 26 B 512 ASN MET LEU GLY LEU ASN TYR TYR THR SER ARG PHE SER SEQRES 27 B 512 LYS ASN ILE ASP ILE SER PRO ASN TYR SER PRO VAL LEU SEQRES 28 B 512 ASN THR ASP ASP ALA TYR ALA SER GLN GLU VAL ASN GLY SEQRES 29 B 512 PRO ASP GLY LYS PRO ILE GLY PRO PRO MET GLY ASN PRO SEQRES 30 B 512 TRP ILE TYR MET TYR PRO GLU GLY LEU LYS ASP LEU LEU SEQRES 31 B 512 MET ILE MET LYS ASN LYS TYR GLY ASN PRO PRO ILE TYR SEQRES 32 B 512 ILE THR GLU ASN GLY ILE GLY ASP VAL ASP THR LYS GLU SEQRES 33 B 512 THR PRO LEU PRO MET GLU ALA ALA LEU ASN ASP TYR LYS SEQRES 34 B 512 ARG LEU ASP TYR ILE GLN ARG HIS ILE ALA THR LEU LYS SEQRES 35 B 512 GLU SER ILE ASP LEU GLY SER ASN VAL GLN GLY TYR PHE SEQRES 36 B 512 ALA TRP SER LEU LEU ASP ASN PHE GLU TRP PHE ALA GLY SEQRES 37 B 512 PHE THR GLU ARG TYR GLY ILE VAL TYR VAL ASP ARG ASN SEQRES 38 B 512 ASN ASN CYS THR ARG TYR MET LYS GLU SER ALA LYS TRP SEQRES 39 B 512 LEU LYS GLU PHE ASN THR ALA LYS LYS PRO SER LYS LYS SEQRES 40 B 512 ILE LEU THR PRO ALA
HET HBO A 514 15 HET HBO B 514 15
HETNAM HBO 2,4-DIHYDROXY-7-(METHYLOXY)-2H-1,4- HETNAM 2 HBO BENZOXAZIN-3(4H)-ONE
HETSYN HBO DIMBOA
FORMUL 3 HBO 2(C9 H9 N O5) FORMUL 5 HOH *436(H2 O)
HELIX 1 1 GLN A 20 PHE A 24 5 5 HELIX 2 2 SER A 35 GLU A 40 1 6 HELIX 3 3 SER A 51 HIS A 60 1 10 HELIX 4 4 PRO A 61 ILE A 64 5 4 HELIX 5 5 ASN A 75 TYR A 80 1 6 HELIX 6 6 MET A 79 GLY A 91 1 13 HELIX 7 7 SER A 100 LEU A 105 1 6 HELIX 8 8 ASN A 115 ASN A 132 1 18 HELIX 9 9 PRO A 146 GLY A 154 1 9 HELIX 10 10 GLY A 155 ASP A 158 5 4 HELIX 11 11 LYS A 162 GLY A 180 1 19 HELIX 12 12 ASP A 191 GLY A 201 1 11 HELIX 13 13 VAL A 225 TYR A 249 1 25 HELIX 14 14 SER A 271 LEU A 286 1 16 HELIX 15 15 LEU A 286 GLY A 296 1 11 HELIX 16 16 PRO A 299 ARG A 307 1 9 HELIX 17 17 GLU A 308 LEU A 310 5 3 HELIX 18 18 LYS A 314 ALA A 322 1 9 HELIX 19 19 LEU A 351 ALA A 356 5 6 HELIX 20 20 TYR A 382 LYS A 396 1 15 HELIX 21 21 PRO A 420 ASN A 426 1 7 HELIX 22 22 ASP A 427 LEU A 447 1 21 HELIX 23 23 GLU A 464 GLY A 468 5 5 HELIX 24 24 LYS A 489 ALA A 501 1 13 HELIX 25 25 GLN B 20 PHE B 24 5 5 HELIX 26 26 SER B 35 GLU B 40 1 6 HELIX 27 27 SER B 51 HIS B 60 1 10 HELIX 28 28 PRO B 61 ILE B 64 5 4 HELIX 29 29 ASN B 75 TYR B 80 1 6 HELIX 30 30 MET B 79 GLY B 91 1 13 HELIX 31 31 SER B 100 LEU B 105 1 6 HELIX 32 32 ASN B 115 ASN B 132 1 18 HELIX 33 33 PRO B 146 GLY B 154 1 9 HELIX 34 34 GLY B 155 ASP B 158 5 4 HELIX 35 35 LYS B 162 GLY B 180 1 19 HELIX 36 36 ASP B 191 GLY B 201 1 11 HELIX 37 37 VAL B 225 TYR B 249 1 25 HELIX 38 38 SER B 271 LEU B 286 1 16 HELIX 39 39 LEU B 286 GLY B 296 1 11 HELIX 40 40 PRO B 299 ARG B 307 1 9 HELIX 41 41 GLU B 308 LEU B 310 5 3 HELIX 42 42 LYS B 314 ALA B 322 1 9 HELIX 43 43 LEU B 351 ALA B 356 5 6 HELIX 44 44 TYR B 382 LYS B 396 1 15 HELIX 45 45 PRO B 420 ASN B 426 1 7 HELIX 46 46 ASP B 427 LEU B 447 1 21 HELIX 47 47 GLU B 464 GLY B 468 5 5 HELIX 48 48 LYS B 489 ALA B 501 1 13
SHEET 1 A 8 MET A 327 TYR A 332 0 SHEET 2 A 8 ARG A 255 VAL A 262 1 N LEU A 258 O MET A 327 SHEET 3 A 8 ASN A 185 LEU A 187 1 N TRP A 186 O ARG A 255 SHEET 4 A 8 GLU A 135 THR A 139 1 N VAL A 138 O ASN A 185 SHEET 5 A 8 ALA A 94 SER A 98 1 N TYR A 95 O GLU A 135 SHEET 6 A 8 THR A 29 ALA A 33 1 N ALA A 32 O ALA A 94 SHEET 7 A 8 VAL A 451 TRP A 457 1 N TYR A 454 O THR A 29 SHEET 8 A 8 ILE A 402 ILE A 404 1 N ILE A 402 O GLN A 452 SHEET 1 B 3 GLY A 264 PRO A 267 0 SHEET 2 B 3 SER A 335 ASN A 340 1 N ARG A 336 O GLY A 264 SHEET 3 B 3 ALA A 358 GLU A 361 -1 N GLU A 361 O PHE A 337 SHEET 1 C 2 VAL A 476 ASP A 479 0 SHEET 2 C 2 THR A 485 MET A 488 -1 N TYR A 487 O TYR A 477 SHEET 1 D 8 MET B 327 TYR B 332 0 SHEET 2 D 8 ARG B 255 VAL B 262 1 N LEU B 258 O MET B 327 SHEET 3 D 8 ASN B 185 LEU B 187 1 N TRP B 186 O ARG B 255 SHEET 4 D 8 GLU B 135 THR B 139 1 N VAL B 138 O ASN B 185 SHEET 5 D 8 ALA B 94 SER B 98 1 N TYR B 95 O GLU B 135 SHEET 6 D 8 THR B 29 ALA B 33 1 N ALA B 32 O ALA B 94 SHEET 7 D 8 VAL B 451 TRP B 457 1 N TYR B 454 O THR B 29 SHEET 8 D 8 ILE B 402 ILE B 404 1 N ILE B 402 O GLN B 452 SHEET 1 E 3 GLY B 264 PRO B 267 0 SHEET 2 E 3 SER B 335 ASN B 340 1 N ARG B 336 O GLY B 264 SHEET 3 E 3 ALA B 358 GLU B 361 -1 N GLU B 361 O PHE B 337 SHEET 1 F 2 VAL B 476 ASP B 479 0 SHEET 2 F 2 THR B 485 MET B 488 -1 N TYR B 487 O TYR B 477
SSBOND 1 CYS A 210 CYS A 216 1555 1555 2.03 SSBOND 2 CYS B 210 CYS B 216 1555 1555 2.04
CISPEP 1 ALA A 206 PRO A 207 0 0.32 CISPEP 2 ALA B 206 PRO B 207 0 0.25
SITE 1 AC1 11 ASP A 191 THR A 194 PHE A 198 TRP A 378 SITE 2 AC1 11 GLU A 464 PHE A 466 ALA A 467 HOH A2079 SITE 3 AC1 11 HOH A2216 HOH A2228 HOH A2229 SITE 1 AC2 11 THR B 194 PHE B 198 TRP B 378 GLU B 464 SITE 2 AC2 11 PHE B 466 ALA B 467 HOH B2076 HOH B2193 SITE 3 AC2 11 HOH B2198 HOH B2205 HOH B2206
CRYST1 91.570 95.310 117.760 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010921 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010492 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008492 0.00000
MTRIX1 1 -0.821280 0.365480 -0.438090 56.63911 1
MTRIX2 1 0.380590 -0.221070 -0.897930 60.43440 1
MTRIX3 1 -0.425020 -0.904190 0.042460 75.64961 1