10 20 30 40 50 60 70 80 1E2I - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 23-MAY-00 1E2I
TITLE THE NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 TITLE 2 THYMIDINE KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS (TYPE 1 / STRAIN SOURCE 3 17); SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TRANSFERASE, ADENINE ANALOG, ENZYME-PRODRUG GENE THERAPY, KEYWDS 2 NUCLEOSIDE- BINDING, THYMIDINE KINASE, X-RAY KEYWDS 3 CRYSTALLOGRAPHY
EXPDTA X-RAY DIFFRACTION
AUTHOR J.VOGT,L.SCAPOZZA,G.E.SCHULZ
REVDAT 3 03-NOV-09 1E2I 1 VERSN REVDAT 2 24-FEB-09 1E2I 1 VERSN REVDAT 1 06-NOV-00 1E2I 0
JRNL AUTH J.VOGT,R.PEROZZO,A.PAUTSCH,A.PROTA,P.SCHELLING, JRNL AUTH 2 B.PILGER,G.FOLKERS,L.SCAPOZZA,G.E.SCHULZ JRNL TITL NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 JRNL TITL 2 THYMIDINE KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY JRNL REF PROTEINS V. 41 545 2000 JRNL REFN ISSN 0887-3585 JRNL PMID 11056041 JRNL DOI 10.1002/1097-0134(20001201)41:4<545::AID-PROT JRNL DOI 2 110>3.0.CO;2-8
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.WILD,T.BOHNER,A.AUBRY,G.FOLKERS,G.E.SCHULZ REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THYMIDINE REMARK 1 TITL 2 KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF FEBS LETT. V. 368 289 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 7628623 REMARK 1 DOI 10.1016/0014-5793(95)00680-8 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.G.BROWN,R.VISSE,G.SANDHU,A.DAVIES,P.J.RIZKALLAH, REMARK 1 AUTH 2 C.MELITZ,W.C.SUMMERS,M.R.SANDERSON REMARK 1 TITL CRYSTAL STRUCTURES OF THE THYMIDINE KINASE FROM REMARK 1 TITL 2 HERPES SIMPLEX VIRUS TYPE-1 IN COMPLEX WITH REMARK 1 TITL 3 DEOXYTHYMIDINE AND GANCICLOVIR REMARK 1 REF NAT.STRUCT.BIOL. V. 2 876 1995 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 7552712 REMARK 1 DOI 10.1038/NSB1095-876
REMARK 2 REMARK 2 RESOLUTION. 1.9 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.9 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 96 REMARK 3 NUMBER OF REFLECTIONS : 54250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2713 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 122 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.16 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.16 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.07 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.4 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.013 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.026 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1E2I COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-00. REMARK 100 THE PDBE ID CODE IS EBI-4483.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8468 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.42500 REMARK 200 R SYM FOR SHELL (I) : 0.42500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1VTK REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES, DTT
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.45000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.45000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.45000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.45000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:THE STRONG CRYSTAL PACKING GENERATED USING X REMARK 300 , 1-Y, -Z GIVESCHAIN A TO CHAIN A (SYMMETRY REMARK 300 RELATED) CONTACTS.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.89 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 64 REMARK 465 THR A 65 REMARK 465 THR A 66 REMARK 465 GLN A 67 REMARK 465 LEU A 68 REMARK 465 LEU A 69 REMARK 465 VAL A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 ALA A 375 REMARK 465 ASN A 376 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 GLN B 221 REMARK 465 ARG B 222 REMARK 465 PRO B 223 REMARK 465 GLY B 224 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 ALA B 375 REMARK 465 ASN B 376
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 265 CB OG1 CG2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 OE1 GLU A 146 NH2 ARG A 247 4565 2.20 REMARK 500 NH2 ARG A 247 OE1 GLU A 146 4565 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 222 CD - NE - CZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 320 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET B 46 CA - CB - CG ANGL. DEV. = 11.4 DEGREES REMARK 500 TYR B 87 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 237 CD - NE - CZ ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG B 247 CA - CB - CG ANGL. DEV. = 22.2 DEGREES REMARK 500 ARG B 247 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 320 CD - NE - CZ ANGL. DEV. = 30.6 DEGREES REMARK 500 ARG B 320 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP B 328 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU B 364 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 90 -49.46 -133.76 REMARK 500 ARG A 163 156.95 82.62 REMARK 500 LEU A 170 -56.98 -159.48 REMARK 500 LEU A 208 134.56 -173.48 REMARK 500 TRP B 88 -71.07 -56.44 REMARK 500 VAL B 90 -69.30 -128.32 REMARK 500 ALA B 93 -179.21 -171.91 REMARK 500 GLU B 146 -174.23 -56.55 REMARK 500 ARG B 163 153.58 80.68 REMARK 500 LEU B 170 -65.08 -149.29 REMARK 500 LEU B 208 125.86 -170.55 REMARK 500 ALA B 218 93.45 -58.40 REMARK 500 LEU B 227 81.34 -68.94 REMARK 500 PHE B 292 30.34 -96.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP B 88 23.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APS A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APS B 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARP B 511
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KIM RELATED DB: PDB REMARK 900 RELATED ID: 1VTK RELATED DB: PDB REMARK 900 RELATED ID: 2VTK RELATED DB: PDB REMARK 900 RELATED ID: 3VTK RELATED DB: PDB REMARK 900 RELATED ID: 1KI2 RELATED DB: PDB REMARK 900 RELATED ID: 1KI4 RELATED DB: PDB REMARK 900 RELATED ID: 1KI5 RELATED DB: PDB REMARK 900 RELATED ID: 1KI6 RELATED DB: PDB REMARK 900 RELATED ID: 1KI7 RELATED DB: PDB REMARK 900 RELATED ID: 1KI8 RELATED DB: PDB REMARK 900 RELATED ID: 1E2J RELATED DB: PDB REMARK 900 RELATED ID: 1E2H RELATED DB: PDB REMARK 900 RELATED ID: 1E2K RELATED DB: PDB REMARK 900 RELATED ID: 1E2L RELATED DB: PDB REMARK 900 RELATED ID: 1E2M RELATED DB: PDB REMARK 900 RELATED ID: 1E2N RELATED DB: PDB REMARK 900 RELATED ID: 1E2P RELATED DB: PDB
DBREF 1E2I A 46 376 UNP P03176 KITH_HSV11 46 376 DBREF 1E2I B 46 376 UNP P03176 KITH_HSV11 46 376
SEQRES 1 A 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 A 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 A 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 A 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 A 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 A 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 A 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 A 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 A 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 A 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 A 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 A 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 A 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 A 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 A 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 A 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 A 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 A 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 A 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 A 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 A 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 A 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 A 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 A 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 A 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 A 331 GLU MET GLY GLU ALA ASN SEQRES 1 B 331 MET PRO THR LEU LEU ARG VAL TYR ILE ASP GLY PRO HIS SEQRES 2 B 331 GLY MET GLY LYS THR THR THR THR GLN LEU LEU VAL ALA SEQRES 3 B 331 LEU GLY SER ARG ASP ASP ILE VAL TYR VAL PRO GLU PRO SEQRES 4 B 331 MET THR TYR TRP ARG VAL LEU GLY ALA SER GLU THR ILE SEQRES 5 B 331 ALA ASN ILE TYR THR THR GLN HIS ARG LEU ASP GLN GLY SEQRES 6 B 331 GLU ILE SER ALA GLY ASP ALA ALA VAL VAL MET THR SER SEQRES 7 B 331 ALA GLN ILE THR MET GLY MET PRO TYR ALA VAL THR ASP SEQRES 8 B 331 ALA VAL LEU ALA PRO HIS ILE GLY GLY GLU ALA GLY SER SEQRES 9 B 331 SER HIS ALA PRO PRO PRO ALA LEU THR LEU ILE PHE ASP SEQRES 10 B 331 ARG HIS PRO ILE ALA ALA LEU LEU CYS TYR PRO ALA ALA SEQRES 11 B 331 ARG TYR LEU MET GLY SER MET THR PRO GLN ALA VAL LEU SEQRES 12 B 331 ALA PHE VAL ALA LEU ILE PRO PRO THR LEU PRO GLY THR SEQRES 13 B 331 ASN ILE VAL LEU GLY ALA LEU PRO GLU ASP ARG HIS ILE SEQRES 14 B 331 ASP ARG LEU ALA LYS ARG GLN ARG PRO GLY GLU ARG LEU SEQRES 15 B 331 ASP LEU ALA MET LEU ALA ALA ILE ARG ARG VAL TYR GLY SEQRES 16 B 331 LEU LEU ALA ASN THR VAL ARG TYR LEU GLN CYS GLY GLY SEQRES 17 B 331 SER TRP ARG GLU ASP TRP GLY GLN LEU SER GLY THR ALA SEQRES 18 B 331 VAL PRO PRO GLN GLY ALA GLU PRO GLN SER ASN ALA GLY SEQRES 19 B 331 PRO ARG PRO HIS ILE GLY ASP THR LEU PHE THR LEU PHE SEQRES 20 B 331 ARG ALA PRO GLU LEU LEU ALA PRO ASN GLY ASP LEU TYR SEQRES 21 B 331 ASN VAL PHE ALA TRP ALA LEU ASP VAL LEU ALA LYS ARG SEQRES 22 B 331 LEU ARG SER MET HIS VAL PHE ILE LEU ASP TYR ASP GLN SEQRES 23 B 331 SER PRO ALA GLY CYS ARG ASP ALA LEU LEU GLN LEU THR SEQRES 24 B 331 SER GLY MET VAL GLN THR HIS VAL THR THR PRO GLY SER SEQRES 25 B 331 ILE PRO THR ILE CYS ASP LEU ALA ARG THR PHE ALA ARG SEQRES 26 B 331 GLU MET GLY GLU ALA ASN
HET SO4 A 400 5 HET SO4 B 400 5 HET APS A 500 28 HET ARP A 502 28 HET APS B 510 28 HET ARP B 511 28
HETNAM SO4 SULFATE ION HETNAM APS 9-HYDROXYPROPYLADENINE, S-ISOMER HETNAM ARP 9-HYDROXYPROPYLADENINE, R-ISOMER
FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 APS 2(C8 H11 N5 O) FORMUL 5 ARP 2(C8 H11 N5 O) FORMUL 7 HOH *221(H2 O)
HELIX 1 1 PRO A 84 VAL A 90 1 7 HELIX 2 2 GLU A 95 GLN A 109 1 15 HELIX 3 3 SER A 113 ALA A 140 1 28 HELIX 4 4 HIS A 164 LEU A 170 1 7 HELIX 5 5 LEU A 170 MET A 179 1 10 HELIX 6 6 THR A 183 LEU A 193 1 11 HELIX 7 7 PRO A 209 ARG A 220 1 12 HELIX 8 8 ASP A 228 CYS A 251 1 24 HELIX 9 9 SER A 254 SER A 263 1 10 HELIX 10 10 HIS A 283 THR A 287 5 5 HELIX 11 11 THR A 287 ARG A 293 5 7 HELIX 12 12 ALA A 294 LEU A 297 5 4 HELIX 13 13 TYR A 305 SER A 321 1 17 HELIX 14 14 SER A 332 THR A 344 1 13 HELIX 15 15 SER A 345 MET A 347 5 3 HELIX 16 16 GLY A 356 GLY A 373 1 18 HELIX 17 17 GLY B 61 ALA B 71 1 11 HELIX 18 18 PRO B 84 VAL B 90 1 7 HELIX 19 19 GLU B 95 GLY B 110 1 16 HELIX 20 20 SER B 113 ALA B 140 1 28 HELIX 21 21 PRO B 165 LEU B 170 1 6 HELIX 22 22 LEU B 170 MET B 179 1 10 HELIX 23 23 THR B 183 LEU B 193 1 11 HELIX 24 24 PRO B 209 ALA B 218 1 10 HELIX 25 25 ASP B 228 CYS B 251 1 24 HELIX 26 26 SER B 254 TRP B 259 1 6 HELIX 27 27 GLY B 260 LEU B 262 5 3 HELIX 28 28 HIS B 283 THR B 287 5 5 HELIX 29 29 THR B 287 ALA B 294 5 8 HELIX 30 30 ALA B 294 LEU B 297 5 4 HELIX 31 31 TYR B 305 SER B 321 1 17 HELIX 32 32 SER B 332 THR B 344 1 13 HELIX 33 33 SER B 345 MET B 347 5 3 HELIX 34 34 GLY B 356 GLY B 373 1 18
SHEET 1 AA 5 ILE A 78 VAL A 81 0 SHEET 2 AA 5 LEU A 157 ASP A 162 1 O THR A 158 N VAL A 79 SHEET 3 AA 5 THR A 48 ILE A 54 1 O THR A 48 N LEU A 157 SHEET 4 AA 5 GLN A 349 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 5 AA 5 ILE A 143 GLY A 148 -1 N GLY A 144 O HIS A 351 SHEET 1 AB 3 ILE A 78 VAL A 81 0 SHEET 2 AB 3 THR A 48 ILE A 54 1 O THR A 48 N LEU A 157 SHEET 1 BA 5 ILE B 78 VAL B 81 0 SHEET 2 BA 5 LEU B 157 ASP B 162 1 O THR B 158 N VAL B 79 SHEET 3 BA 5 THR B 48 ILE B 54 1 O LEU B 50 N LEU B 159 SHEET 4 BA 5 THR B 350 VAL B 352 -1 O THR B 350 N LEU B 49 SHEET 5 BA 5 ILE B 143 GLU B 146 -1 N GLY B 144 O HIS B 351 SHEET 1 BB 3 ILE B 78 VAL B 81 0 SHEET 2 BB 3 THR B 48 ILE B 54 1 O LEU B 50 N LEU B 159
SITE 1 AC1 8 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC1 8 LYS A 62 THR A 63 ARG A 222 HOH A2122 SITE 1 AC2 8 GLY B 59 MET B 60 GLY B 61 LYS B 62 SITE 2 AC2 8 THR B 63 ARG B 216 HOH B2097 HOH B2098 SITE 1 AC3 14 HIS A 58 GLU A 83 TRP A 88 ILE A 97 SITE 2 AC3 14 ILE A 100 GLN A 125 MET A 128 ARG A 163 SITE 3 AC3 14 ALA A 168 TYR A 172 ARG A 222 HOH A2023 SITE 4 AC3 14 HOH A2044 HOH A2123 SITE 1 AC4 15 HIS A 58 GLU A 83 TRP A 88 ILE A 97 SITE 2 AC4 15 ILE A 100 GLN A 125 MET A 128 ARG A 163 SITE 3 AC4 15 ALA A 168 TYR A 172 ARG A 222 HOH A2007 SITE 4 AC4 15 HOH A2023 HOH A2044 HOH A2123 SITE 1 AC5 10 HIS B 58 TRP B 88 GLN B 125 MET B 128 SITE 2 AC5 10 TYR B 132 ARG B 163 ALA B 167 ALA B 168 SITE 3 AC5 10 TYR B 172 GLU B 225 SITE 1 AC6 10 HIS B 58 TRP B 88 GLN B 125 MET B 128 SITE 2 AC6 10 TYR B 132 ARG B 163 ALA B 167 ALA B 168 SITE 3 AC6 10 TYR B 172 GLU B 225
CRYST1 113.000 116.900 108.000 90.00 90.00 90.00 C 2 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008850 0.000000 0.000000 0.00000
SCALE2 0.000000 0.008554 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009259 0.00000
MTRIX1 1 -0.929930 -0.312660 -0.193560 74.60172 1
MTRIX2 1 -0.319110 0.424560 0.847300 22.24124 1
MTRIX3 1 -0.182740 0.849700 -0.494590 -9.82225 1