1E16 - Header Asymmetric Unit

HEADER HYDROLASE 23-APR-00 1E16

TITLE BETA SUBUNIT OF MITOCHONDRIAL F1-ATPASE FROM SORGHUM LINE TITLE 2 CS3541 FERTILITY RESTORER OF A1-MALE STERILE CYTOPLASM

COMPND MOL_ID: 1; COMPND 2 MOLECULE: F1-ATP SYNTHASE, BETA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATPB, ATP2, ATPB; COMPND 5 EC: 3.6.1.34

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SORGHUM BICOLOR; SOURCE 3 ORGANISM_COMMON: SORGHUM; SOURCE 4 STRAIN: CV. CS3541; SOURCE 5 ATCC: CS3541; SOURCE 6 TISSUE: COLEOPTILE; SOURCE 7 ORGANELLE: MITOCHONDRIA; SOURCE 8 CELLULAR_LOCATION: MITOCHONDRIA; SOURCE 9 OTHER_DETAILS: THE SEUQUENCE WAS DEDUCED FROM THE CDNA AND SOURCE 10 LATER SUPERIMPOSED AS CLOSE FIT ON THE BETA SUBUNIT OF THE SOURCE 11 EXISTING MODELS VIZ PDB ID 1MAB, 1BMFE, 1BMFD, 1BMFF, 1COW

KEYWDS ATPB, ATPB, F1-ATPSYNTHASE, MITOCHONDRIA, SORGHUM,

EXPDTA THEORETICAL MODEL

AUTHOR P.JAISWAL

REVDAT 1 23-MAY-00 1E16 0

JRNL AUTH P.JAISWAL JRNL TITL BETA SUBUNIT OF MITOCHONDRIAL F1-ATPASE FROM JRNL TITL 2 SORGHUM LINE CS3541 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.JAISWAL REMARK 1 REF NUCLEAR MITOCHONDRIAL 1998 REMARK 1 REF 2 INTERACTIONS INVOLVED IN REMARK 1 REF 3 THE CYTOPLASMIC MALE REMARK 1 REF 4 STERILITY I SORGHUM REMARK 1 PUBL LUCKNOW : LUCKNOW, UNIVERSITY, INDIA REMARK 1 REFN IN

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIS MODEL IS BASED UPON THE REMARK 3 COORDINATES PDB ENTRIES, 1MAB RAT LIVER F1-ATPASE 1BMF BOVINE REMARK 3 MITOCHONDRIAL F1-ATPASE 1COW BOVINE MITOCHONDRIAL F1-ATPASE REMARK 3 COMPLEXED WITH AUROVERTIN B

REMARK 4 REMARK 4 1E16 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 11-MAY-2000. REMARK 100 THE EBI ID CODE IS EBI-4874.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: ALIGNED SEQUENCE WAS SUPERIMPOSED ON THE KNOWN REMARK 220 STRUCTURE OF 1MAB

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 82 CG LEU A 82 CD1 -0.089 REMARK 500 ALA A 314 CA ALA A 314 CB -0.143 REMARK 500 ASP A 323 CG ASP A 323 OD1 -0.136 REMARK 500 GLN A 378 CD GLN A 378 NE2 -0.174 REMARK 500 ILE A 380 C ILE A 380 O -0.108 REMARK 500 PHE A 406 CG PHE A 406 CD2 -0.126 REMARK 500 PHE A 406 CG PHE A 406 CD1 -0.099 REMARK 500 PHE A 406 CZ PHE A 406 CE2 -0.114 REMARK 500 GLN A 409 CD GLN A 409 NE2 -0.104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 82 CA - CB - CG ANGL. DEV. =-16.0 DEGREES REMARK 500 GLU A 159 OE1 - CD - OE2 ANGL. DEV. = 18.4 DEGREES REMARK 500 LEU A 227 CD1 - CG - CD2 ANGL. DEV. =-17.3 DEGREES REMARK 500 ALA A 314 N - CA - CB ANGL. DEV. =-18.9 DEGREES REMARK 500 MET A 350 CG - SD - CE ANGL. DEV. =-16.0 DEGREES REMARK 500 GLN A 378 CG - CD - OE1 ANGL. DEV. = 17.1 DEGREES REMARK 500 ILE A 381 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 THR A 418 OG1 - CB - CG2 ANGL. DEV. =-15.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 202 -40.60 110.12 REMARK 500 LEU A 384 -36.20 65.55 REMARK 500 ASP A 387 -105.00 45.01 REMARK 500 THR A 418 0.78 147.65 REMARK 500 LYS A 432 -36.65 64.36 REMARK 500 TYR A 442 -15.79 144.85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 201 LYS A 202 84.80

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MAB RELATED DB: PDB REMARK 900 RAT LIVER F1-ATPASE REMARK 900 RELATED ID: 1E1I RELATED DB: PDB REMARK 900 BETA SUBUNIT OF MITOCHONDRIAL F1-ATPASE FROM SORGHUM LINE REMARK 900 2077A (CONTAINS A1-TYPE CYTOPLASMIC MALE STERILE CYTOPLASM)

DBREF 1E16 A 1 454 UNP O24346 O24346 1 454

SEQRES 1 A 454 ILE GLY GLN VAL CYS GLN VAL ILE GLY ALA VAL VAL ASP SEQRES 2 A 454 VAL ARG PHE ASP GLU GLY LEU PRO PRO ILE LEU THR ALA SEQRES 3 A 454 LEU GLU VAL LEU ASP ASN ASN ILE ARG LEU VAL LEU GLU SEQRES 4 A 454 VAL ALA GLN HIS LEU GLY GLU ASN MET VAL ARG THR ILE SEQRES 5 A 454 ALA MET ASP GLY THR GLU GLY LEU VAL ARG GLY GLN ARG SEQRES 6 A 454 VAL LEU ASN THR GLY SER PRO ILE THR VAL PRO VAL GLY SEQRES 7 A 454 ARG ALA THR LEU GLY ARG ILE ILE ASN VAL ILE GLY GLU SEQRES 8 A 454 PRO ILE ASP GLU ARG GLY ASP ILE THR THR ASN HIS PHE SEQRES 9 A 454 LEU PRO ILE HIS ARG GLU ALA PRO ALA PHE VAL GLU GLN SEQRES 10 A 454 ALA THR GLU GLN GLN ILE LEU VAL THR GLY ILE LYS VAL SEQRES 11 A 454 VAL ASP LEU LEU ALA PRO TYR GLN ARG GLY GLY LYS ILE SEQRES 12 A 454 GLY LEU PHE GLY GLY ALA GLY VAL GLY LYS THR VAL LEU SEQRES 13 A 454 ILE MET GLU LEU ILE ASN ASN VAL ALA LYS ALA HIS GLY SEQRES 14 A 454 GLY PHE SER VAL PHE ALA GLY VAL GLY GLU ARG THR ARG SEQRES 15 A 454 GLU GLY ASN ASP LEU TYR ARG GLU MET ILE GLU SER GLY SEQRES 16 A 454 VAL ILE LYS LEU GLY ASP LYS GLN SER GLU SER LYS CYS SEQRES 17 A 454 ALA LEU VAL TYR GLY GLN MET ASN GLU PRO PRO GLY ALA SEQRES 18 A 454 ARG ALA ARG VAL GLY LEU THR GLY LEU THR VAL ALA GLU SEQRES 19 A 454 HIS PHE ARG ASP ALA GLU GLY GLN ASP VAL LEU LEU PHE SEQRES 20 A 454 ILE ASP ASN ILE PHE ARG PHE THR GLN ALA ASN SER GLU SEQRES 21 A 454 VAL SER ALA LEU LEU GLY ARG ILE PRO SER ALA VAL GLY SEQRES 22 A 454 TYR GLN PRO THR LEU ALA THR ASP LEU GLY GLY LEU GLN SEQRES 23 A 454 GLU ARG ILE THR THR THR LYS LYS GLY SER ILE THR SER SEQRES 24 A 454 VAL GLN ALA ILE TYR VAL PRO ALA ASP ASP LEU THR ASP SEQRES 25 A 454 PRO ALA PRO ALA THR THR TYR ALA HIS LEU ASP ALA THR SEQRES 26 A 454 THR VAL LEU SER ARG GLN ILE SER GLU ARG GLY ILE TYR SEQRES 27 A 454 PRO ALA VAL ASP PRO LEU ASP SER THR SER ARG MET LEU SEQRES 28 A 454 SER PRO HIS VAL LEU GLY GLU ASP HIS TYR ASN THR ALA SEQRES 29 A 454 ARG GLY VAL GLN LYS VAL LEU GLN LYS TYR LYS ASN LEU SEQRES 30 A 454 GLN ASP ILE ILE ALA ILE LEU GLY MET ASP GLU LEU SER SEQRES 31 A 454 GLU ASP ASP LYS LEU THR VAL ALA ARG ALA ARG LYS ILE SEQRES 32 A 454 GLN ARG PHE LEU SER GLN PRO PHE HIS VAL ALA GLU VAL SEQRES 33 A 454 PHE THR GLY ALA PRO GLY LYS TYR VAL GLU LEU LYS GLU SEQRES 34 A 454 SER VAL LYS SER PHE GLN GLY VAL LEU ASP GLY LYS TYR SEQRES 35 A 454 ASP ASP LEU PRO ALA GLN SER PHE TYR MET VAL GLY

HELIX 1 1 GLY A 78 LEU A 82 5 5 HELIX 2 2 ALA A 113 GLN A 117 5 5 HELIX 3 3 ILE A 128 ALA A 135 1 8 HELIX 4 4 GLY A 152 VAL A 164 1 13 HELIX 5 5 ARG A 180 SER A 194 1 15 HELIX 6 6 PRO A 218 ALA A 239 1 22 HELIX 7 7 ILE A 251 ALA A 263 1 13 HELIX 8 8 LEU A 264 GLY A 266 5 3 HELIX 9 9 SER A 270 TYR A 274 5 5 HELIX 10 10 THR A 277 GLU A 287 1 11 HELIX 11 11 PRO A 306 ASP A 309 5 4 HELIX 12 12 ASP A 312 TYR A 319 1 8 HELIX 13 13 ALA A 320 LEU A 322 5 3 HELIX 14 14 SER A 329 ARG A 335 1 7 HELIX 15 15 SER A 352 GLY A 357 1 6 HELIX 16 16 GLY A 357 ILE A 380 1 24 HELIX 17 17 SER A 390 LEU A 407 1 18 HELIX 18 18 PHE A 411 THR A 418 5 8 HELIX 19 19 GLU A 426 SER A 430 5 5 HELIX 20 20 LYS A 432 GLY A 440 1 9 HELIX 21 21 PRO A 446 TYR A 451 5 6

SHEET 1 A 7 GLY A 2 ILE A 8 0 SHEET 2 A 7 ARG A 65 SER A 71 0 SHEET 3 A 7 ALA A 26 VAL A 29 0 SHEET 4 A 7 VAL A 37 GLY A 45 -1 O LEU A 38 N LEU A 27 SHEET 5 A 7 MET A 48 ALA A 53 -1 O MET A 48 N GLY A 45 SHEET 6 A 7 VAL A 11 PHE A 16 -1 O VAL A 12 N THR A 51 SHEET 7 A 7 GLY A 2 ILE A 8 -1 O GLN A 3 N ARG A 15 SHEET 1 B 2 THR A 74 VAL A 77 0 SHEET 2 B 2 HIS A 103 PRO A 106 -1 O HIS A 103 N VAL A 77 SHEET 1 C 7 ILE A 85 ILE A 86 0 SHEET 2 C 7 CYS A 208 GLY A 213 1 O LEU A 210 N ILE A 86 SHEET 3 C 7 SER A 172 VAL A 177 1 O SER A 172 N ALA A 209 SHEET 4 C 7 ASP A 243 ASP A 249 1 O LEU A 245 N VAL A 173 SHEET 5 C 7 SER A 296 TYR A 304 1 O SER A 296 N VAL A 244 SHEET 6 C 7 LYS A 142 GLY A 147 1 O ILE A 143 N GLN A 301 SHEET 7 C 7 ALA A 324 VAL A 327 1 O ALA A 324 N GLY A 144

CISPEP 1 ASP A 249 ASN A 250 0 0.02 CISPEP 2 TYR A 338 PRO A 339 0 -1.09

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000