10 20 30 40 50 60 70 80 1DWJ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 05-DEC-99 1DWJ
TITLE STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REFINED PART 6: TITLE 2 STRUCTURE AFTER A RADIATION DOSE OF 54*10E15 PHOTONS/MM2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYROSINASE MA1; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: RESIDUES 3-501; COMPND 5 SYNONYM: THIOGLUCOSIDE GLUCOHYDROLASE, SINIGRINASE, THIOGLUCOSIDASE; COMPND 6 EC: 3.2.1.147; COMPND 7 OTHER_DETAILS: AFTER IRRADIATION WITH 54*10E15 PHOTONS/MM2
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 STRAIN: EMERGO; SOURCE 6 ORGAN: SEED; SOURCE 7 CELL: MYROSIN CELLS; SOURCE 8 CELLULAR_LOCATION: MYROSIN GRAINS
KEYWDS GLYCOSIDASE, RADIATION DAMAGE, RADIOLYSIS, CRYO-COOLED, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR W.P.BURMEISTER
REVDAT 4 27-JUL-11 1DWJ 1 TITLE COMPND KEYWDS JRNL REVDAT 4 2 REMARK DBREF SEQADV HET REVDAT 4 3 HETSYN FORMUL LINK SITE REVDAT 4 4 HETATM CONECT MASTER VERSN REVDAT 3 02-JUN-09 1DWJ 1 HEADER KEYWDS REMARK SEQADV REVDAT 2 24-FEB-09 1DWJ 1 VERSN REVDAT 1 03-MAR-00 1DWJ 0
JRNL AUTH W.P.BURMEISTER JRNL TITL STRUCTURAL CHANGES IN A CRYO-COOLED PROTEIN CRYSTAL DUE TO JRNL TITL 2 RADIATION DAMAGE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 328 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10713520 JRNL DOI 10.1107/S0907444999016261
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.P.BURMEISTER,S.COTTAZ,H.DRIGUEZ,R.IORI,S.PALMIERI, REMARK 1 AUTH 2 B.HENRISSAT REMARK 1 TITL THE CRYSTAL STRUCTURES OF SINAPIS ALBA MYROSINASE AND A REMARK 1 TITL 2 COVALENT GLYCOSYL-ENZYME INTERMEDIATE PROVIDE INSIGHTS INTO REMARK 1 TITL 3 THE SUBSTRATE RECOGNITION AND ACTIVE-SIDE MACHINERY OF AN REMARK 1 TITL 4 S-GLYCOSIDASE REMARK 1 REF STRUCTURE V. 5 663 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9195886 REMARK 1 DOI 10.1016/S0969-2126(97)00221-9
REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000. REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.0063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2750 REMARK 3 BIN R VALUE (WORKING SET) : 0.306 REMARK 3 BIN FREE R VALUE : 0.320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5. REMARK 3 BIN FREE R VALUE TEST SET COUNT : 164 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 349 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.024 REMARK 3 BOND ANGLES (DEGREES) : 1.613 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.1 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.3 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.8 ; 1.5 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.9 ; 2.0 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.8 ; 2.0 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.9 ; 2.5 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AN OVERALL TEMPERATURE FACTOR REMARK 3 REFINEMENT, A POSITIONAL REFINEMENT AND AN OCCUPANCY REMARK 3 REFINEMENT HAVE BEEN USED. THE MODEL IS NOT SUPPOSED TO BE REMARK 3 USED AS A MODEL OF MYROSINASE. A MODEL REPLACING ENTRY 1MYR REMARK 3 WILL BE DEPOSITED LATER. NO COORDINATES ARE GIVEN FOR RESIDUES REMARK 3 1 - 2. PRO 501 IS THE LAST RESIDUE SEEN IN ELECTRON DENSITY. REMARK 3 THE PROTEIN COULD EXTEND BEYOND PRO 501. THE OCCUPANCY OF REMARK 3 CERTAIN GROUPS WHICH ARE SENSITIVE TO RADIATION DAMAGE HAVE REMARK 3 BEEN REFINED. DUE TO THIS REFINEMENT OCCUPANCIES DIFFERENT TO REMARK 3 OR EVEN GREATER THAN 1.0 ARE PRESENT IN THE STRUCTURE.
REMARK 4 REMARK 4 1DWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-99. REMARK 100 THE PDBE ID CODE IS EBI-4444.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9475 REMARK 200 MONOCHROMATOR : C(111), GE(220) REMARK 200 OPTICS : BENT MULTILAYER MIRROR, REMARK 200 SAGITALLY FOCUSING CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.95800 REMARK 200 R SYM FOR SHELL (I) : 0.95800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.843 REMARK 200 STARTING MODEL: PDB ENTRY 1DWI REMARK 200 REMARK 200 REMARK: DOSE 0.1*10E15 PHOTONS/MM2 USED FOR DATA COLLECTION, I/ REMARK 200 SIGMA VALUES ARE STRONGLY AFFECTED BY A FEW ZINGERS ON THE REMARK 200 DETECTOR
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD, 12 MG/ML REMARK 280 PROTEIN IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66% REMARK 280 SATURATED AMMONIUM SULFATE, 100MM TRIS-HCL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -223.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.45000
REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS STRUCTURE HAS BEEN REFINED AGAINS DATA COLLECTED ON A REMARK 400 MYROSINASE CRYSTAL WHICH HAS BEEN EXPOSED TO A DOSE OF REMARK 400 54*10E15 PHOTONS/MM2. THE DISULPHIDE BRIDGES ARE ASSUMED TO REMARK 400 BE BROKEN DUE TO THE RADIATION DAMAGE. THE STRUCTURE IS REMARK 400 RELATED TO ENTRY 1DWI, BUT THERE HAS BEEN AN ADDITIONAL REMARK 400 POSITIONAL REFINEMENT.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS M 375 O HOH M 2534 1.21 REMARK 500 OD2 ASP M 431 O HOH M 2616 1.32 REMARK 500 O PHE M 12 O HOH M 2021 1.39 REMARK 500 CE2 TYR M 427 O HOH M 2606 1.44 REMARK 500 CD2 HIS M 365 O HOH M 2512 1.47 REMARK 500 C1 GOL M 1010 O HOH M 3095 1.47 REMARK 500 O6 MAN M 957 O HOH M 3053 1.55 REMARK 500 CE LYS M 375 O HOH M 2534 1.58 REMARK 500 OD1 ASP M 431 O HOH M 2612 1.63 REMARK 500 O HOH M 2612 O HOH M 2615 1.63 REMARK 500 O TYR M 215 O HOH M 2342 1.64 REMARK 500 CG2 THR M 379 O HOH M 2542 1.71 REMARK 500 CA GLY M 15 O HOH M 2027 1.72 REMARK 500 O HOH M 2052 O HOH M 2054 1.76 REMARK 500 O HOH M 2536 O HOH M 2537 1.86 REMARK 500 O4 MAN M 957 O HOH M 3053 1.90 REMARK 500 NE2 HIS M 365 O HOH M 2512 1.93 REMARK 500 OD2 ASP M 70 O HOH M 2114 1.96 REMARK 500 C6 MAN M 957 O HOH M 3055 1.98 REMARK 500 OD2 ASP M 150 O HOH M 2270 2.00 REMARK 500 O2 GOL M 1010 O HOH M 3095 2.01 REMARK 500 O HOH M 3057 O HOH M 3058 2.01 REMARK 500 CZ TYR M 427 O HOH M 2606 2.02 REMARK 500 O HOH M 3066 O HOH M 3067 2.02 REMARK 500 C GLY M 15 O HOH M 2027 2.03 REMARK 500 C2 GOL M 1010 O HOH M 3095 2.03 REMARK 500 CG ASP M 431 O HOH M 2616 2.05 REMARK 500 O HOH M 2608 O HOH M 2610 2.06 REMARK 500 O HOH M 2027 O HOH M 2029 2.08 REMARK 500 C6 NAG M 961 O HOH M 3056 2.14 REMARK 500 OH TYR M 215 O HOH M 2341 2.15 REMARK 500 NZ LYS M 373 O HOH M 2528 2.15 REMARK 500 O4 FUC M 952 O HOH M 3040 2.18 REMARK 500 OH TYR M 427 O HOH M 2606 2.18 REMARK 500 C6 MAN M 957 O HOH M 3053 2.18 REMARK 500 O HOH M 2089 O HOH M 3099 2.18 REMARK 500 O4 NAG M 953 O5 BMA M 954 2.19 REMARK 500 CG HIS M 365 O HOH M 2512 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG PRO M 11 O HOH M 2511 4576 2.11 REMARK 500 N GLY M 45 O ARG M 57 3656 1.90 REMARK 500 CD ARG M 106 OE2 GLU M 153 3656 2.07 REMARK 500 NE ARG M 106 OE2 GLU M 153 3656 2.17 REMARK 500 CG LYS M 373 NZ LYS M 373 4576 2.02 REMARK 500 CD LYS M 373 NZ LYS M 373 4576 1.78 REMARK 500 CE LYS M 373 CE LYS M 373 4576 1.66 REMARK 500 CE LYS M 373 NZ LYS M 373 4576 2.18 REMARK 500 ZN ZN M 1001 ZN ZN M 1001 3656 1.10 REMARK 500 O HOH M 2010 O HOH M 2505 4576 1.43 REMARK 500 O HOH M 2017 O HOH M 2017 4576 1.63 REMARK 500 O HOH M 2017 O HOH M 2018 4576 2.12 REMARK 500 O HOH M 2058 O HOH M 2106 3656 2.02 REMARK 500 O HOH M 2108 O HOH M 2124 3656 1.83 REMARK 500 O HOH M 2173 O HOH M 2365 6564 1.92 REMARK 500 O HOH M 2210 O HOH M 2339 3656 2.09 REMARK 500 O HOH M 2238 O HOH M 2613 4576 1.96 REMARK 500 O HOH M 2240 O HOH M 2240 4576 1.76 REMARK 500 O HOH M 2241 O HOH M 2523 4576 1.67 REMARK 500 O HOH M 2252 O HOH M 2252 4576 1.63 REMARK 500 O HOH M 2272 O HOH M 2272 3656 1.10 REMARK 500 O HOH M 2408 O HOH M 3103 6564 1.63 REMARK 500 O HOH M 2546 O HOH M 2546 4576 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR M 72 -127.59 36.96 REMARK 500 HIS M 141 60.19 -111.99 REMARK 500 TRP M 142 -12.50 73.74 REMARK 500 TYR M 152 26.90 -147.09 REMARK 500 THR M 184 -70.72 -71.26 REMARK 500 GLN M 187 87.40 39.09 REMARK 500 ASN M 466 -3.89 70.64 REMARK 500 ASN M 482 98.06 -163.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR M 94 0.08 SIDE CHAIN REMARK 500 TYR M 215 0.07 SIDE CHAIN REMARK 500 TYR M 401 0.09 SIDE CHAIN REMARK 500 TYR M 463 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER M 97 10.32 REMARK 500 GLU M 446 11.00 REMARK 500 ASN M 482 -10.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER M 338 55.9 L L OUTSIDE RANGE REMARK 500 TYR M 366 21.2 L L OUTSIDE RANGE REMARK 500 VAL M 449 24.2 L L OUTSIDE RANGE REMARK 500 ILE M 360 -2.5 S R CBETA WRONG HAND REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 56 NE2 REMARK 620 2 HIS M 56 NE2 90.9 REMARK 620 3 ASP M 70 OD2 126.5 93.4 REMARK 620 4 ASP M 70 OD2 89.7 165.8 74.9 REMARK 620 5 ASP M 70 OD1 72.9 125.5 138.3 68.1 REMARK 620 N 1 2 3 4
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 931 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 961 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 971 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAG M 991 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN M1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M1020 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M1021 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M1023 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M1024 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M REMARK 800 218 RESIDUES 921 TO 923 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M REMARK 800 265 RESIDUES 941 TO 945 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M REMARK 800 292 RESIDUES 951 TO 957 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN M OF SUGAR BOUND TO ASN M REMARK 800 361 RESIDUES 981 TO 983
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MYR RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA REMARK 900 RELATED ID: 1DWA RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REMARK 900 PART 1: STRUCTURE PRIOR TO IRRADIATION REMARK 900 RELATED ID: 1DWF RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REMARK 900 PART 2: STRUCTURE AFTER IRRADIATION WITH 9.1*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWG RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL: REMARK 900 PART 3: STRUCTURE AFTER IRRADIATION WITH 18.2*10E15 PHOTONS/MM2. REMARK 900 RELATED ID: 1DWH RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REMARK 900 PART 4: STRUCTURE AFTER IRRADIATION WITH 27.2*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWI RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REMARK 900 PART 5: STRUCTURE AFTER IRRADIATION WITH 54.0*10E15 PHOTONS/MM2
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE SOME DISCREPANCIES IN THE SEQUENCE COMPARED TO REMARK 999 ENTRY 1MYR AS THE X-RAY SEQUENCE HAS BEEN CORRECTED WHEN REMARK 999 HIGHER RESOLUTION DATA (1.2 A) BECAME AVAILABLE. REMARK 999 REMARK 999 THE SEQUENCE OF 1MYR (DETERMINED FROM THE X-RAY STRUCTURE) IS REMARK 999 ESSENTIALLY IDENTICAL TO A PARTIAL SEQUENCE OF A MYROSINASE REMARK 999 FROM SINAPIS ALBA (SWISS-PROT P29736). THE NUCLEOTIDE SEQUENCE REMARK 999 OF THE GENE ENCODING THE CRYSTALLIZED ENZYME WAS NOT DETERMINED. REMARK 999 SIGNIFICANT DIFFERENCES BEYOND THE UNCERTAINTY OF A SEQUENCE REMARK 999 DETERMINED FROM A CRYSTAL STRUCTURE SHOW THAT THE ISOENZYME REMARK 999 WHICH IS PRESENT IN THE DEPOSITORS' CRYSTALS IS DIFFERENT FROM REMARK 999 THAT WHOSE PARTIAL SEQUENCE IS KNOWN. THE DEPOSITORS' SEQUENCE REMARK 999 IS ABOUT 70% IDENTICAL TO THE ONLY KNOWN FULL-LENGTH SEQUENCE REMARK 999 OF ANOTHER MYROSINASE ISOZYME FROM SINAPIS ALBA (SWISS-PROT REMARK 999 P29092). ALL KNOWN MYROSINASE SEQUENCES (FROM SINAPSIS ALBA REMARK 999 OR FROM OTHER CRUCIFERAE) ARE LONGER THAN 1MYR AT THEIR REMARK 999 C-TERMINUS BY APPROXIMATELY 25 RESIDUES. IT IS THEREFORE REMARK 999 POSSIBLE THAT THE SEQUENCE OF 1MYR IS ACTUALLY LONGER THAN THAT REMARK 999 SEEN IN THE X-RAY STRUCTURE.
DBREF 1DWJ M 3 501 UNP P29736 MYRA_SINAL 3 501
SEQADV 1DWJ THR M 497 UNP P29736 SER 497 SEE REMARK 999
SEQRES 1 M 499 GLU ILE THR CYS GLN GLU ASN LEU PRO PHE THR CYS GLY SEQRES 2 M 499 ASN THR ASP ALA LEU ASN SER SER SER PHE SER SER ASP SEQRES 3 M 499 PHE ILE PHE GLY VAL ALA SER SER ALA TYR GLN ILE GLU SEQRES 4 M 499 GLY THR ILE GLY ARG GLY LEU ASN ILE TRP ASP GLY PHE SEQRES 5 M 499 THR HIS ARG TYR PRO ASN LYS SER GLY PRO ASP HIS GLY SEQRES 6 M 499 ASN GLY ASP THR THR CYS ASP SER PHE SER TYR TRP GLN SEQRES 7 M 499 LYS ASP ILE ASP VAL LEU ASP GLU LEU ASN ALA THR GLY SEQRES 8 M 499 TYR ARG PHE SER ILE ALA TRP SER ARG ILE ILE PRO ARG SEQRES 9 M 499 GLY LYS ARG SER ARG GLY VAL ASN GLU LYS GLY ILE ASP SEQRES 10 M 499 TYR TYR HIS GLY LEU ILE SER GLY LEU ILE LYS LYS GLY SEQRES 11 M 499 ILE THR PRO PHE VAL THR LEU PHE HIS TRP ASP LEU PRO SEQRES 12 M 499 GLN THR LEU GLN ASP GLU TYR GLU GLY PHE LEU ASP PRO SEQRES 13 M 499 GLN ILE ILE ASP ASP PHE LYS ASP TYR ALA ASP LEU CYS SEQRES 14 M 499 PHE GLU GLU PHE GLY ASP SER VAL LYS TYR TRP LEU THR SEQRES 15 M 499 ILE ASN GLN LEU TYR SER VAL PRO THR ARG GLY TYR GLY SEQRES 16 M 499 SER ALA LEU ASP ALA PRO GLY ARG CYS SER PRO THR VAL SEQRES 17 M 499 ASP PRO SER CYS TYR ALA GLY ASN SER SER THR GLU PRO SEQRES 18 M 499 TYR ILE VAL ALA HIS HIS GLN LEU LEU ALA HIS ALA LYS SEQRES 19 M 499 VAL VAL ASP LEU TYR ARG LYS ASN TYR THR HIS GLN GLY SEQRES 20 M 499 GLY LYS ILE GLY PRO THR MET ILE THR ARG TRP PHE LEU SEQRES 21 M 499 PRO TYR ASN ASP THR ASP ARG HIS SER ILE ALA ALA THR SEQRES 22 M 499 GLU ARG MET LYS GLU PHE PHE LEU GLY TRP PHE MET GLY SEQRES 23 M 499 PRO LEU THR ASN GLY THR TYR PRO GLN ILE MET ILE ASP SEQRES 24 M 499 THR VAL GLY GLU ARG LEU PRO SER PHE SER PRO GLU GLU SEQRES 25 M 499 SER ASN LEU VAL LYS GLY SER TYR ASP PHE LEU GLY LEU SEQRES 26 M 499 ASN TYR TYR PHE THR GLN TYR ALA GLN PRO SER PRO ASN SEQRES 27 M 499 PRO VAL ASN SER THR ASN HIS THR ALA MET MET ASP ALA SEQRES 28 M 499 GLY ALA LYS LEU THR TYR ILE ASN ALA SER GLY HIS TYR SEQRES 29 M 499 ILE GLY PRO LEU PHE GLU LYS ASP LYS ALA ASP SER THR SEQRES 30 M 499 ASP ASN ILE TYR TYR TYR PRO LYS GLY ILE TYR SER VAL SEQRES 31 M 499 MET ASP TYR PHE LYS ASN LYS TYR TYR ASN PRO LEU ILE SEQRES 32 M 499 TYR VAL THR GLU ASN GLY ILE SER THR PRO GLY ASP GLU SEQRES 33 M 499 ASN ARG ASN GLN SER MET LEU ASP TYR THR ARG ILE ASP SEQRES 34 M 499 TYR LEU CYS SER HIS LEU CYS PHE LEU ASN LYS VAL ILE SEQRES 35 M 499 LYS GLU LYS ASP VAL ASN VAL LYS GLY TYR LEU ALA TRP SEQRES 36 M 499 ALA LEU GLY ASP ASN TYR GLU PHE ASN LYS GLY PHE THR SEQRES 37 M 499 VAL ARG PHE GLY LEU SER TYR ILE ASP TRP ASN ASN VAL SEQRES 38 M 499 THR ASP ARG ASP LEU LYS LYS SER GLY GLN TRP TYR GLN SEQRES 39 M 499 THR PHE ILE SER PRO
HET NAG M 901 14 HET NAG M 911 14 HET NAG M 921 14 HET NAG M 923 14 HET NAG M 931 14 HET NAG M 941 14 HET FUC M 942 10 HET NAG M 943 14 HET BMA M 944 11 HET XYP M 945 9 HET NAG M 951 14 HET FUC M 952 10 HET NAG M 953 14 HET BMA M 954 11 HET XYP M 955 9 HET MAN M 956 11 HET MAN M 957 11 HET NAG M 961 14 HET NAG M 971 14 HET NAG M 981 14 HET NAG M 983 14 HET NAG M 991 14 HET ZN M1001 1 HET SO4 M1002 5 HET SO4 M1003 5 HET SO4 M1004 5 HET SO4 M1005 5 HET SO4 M1006 5 HET SO4 M1007 5 HET SO4 M1008 5 HET SO4 M1009 5 HET GOL M1010 6 HET GOL M1020 6 HET GOL M1021 6 HET GOL M1023 6 HET GOL M1024 6
HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM FUC ALPHA-L-FUCOSE HETNAM BMA BETA-D-MANNOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN
FORMUL 2 NAG 14(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 5 XYP 2(C5 H10 O5) FORMUL 6 MAN 2(C6 H12 O6) FORMUL 7 ZN ZN 2+ FORMUL 8 SO4 8(O4 S 2-) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 10 HOH *788(H2 O)
HELIX 1 1 ASN M 21 PHE M 25 5 5 HELIX 2 2 SER M 36 GLU M 41 1 6 HELIX 3 3 ASN M 49 TYR M 58 1 10 HELIX 4 4 TYR M 58 GLY M 63 1 6 HELIX 5 5 ASP M 74 TRP M 79 1 6 HELIX 6 6 TYR M 78 LEU M 89 1 12 HELIX 7 7 ALA M 99 ILE M 104 1 6 HELIX 8 8 LYS M 108 GLY M 112 5 5 HELIX 9 9 ASN M 114 LYS M 131 1 18 HELIX 10 10 PRO M 145 GLU M 153 1 9 HELIX 11 11 GLY M 154 PRO M 158 5 5 HELIX 12 12 GLN M 159 GLY M 176 1 18 HELIX 13 13 TYR M 189 GLY M 195 1 7 HELIX 14 14 THR M 221 TYR M 245 1 25 HELIX 15 15 THR M 246 GLY M 249 5 4 HELIX 16 16 ASP M 268 LEU M 283 1 16 HELIX 17 17 LEU M 283 GLY M 293 1 11 HELIX 18 18 PRO M 296 GLY M 304 1 9 HELIX 19 19 GLU M 305 LEU M 307 5 3 HELIX 20 20 SER M 311 LYS M 319 1 9 HELIX 21 21 THR M 348 ALA M 353 5 6 HELIX 22 22 ASP M 377 ASN M 381 5 5 HELIX 23 23 PRO M 386 TYR M 400 1 15 HELIX 24 24 ASN M 419 LEU M 425 1 7 HELIX 25 25 ASP M 426 ASP M 448 1 23 HELIX 26 26 LYS M 489 SER M 500 1 12
SHEET 1 A 9 LYS M 251 GLY M 253 0 SHEET 2 A 9 TYR M 181 ILE M 185 1 O TRP M 182 N GLY M 253 SHEET 3 A 9 THR M 134 PHE M 140 1 O PRO M 135 N TYR M 181 SHEET 4 A 9 GLY M 93 SER M 97 1 O TYR M 94 N PHE M 136 SHEET 5 A 9 ILE M 30 ALA M 34 1 O VAL M 33 N ARG M 95 SHEET 6 A 9 VAL M 451 TRP M 457 1 O LYS M 452 N ILE M 30 SHEET 7 A 9 ILE M 405 GLU M 409 1 O ILE M 405 N LYS M 452 SHEET 8 A 9 LEU M 325 TYR M 329 1 O LEU M 325 N TYR M 406 SHEET 9 A 9 THR M 255 THR M 258 1 O MET M 256 N ASN M 328 SHEET 1 B 3 TRP M 260 PRO M 263 0 SHEET 2 B 3 THR M 332 PRO M 337 1 N GLN M 333 O TRP M 260 SHEET 3 B 3 ALA M 355 THR M 358 -1 O LYS M 356 N GLN M 336 SHEET 1 C 2 SER M 476 ASP M 479 0 SHEET 2 C 2 ASN M 482 LEU M 488 -1 O ASN M 482 N ASP M 479
SSBOND 1 CYS M 206 CYS M 214 1555 1555 2.51
LINK ND2 ASN M 21 C1 NAG M 901 1555 1555 1.45 LINK NE2 HIS M 56 ZN ZN M1001 3656 1555 1.80 LINK ND2 ASN M 60 C1 NAG M 961 1555 1555 1.47 LINK OD2 ASP M 70 ZN ZN M1001 3656 1555 1.84 LINK ND2 ASN M 90 C1 NAG M 911 1555 1555 1.47 LINK ND2 ASN M 218 C1 NAG M 921 1555 1555 1.46 LINK ND2 ASN M 244 C1 NAG M 931 1555 1555 1.45 LINK ND2 ASN M 265 C1 NAG M 941 1555 1555 1.45 LINK ND2 ASN M 292 C1 NAG M 951 1555 1555 1.44 LINK ND2 ASN M 346 C1 NAG M 971 1555 1555 1.47 LINK ND2 ASN M 361 C1 NAG M 981 1555 1555 1.43 LINK ND2 ASN M 482 C1 NAG M 991 1555 1555 1.45 LINK O4 NAG M 921 C1 NAG M 923 1555 1555 1.38 LINK O4 NAG M 941 C1 NAG M 943 1555 1555 1.40 LINK O3 NAG M 941 C1 FUC M 942 1555 1555 1.40 LINK O4 NAG M 943 C1 BMA M 944 1555 1555 1.39 LINK O2 BMA M 944 C1B XYP M 945 1555 1555 1.40 LINK O4 NAG M 951 C1 NAG M 953 1555 1555 1.38 LINK O3 NAG M 951 C1 FUC M 952 1555 1555 1.40 LINK O4 NAG M 953 C1 BMA M 954 1555 1555 1.35 LINK O6 BMA M 954 C1 MAN M 957 1555 1555 1.41 LINK O3 BMA M 954 C1 MAN M 956 1555 1555 1.40 LINK O2 BMA M 954 C1B XYP M 955 1555 1555 1.38 LINK O4 NAG M 981 C1 NAG M 983 1555 1555 1.38 LINK ZN ZN M1001 OD2 ASP M 70 1555 3656 1.84 LINK ZN ZN M1001 OD1 ASP M 70 1555 3656 2.00 LINK ZN ZN M1001 OD2 ASP M 70 1555 1555 1.98 LINK ZN ZN M1001 NE2 HIS M 56 1555 3656 1.80 LINK ZN ZN M1001 NE2 HIS M 56 1555 1555 2.06
CISPEP 1 LEU M 10 PRO M 11 0 2.41 CISPEP 2 ALA M 202 PRO M 203 0 7.84 CISPEP 3 TRP M 457 ALA M 458 0 1.17
SITE 1 AC1 8 THR M 17 ASP M 18 ASN M 21 SER M 24 SITE 2 AC1 8 PRO M 501 HOH M2033 HOH M3009 HOH M3010 SITE 1 AC2 5 ASN M 90 SER M 500 HOH M3012 HOH M3013 SITE 2 AC2 5 HOH M3016 SITE 1 AC3 6 LYS M 165 ASP M 239 LEU M 240 ASN M 244 SITE 2 AC3 6 HOH M2304 HOH M3026 SITE 1 AC4 9 TYR M 58 ASN M 60 SER M 213 SO4 M1008 SITE 2 AC4 9 HOH M3056 HOH M3057 HOH M3058 HOH M3059 SITE 3 AC4 9 HOH M3063 SITE 1 AC5 2 ASN M 346 MET M 351 SITE 1 AC6 3 ASN M 482 ASP M 485 HOH M2664 SITE 1 AC7 3 HIS M 56 ASN M 68 ASP M 70 SITE 1 AC8 10 ARG M 106 GLU M 153 ARG M 205 ALA M 216 SITE 2 AC8 10 HOH M2182 HOH M2183 HOH M2204 HOH M3069 SITE 3 AC8 10 HOH M3070 HOH M3071 SITE 1 AC9 5 LYS M 108 ARG M 111 HOH M2199 HOH M3072 SITE 2 AC9 5 HOH M3073 SITE 1 BC1 6 ARG M 259 GLN M 333 SO4 M1009 HOH M3074 SITE 2 BC1 6 HOH M3075 HOH M3092 SITE 1 BC2 10 GLN M 7 GLU M 8 ASN M 9 HOH M2006 SITE 2 BC2 10 HOH M3076 HOH M3077 HOH M3078 HOH M3079 SITE 3 BC2 10 HOH M3080 HOH M3081 SITE 1 BC3 7 ARG M 269 HIS M 270 ALA M 273 ARG M 277 SITE 2 BC3 7 HOH M2396 HOH M3082 HOH M3083 SITE 1 BC4 5 ARG M 109 GLU M 173 HOH M3084 HOH M3085 SITE 2 BC4 5 HOH M3086 SITE 1 BC5 4 ASN M 60 HIS M 66 NAG M 961 HOH M2098 SITE 1 BC6 9 ARG M 194 ARG M 259 SO4 M1004 HOH M2325 SITE 2 BC6 9 HOH M2380 HOH M3090 HOH M3092 HOH M3093 SITE 3 BC6 9 HOH M3094 SITE 1 BC7 6 ASN M 316 LEU M 317 HOH M3095 HOH M3096 SITE 2 BC7 6 HOH M3097 HOH M3098 SITE 1 BC8 10 GLY M 47 PHE M 54 ARG M 57 GLN M 146 SITE 2 BC8 10 ASP M 150 PRO M 203 TYR M 215 HOH M2341 SITE 3 BC8 10 HOH M3099 HOH M3100 SITE 1 BC9 12 HIS M 247 GLN M 248 GLU M 280 GLN M 297 SITE 2 BC9 12 ILE M 298 FUC M 952 HOH M2408 HOH M3040 SITE 3 BC9 12 HOH M3101 HOH M3102 HOH M3103 HOH M3104 SITE 1 CC1 6 GLY M 132 THR M 134 NAG M 953 BMA M 954 SITE 2 CC1 6 HOH M3105 HOH M3106 SITE 1 CC2 9 GLN M 39 HIS M 141 ASN M 186 GLN M 187 SITE 2 CC2 9 GLU M 409 TRP M 457 GLU M 464 HOH M2291 SITE 3 CC2 9 HOH M2465 SITE 1 CC3 11 SER M 207 ASN M 218 THR M 221 GLU M 305 SITE 2 CC3 11 HOH M3018 HOH M3020 HOH M3021 HOH M3022 SITE 3 CC3 11 HOH M3023 HOH M3024 HOH M3025 SITE 1 CC4 15 ASN M 265 ASP M 268 LYS M 319 ALA M 362 SITE 2 CC4 15 HOH M2605 HOH M2607 HOH M3027 HOH M3028 SITE 3 CC4 15 HOH M3029 HOH M3030 HOH M3031 HOH M3032 SITE 4 CC4 15 HOH M3033 HOH M3034 HOH M3035 SITE 1 CC5 26 THR M 92 LYS M 180 ASN M 292 GLN M 297 SITE 2 CC5 26 GOL M1021 GOL M1023 HOH M2414 HOH M2417 SITE 3 CC5 26 HOH M3036 HOH M3037 HOH M3039 HOH M3040 SITE 4 CC5 26 HOH M3041 HOH M3042 HOH M3043 HOH M3044 SITE 5 CC5 26 HOH M3045 HOH M3046 HOH M3048 HOH M3050 SITE 6 CC5 26 HOH M3051 HOH M3053 HOH M3054 HOH M3055 SITE 7 CC5 26 HOH M3102 HOH M3106 SITE 1 CC6 14 PRO M 11 PHE M 12 THR M 13 ASN M 265 SITE 2 CC6 14 ASP M 266 ASN M 361 SER M 363 HIS M 365 SITE 3 CC6 14 HOH M2021 HOH M2382 HOH M2387 HOH M3064 SITE 4 CC6 14 HOH M3066 HOH M3067
CRYST1 134.300 136.400 80.300 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007446 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007331 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012453 0.00000