1DWF - Header Asymmetric Unit

HEADER HYDROLASE 05-DEC-99 1DWF

TITLE STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 2: STRUCTURE TITLE 2 AFTER IRRADIATION WITH 9.1*10E15 PHOTONS/MM2

CAVEAT 1DWF MAN M 1518 HAS WRONG CHIRALITY AT ATOM C5

COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYROSINASE MA1; COMPND 3 CHAIN: M; COMPND 4 FRAGMENT: RESIDUES 3-501; COMPND 5 SYNONYM: SINIGRINASE, THIOGLUCOSIDASE, THIOGLUCOSIDE GLUCOHYDROLASE; COMPND 6 EC: 3.2.1.147; COMPND 7 OTHER_DETAILS: AFTER IRRADIATION WITH 9.1*10E15 PHOTONS/MM2 OF COMPND 8 PHOTONS

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINAPIS ALBA; SOURCE 3 ORGANISM_COMMON: WHITE MUSTARD; SOURCE 4 ORGANISM_TAXID: 3728; SOURCE 5 STRAIN: EMERGO; SOURCE 6 ORGAN: SEED; SOURCE 7 CELL: MYROSIN CELLS; SOURCE 8 CELLULAR_LOCATION: MYROSIN GRAINS

KEYWDS HYDROLASE, GLYCOSIDASE, RADIATION DAMAGE, RADIOLYSIS, CRYO-COOLED

EXPDTA X-RAY DIFFRACTION

AUTHOR W.P.BURMEISTER

REVDAT 5 29-MAR-17 1DWF 1 TITLE SITE REVDAT 4 27-JUL-11 1DWF 1 TITLE CAVEAT COMPND KEYWDS REVDAT 4 2 1 JRNL REMARK DBREF SEQADV REVDAT 4 3 1 HETSYN FORMUL SITE MASTER REVDAT 4 4 1 VERSN REVDAT 3 24-FEB-09 1DWF 1 VERSN REVDAT 2 01-APR-03 1DWF 1 JRNL REVDAT 1 03-MAR-00 1DWF 0

JRNL AUTH W.P.BURMEISTER JRNL TITL STRUCTURAL CHANGES IN A CRYO-COOLED PROTEIN CRYSTAL DUE TO JRNL TITL 2 RADIATION DAMAGE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 328 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10713520 JRNL DOI 10.1107/S0907444999016261

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.P.BURMEISTER,S.COTTAZ,H.DRIGUEZ,R.IORI,S.PALMIERI, REMARK 1 AUTH 2 B.HENRISSAT REMARK 1 TITL THE CRYSTAL STRUCTURES OF SINAPIS ALBA MYROSINASE AND A REMARK 1 TITL 2 COVALENT GLYCOSYL-ENZYME INTERMEDIATE PROVIDE INSIGHTS INTO REMARK 1 TITL 3 THE SUBSTRATE RECOGNITION AND ACTIVE-SIDE MACHINERY OF AN REMARK 1 TITL 4 S-GLYCOSIDASE REMARK 1 REF STRUCTURE V. 5 663 1997 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 9195886 REMARK 1 DOI 10.1016/S0969-2126(97)00221-9

REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4632 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 251 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 349 REMARK 3 SOLVENT ATOMS : 788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.029 REMARK 3 BOND ANGLES (DEGREES) : 3.002 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.800 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.900 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.800 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.900 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AN OVERALL TEMPERATURE FACTOR REMARK 3 REFINEMENT AND AN OCCUPANCY REFINEMENT HAVE BEEN USED. THE AIM REMARK 3 OF THE STUDY IS TO LOOK AT THE EVOLUTION OF THE OCCUPANCY OF REMARK 3 GROUPS SENSITIVE TO RADIATION DAMAGE. THE MODEL IS NOT SUPPOSED REMARK 3 TO BE USED AS A MODEL OF MYROSINASE. A MODEL REPLACING ENTRY REMARK 3 1MYR WILL BE DEPOSITED LATER. NO COORDINATES ARE GIVEN FOR REMARK 3 RESIDUES 1 - 2. PRO 501 IS THE LAST RESIDUE SEEN IN ELECTRON REMARK 3 DENSITY. THE PROTEIN COULD EXTEND BEYOND PRO 501. THE OCCUPANCY REMARK 3 OF CERTAIN GROUPS WHICH ARE SENSITIVE TO RADIATION DAMAGE HAS REMARK 3 BEEN REFINED. DUE TO THIS REFINEMENT OCCUPANCIES DIFFERENT OR REMARK 3 EVEN BIGGER THAT 1.0 ARE PRESENT IN THE STRUCTURE.

REMARK 4 REMARK 4 1DWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-99. REMARK 100 THE PDBE ID CODE IS EBI-4440.

REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9475 REMARK 200 MONOCHROMATOR : C(111), GE(220) REMARK 200 OPTICS : BENT MULTILAYER MIRROR, REMARK 200 SAGITALLY FOCUSING CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : 0.14700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: PDB ENTRY 1MYR REMARK 200 REMARK 200 REMARK: DOSE 0.1*10E15 PHOTONS/MM2 USED FOR DATA COLLECTION, REMARK 200 I/SIGMA VALUES ARE STRONGLY AFFECTED BY A FEW ZINGERS ON THE REMARK 200 DETECTOR

REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD, 12 MG/ML PROTEIN REMARK 280 IN 30 MM HEPES, PH 6.5, 0.05 % NAN3 PRECIPITANT 66% SATURATED REMARK 280 AMMONIUM SULFATE, 100MM TRIS-HCL

REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.15000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.20000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.15000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 67.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.20000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL

REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.

REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -224.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 134.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.45000

REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS ENTRY IS THE 2ND STRUCTURE OF A SERIES OF STRUCTURES REMARK 400 IN A STUDY ON RADIATION DAMAGE IN CRYO-COOLED CRYSTALS. IT REMARK 400 HAS BEEN COLLECTED AFTER IRRADIATION OF THE CRYSTAL WITH A REMARK 400 DOSE OF 9.1*10E15 PHOTONS/MM2. THERE ARE OTHER RELATED REMARK 400 ENTRIES CORRESPONDING TO THE STRUCTURE AFTER DIFFERENT REMARK 400 RADIATION DOSES. THE STRUCTURE PRIOR TO IRRADIATION IS REMARK 400 GIVEN IN ENTRY 1DWA

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH M 2082 O HOH M 2083 0.87 REMARK 500 O PHE M 12 O HOH M 2025 1.06 REMARK 500 C6 MAN M 1518 O HOH M 1055 1.14 REMARK 500 OD2 ASP M 431 O HOH M 2624 1.32 REMARK 500 NZ LYS M 375 O HOH M 2546 1.47 REMARK 500 O HOH M 2053 O HOH M 2058 1.56 REMARK 500 CE LYS M 375 O HOH M 2546 1.60 REMARK 500 CD2 HIS M 365 O HOH M 2525 1.63 REMARK 500 OD1 ASP M 431 O HOH M 2620 1.66 REMARK 500 O TYR M 215 O HOH M 2355 1.69 REMARK 500 O HOH M 2547 O HOH M 2548 1.70 REMARK 500 C1 GOL M 1533 O HOH M 3026 1.71 REMARK 500 O HOH M 2059 O HOH M 2061 1.79 REMARK 500 O6 MAN M 1518 O HOH M 1055 1.81 REMARK 500 O HOH M 2620 O HOH M 2623 1.83 REMARK 500 OD2 ASP M 150 O HOH M 2277 1.88 REMARK 500 O GLY M 53 O HOH M 2097 1.90 REMARK 500 O HOH M 2545 O HOH M 2546 1.90 REMARK 500 C2 GOL M 1533 O HOH M 3026 1.91 REMARK 500 CA GLY M 15 O HOH M 2032 1.93 REMARK 500 CE1 TYR M 477 O HOH M 2659 1.94 REMARK 500 CE2 TYR M 427 O HOH M 2614 1.95 REMARK 500 O HOH M 2617 O HOH M 2618 1.95 REMARK 500 O HOH M 1062 O HOH M 1063 1.96 REMARK 500 OE1 GLU M 151 O HOH M 2279 1.97 REMARK 500 O1 SO4 M 1532 O HOH M 3024 2.00 REMARK 500 O2 GOL M 1533 O HOH M 3026 2.01 REMARK 500 O HOH M 1009 O HOH M 2017 2.02 REMARK 500 C5 MAN M 1518 O HOH M 1055 2.03 REMARK 500 O3 FUC M 1513 O HOH M 1040 2.06 REMARK 500 O HOH M 2211 O HOH M 2213 2.06 REMARK 500 O6 BMA M 1515 C5 MAN M 1518 2.09 REMARK 500 O HOH M 2259 O HOH M 2327 2.09 REMARK 500 O3 NAG M 1504 O HOH M 1019 2.10 REMARK 500 O HOH M 2200 O HOH M 2366 2.10 REMARK 500 O HOH M 2034 O HOH M 2623 2.11 REMARK 500 OD2 ASP M 70 O HOH M 2125 2.11 REMARK 500 CZ ARG M 472 O HOH M 2659 2.12 REMARK 500 NE2 HIS M 365 O HOH M 2525 2.14 REMARK 500 O HOH M 2305 O HOH M 2312 2.14 REMARK 500 O2 SO4 M 1526 O HOH M 3006 2.14 REMARK 500 O ARG M 111 O HOH M 2213 2.14 REMARK 500 ND2 ASN M 381 O HOH M 2554 2.14 REMARK 500 O2 BMA M 1515 O5B XYP M 1516 2.15 REMARK 500 O2 SO4 M 1527 O3 SO4 M 1532 2.15 REMARK 500 O4 NAG M 1514 C2 BMA M 1515 2.15 REMARK 500 OG SER M 220 O HOH M 2359 2.15 REMARK 500 CG2 THR M 428 O HOH M 2617 2.15 REMARK 500 O HOH M 2280 O HOH M 2284 2.15 REMARK 500 O4 SO4 M 1526 O HOH M 3006 2.16 REMARK 500 REMARK 500 THIS ENTRY HAS 57 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN M 1524 ZN ZN M 1524 3656 1.10 REMARK 500 O HOH M 2279 O HOH M 2279 3656 1.10 REMARK 500 O HOH M 2009 O HOH M 2520 4576 1.36 REMARK 500 O HOH M 2248 O HOH M 2534 4576 1.37 REMARK 500 O HOH M 2247 O HOH M 2247 4576 1.42 REMARK 500 O HOH M 2555 O HOH M 2555 4576 1.44 REMARK 500 O HOH M 2018 O HOH M 2018 4576 1.63 REMARK 500 O HOH M 2258 O HOH M 2258 4576 1.63 REMARK 500 O HOH M 2385 O HOH M 2426 6565 1.71 REMARK 500 O HOH M 2116 O HOH M 2132 3656 1.76 REMARK 500 O HOH M 2245 O HOH M 2621 4576 1.90 REMARK 500 N GLY M 45 O ARG M 57 3656 1.95 REMARK 500 O HOH M 2523 O HOH M 2622 4576 2.01 REMARK 500 O LYS M 375 CD LYS M 375 4576 2.04 REMARK 500 O HOH M 2388 O HOH M 2441 6565 2.06 REMARK 500 CG2 THR M 379 O HOH M 2603 4576 2.07 REMARK 500 O HOH M 2018 O HOH M 2019 4576 2.08 REMARK 500 OG1 THR M 43 O HIS M 56 3656 2.10 REMARK 500 O HOH M 2047 O HOH M 2127 3656 2.10 REMARK 500 O HOH M 1057 O HOH M 2085 3656 2.12 REMARK 500 O HOH M 3014 O HOH M 3014 4576 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS M 6 CB CYS M 6 SG -0.150 REMARK 500 THR M 13 C THR M 13 O -0.185 REMARK 500 ASN M 16 CG ASN M 16 ND2 0.317 REMARK 500 SER M 24 CB SER M 24 OG 0.091 REMARK 500 GLU M 115 CD GLU M 115 OE2 0.075 REMARK 500 SER M 178 CB SER M 178 OG 0.116 REMARK 500 TYR M 264 CE1 TYR M 264 CZ -0.283 REMARK 500 TYR M 264 CZ TYR M 264 OH 0.343 REMARK 500 LYS M 356 CE LYS M 356 NZ -0.277 REMARK 500 SER M 423 CB SER M 423 OG 0.128 REMARK 500 PRO M 501 CA PRO M 501 C 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP M 74 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 PHE M 76 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG M 109 NH1 - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG M 109 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 GLU M 115 OE1 - CD - OE2 ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP M 169 OD1 - CG - OD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP M 169 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP M 169 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP M 169 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG M 194 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG M 242 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 THR M 246 OG1 - CB - CG2 ANGL. DEV. = -14.7 DEGREES REMARK 500 TYR M 264 CD1 - CE1 - CZ ANGL. DEV. = -6.2 DEGREES REMARK 500 TYR M 264 OH - CZ - CE2 ANGL. DEV. = -20.3 DEGREES REMARK 500 TYR M 264 CE1 - CZ - CE2 ANGL. DEV. = 18.6 DEGREES REMARK 500 TYR M 264 CZ - CE2 - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ASP M 266 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP M 268 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG M 269 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG M 269 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLU M 372 OE1 - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 GLU M 372 CG - CD - OE2 ANGL. DEV. = 13.1 DEGREES REMARK 500 TYR M 427 CG - CD1 - CE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 CYS M 434 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP M 448 OD1 - CG - OD2 ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP M 448 CB - CG - OD2 ANGL. DEV. = -16.8 DEGREES REMARK 500 ASN M 482 CA - CB - CG ANGL. DEV. = -13.3 DEGREES REMARK 500 ASN M 482 CB - CG - OD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR M 72 -139.27 46.75 REMARK 500 HIS M 141 52.19 -107.43 REMARK 500 TRP M 142 -14.10 84.57 REMARK 500 TYR M 152 15.91 -146.04 REMARK 500 THR M 184 -76.02 -81.69 REMARK 500 GLN M 187 82.47 39.11 REMARK 500 ASN M 218 103.90 -160.79 REMARK 500 ASP M 426 57.02 -93.18 REMARK 500 ASN M 466 -15.02 74.06 REMARK 500 ASN M 482 89.03 -162.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR M 13 -12.84 REMARK 500 REMARK 500 REMARK: NULL

REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 GLYCOSYLATION SITES: REMARK 600 ASN 21 -- NAG 901 REMARK 600 ASN 60 -- NAG 961 REMARK 600 ASN 90 -- NAG 911 REMARK 600 ASN 218 -- NAG 921 <-- (1,4)-NAG 923 REMARK 600 ASN 244 -- NAG 931 REMARK 600 ASN 265 -- NAG 941 <-- (1,3)-FUC 942 REMARK 600 | REMARK 600 (1,4)-NAG 943 <-- (1,4)-MAN 944 <-- (1,2)-XYS 945 REMARK 600 REMARK 600 ASN 292 -- NAG 951 <-- (1,3)-FUC 952 REMARK 600 | (1,6)-MAN 957 REMARK 600 | / REMARK 600 (1,4)-NAG 953 <-- (1,4)-MAN 954 <-- (1,2)-XYS 955 REMARK 600 \ REMARK 600 (1,3)-MAN 956 REMARK 600 REMARK 600 ASN 346 -- NAG 971 REMARK 600 ASN 361 -- NAG 981 <-- (1,4)-NAG 983 REMARK 600 ASN 482 -- NAG 991

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN M1524 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS M 56 NE2 REMARK 620 2 ASP M 70 OD2 89.0 REMARK 620 3 ASP M 70 OD2 169.8 80.9 REMARK 620 4 ASP M 70 OD1 121.3 147.8 68.5 REMARK 620 5 HIS M 56 NE2 97.0 117.5 88.3 72.7 REMARK 620 N 1 2 3 4

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN M 1524 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1528 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 M 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M 1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M 1536 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL M 1537 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1502 bound REMARK 800 to ASN M 21 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1519 bound REMARK 800 to ASN M 60 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1503 bound REMARK 800 to ASN M 90 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Poly-Saccharide residues NAG REMARK 800 M1504 through NAG M1505 bound to ASN M 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1506 bound REMARK 800 to ASN M 244 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Poly-Saccharide residues NAG REMARK 800 M1507 through XYP M1511 bound to ASN M 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Poly-Saccharide residues NAG REMARK 800 M1512 through MAN M1518 bound to ASN M 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1520 bound REMARK 800 to ASN M 346 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Poly-Saccharide residues NAG REMARK 800 M1521 through NAG M1522 bound to ASN M 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for Mono-Saccharide NAG M1523 bound REMARK 800 to ASN M 482 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues SO4 M1527 and SO4 REMARK 800 M1532

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MYR RELATED DB: PDB REMARK 900 MYROSINASE FROM SINAPIS ALBA REMARK 900 RELATED ID: 1DWA RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 1: REMARK 900 STRUCTURE PRIOR TO IRRADIATION REMARK 900 RELATED ID: 1DWG RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL: PART 3: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 18.2*10E15 PHOTONS/MM2. REMARK 900 RELATED ID: 1DWH RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 4: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 27.2*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWI RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 5: REMARK 900 STRUCTURE AFTER IRRADIATION WITH 54.0*10E15 PHOTONS/MM2 REMARK 900 RELATED ID: 1DWJ RELATED DB: PDB REMARK 900 STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. REFINED PART 6: REMARK 900 STRUCTURE AFTER A RADIATION DOSE OF 54*10E15 PHOTONS/MM2

REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE SOME DISCREPANCIES IN THE SEQUENCE COMPARED TO REMARK 999 ENTRY 1MYR AS THE X-RAY SEQUENCE HAS BEEN CORRECTED WHEN REMARK 999 HIGHER RESOLUTION DATA (1.2 A) BECAME AVAILABLE. REMARK 999 REMARK 999 THE SEQUENCE OF 1MYR (DETERMINED FROM THE X-RAY STRUCTURE) IS REMARK 999 ESSENTIALLY IDENTICAL TO A PARTIAL SEQUENCE OF A MYROSINASE REMARK 999 FROM SINAPIS ALBA (SWISS-PROT P29736). THE NUCLEOTIDE SEQUENCE REMARK 999 OF THE GENE ENCODING THE CRYSTALLIZED ENZYME WAS NOT DETERMINED. REMARK 999 SIGNIFICANT DIFFERENCES BEYOND THE UNCERTAINTY OF A SEQUENCE REMARK 999 DETERMINED FROM A CRYSTAL STRUCTURE SHOW THAT THE ISOENZYME REMARK 999 WHICH IS PRESENT IN THE DEPOSITORS' CRYSTALS IS DIFFERENT FROM REMARK 999 THAT WHOSE PARTIAL SEQUENCE IS KNOWN. THE DEPOSITORS' SEQUENCE REMARK 999 IS ABOUT 70% IDENTICAL TO THE ONLY KNOWN FULL-LENGTH SEQUENCE REMARK 999 OF ANOTHER MYROSINASE ISOZYME FROM SINAPIS ALBA (SWISS-PROT REMARK 999 P29092). ALL KNOWN MYROSINASE SEQUENCES (FROM SINAPSIS ALBA REMARK 999 OR FROM OTHER CRUCIFERAE) ARE LONGER THAN 1MYR AT THEIR REMARK 999 C-TERMINUS BY APPROXIMATELY 25 RESIDUES. IT IS THEREFORE REMARK 999 POSSIBLE THAT THE SEQUENCE OF 1MYR IS ACTUALLY LONGER THAN THAT REMARK 999 SEEN IN THE X-RAY STRUCTURE.

DBREF 1DWF M 3 501 UNP P29736 MYRA_SINAL 3 501

SEQADV 1DWF THR M 497 UNP P29736 SER 497 SEE REMARK 999

SEQRES 1 M 499 GLU ILE THR CYS GLN GLU ASN LEU PRO PHE THR CYS GLY SEQRES 2 M 499 ASN THR ASP ALA LEU ASN SER SER SER PHE SER SER ASP SEQRES 3 M 499 PHE ILE PHE GLY VAL ALA SER SER ALA TYR GLN ILE GLU SEQRES 4 M 499 GLY THR ILE GLY ARG GLY LEU ASN ILE TRP ASP GLY PHE SEQRES 5 M 499 THR HIS ARG TYR PRO ASN LYS SER GLY PRO ASP HIS GLY SEQRES 6 M 499 ASN GLY ASP THR THR CYS ASP SER PHE SER TYR TRP GLN SEQRES 7 M 499 LYS ASP ILE ASP VAL LEU ASP GLU LEU ASN ALA THR GLY SEQRES 8 M 499 TYR ARG PHE SER ILE ALA TRP SER ARG ILE ILE PRO ARG SEQRES 9 M 499 GLY LYS ARG SER ARG GLY VAL ASN GLU LYS GLY ILE ASP SEQRES 10 M 499 TYR TYR HIS GLY LEU ILE SER GLY LEU ILE LYS LYS GLY SEQRES 11 M 499 ILE THR PRO PHE VAL THR LEU PHE HIS TRP ASP LEU PRO SEQRES 12 M 499 GLN THR LEU GLN ASP GLU TYR GLU GLY PHE LEU ASP PRO SEQRES 13 M 499 GLN ILE ILE ASP ASP PHE LYS ASP TYR ALA ASP LEU CYS SEQRES 14 M 499 PHE GLU GLU PHE GLY ASP SER VAL LYS TYR TRP LEU THR SEQRES 15 M 499 ILE ASN GLN LEU TYR SER VAL PRO THR ARG GLY TYR GLY SEQRES 16 M 499 SER ALA LEU ASP ALA PRO GLY ARG CYS SER PRO THR VAL SEQRES 17 M 499 ASP PRO SER CYS TYR ALA GLY ASN SER SER THR GLU PRO SEQRES 18 M 499 TYR ILE VAL ALA HIS HIS GLN LEU LEU ALA HIS ALA LYS SEQRES 19 M 499 VAL VAL ASP LEU TYR ARG LYS ASN TYR THR HIS GLN GLY SEQRES 20 M 499 GLY LYS ILE GLY PRO THR MET ILE THR ARG TRP PHE LEU SEQRES 21 M 499 PRO TYR ASN ASP THR ASP ARG HIS SER ILE ALA ALA THR SEQRES 22 M 499 GLU ARG MET LYS GLU PHE PHE LEU GLY TRP PHE MET GLY SEQRES 23 M 499 PRO LEU THR ASN GLY THR TYR PRO GLN ILE MET ILE ASP SEQRES 24 M 499 THR VAL GLY GLU ARG LEU PRO SER PHE SER PRO GLU GLU SEQRES 25 M 499 SER ASN LEU VAL LYS GLY SER TYR ASP PHE LEU GLY LEU SEQRES 26 M 499 ASN TYR TYR PHE THR GLN TYR ALA GLN PRO SER PRO ASN SEQRES 27 M 499 PRO VAL ASN SER THR ASN HIS THR ALA MET MET ASP ALA SEQRES 28 M 499 GLY ALA LYS LEU THR TYR ILE ASN ALA SER GLY HIS TYR SEQRES 29 M 499 ILE GLY PRO LEU PHE GLU LYS ASP LYS ALA ASP SER THR SEQRES 30 M 499 ASP ASN ILE TYR TYR TYR PRO LYS GLY ILE TYR SER VAL SEQRES 31 M 499 MET ASP TYR PHE LYS ASN LYS TYR TYR ASN PRO LEU ILE SEQRES 32 M 499 TYR VAL THR GLU ASN GLY ILE SER THR PRO GLY ASP GLU SEQRES 33 M 499 ASN ARG ASN GLN SER MET LEU ASP TYR THR ARG ILE ASP SEQRES 34 M 499 TYR LEU CYS SER HIS LEU CYS PHE LEU ASN LYS VAL ILE SEQRES 35 M 499 LYS GLU LYS ASP VAL ASN VAL LYS GLY TYR LEU ALA TRP SEQRES 36 M 499 ALA LEU GLY ASP ASN TYR GLU PHE ASN LYS GLY PHE THR SEQRES 37 M 499 VAL ARG PHE GLY LEU SER TYR ILE ASP TRP ASN ASN VAL SEQRES 38 M 499 THR ASP ARG ASP LEU LYS LYS SER GLY GLN TRP TYR GLN SEQRES 39 M 499 THR PHE ILE SER PRO

MODRES 1DWF ASN M 21 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 60 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 90 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 218 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 244 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 265 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 292 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 346 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 361 ASN GLYCOSYLATION SITE MODRES 1DWF ASN M 482 ASN GLYCOSYLATION SITE

HET NAG M1502 14 HET NAG M1503 14 HET NAG M1504 14 HET NAG M1505 14 HET NAG M1506 14 HET NAG M1507 14 HET FUC M1508 10 HET NAG M1509 14 HET BMA M1510 11 HET XYP M1511 9 HET NAG M1512 14 HET FUC M1513 10 HET NAG M1514 14 HET BMA M1515 11 HET XYP M1516 9 HET MAN M1517 11 HET MAN M1518 11 HET NAG M1519 14 HET NAG M1520 14 HET NAG M1521 14 HET NAG M1522 14 HET NAG M1523 14 HET ZN M1524 1 HET SO4 M1525 5 HET SO4 M1526 5 HET SO4 M1527 5 HET SO4 M1528 5 HET SO4 M1529 5 HET SO4 M1530 5 HET SO4 M1531 5 HET SO4 M1532 5 HET GOL M1533 6 HET GOL M1534 6 HET GOL M1535 6 HET GOL M1536 6 HET GOL M1537 6

HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM FUC ALPHA-L-FUCOSE HETNAM BMA BETA-D-MANNOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL

HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL

FORMUL 2 NAG 14(C8 H15 N O6) FORMUL 6 FUC 2(C6 H12 O5) FORMUL 6 BMA 2(C6 H12 O6) FORMUL 6 XYP 2(C5 H10 O5) FORMUL 7 MAN 2(C6 H12 O6) FORMUL 12 ZN ZN 2+ FORMUL 13 SO4 8(O4 S 2-) FORMUL 21 GOL 5(C3 H8 O3) FORMUL 26 HOH *788(H2 O)

HELIX 1 1 ASN M 21 PHE M 25 5 5 HELIX 2 2 SER M 36 GLU M 41 1 6 HELIX 3 3 ASN M 49 TYR M 58 1 10 HELIX 4 4 TYR M 58 GLY M 63 1 6 HELIX 5 5 ASP M 74 TRP M 79 1 6 HELIX 6 6 TYR M 78 ASN M 90 1 13 HELIX 7 7 ALA M 99 ILE M 104 1 6 HELIX 8 8 LYS M 108 GLY M 112 5 5 HELIX 9 9 ASN M 114 LYS M 131 1 18 HELIX 10 10 PRO M 145 GLU M 153 1 9 HELIX 11 11 GLY M 154 PRO M 158 5 5 HELIX 12 12 GLN M 159 GLY M 176 1 18 HELIX 13 13 TYR M 189 GLY M 197 1 9 HELIX 14 14 THR M 221 TYR M 245 1 25 HELIX 15 15 THR M 246 GLY M 249 5 4 HELIX 16 16 ASP M 268 LEU M 283 1 16 HELIX 17 17 LEU M 283 GLY M 293 1 11 HELIX 18 18 PRO M 296 GLY M 304 1 9 HELIX 19 19 GLU M 305 LEU M 307 5 3 HELIX 20 20 SER M 311 LYS M 319 1 9 HELIX 21 21 THR M 348 ALA M 353 5 6 HELIX 22 22 ASP M 377 ASN M 381 5 5 HELIX 23 23 PRO M 386 TYR M 400 1 15 HELIX 24 24 ASN M 419 LEU M 425 1 7 HELIX 25 25 ASP M 426 ASP M 448 1 23 HELIX 26 26 LYS M 489 SER M 500 1 12

SHEET 1 A 9 LYS M 251 GLY M 253 0 SHEET 2 A 9 TYR M 181 ILE M 185 1 O TRP M 182 N GLY M 253 SHEET 3 A 9 THR M 134 PHE M 140 1 O PRO M 135 N TYR M 181 SHEET 4 A 9 GLY M 93 SER M 97 1 O TYR M 94 N PHE M 136 SHEET 5 A 9 ILE M 30 ALA M 34 1 O VAL M 33 N ARG M 95 SHEET 6 A 9 VAL M 451 TRP M 457 1 O LYS M 452 N ILE M 30 SHEET 7 A 9 ILE M 405 GLU M 409 1 O ILE M 405 N LYS M 452 SHEET 8 A 9 LEU M 325 TYR M 329 1 O LEU M 325 N TYR M 406 SHEET 9 A 9 THR M 255 THR M 258 1 O MET M 256 N ASN M 328 SHEET 1 B 3 TRP M 260 PRO M 263 0 SHEET 2 B 3 THR M 332 PRO M 337 1 N GLN M 333 O TRP M 260 SHEET 3 B 3 ALA M 355 THR M 358 -1 O LYS M 356 N GLN M 336 SHEET 1 C 2 SER M 476 ASP M 479 0 SHEET 2 C 2 ASN M 482 LEU M 488 -1 O ASN M 482 N ASP M 479

SSBOND 1 CYS M 6 CYS M 438 1555 1555 2.54 SSBOND 2 CYS M 14 CYS M 434 1555 1555 2.24 SSBOND 3 CYS M 206 CYS M 214 1555 1555 2.02

LINK ND2 ASN M 21 C1 NAG M1502 1555 1555 1.75 LINK ND2 ASN M 60 C1 NAG M1519 1555 1555 1.47 LINK ND2 ASN M 90 C1 NAG M1503 1555 1555 1.72 LINK ND2 ASN M 218 C1 NAG M1504 1555 1555 1.65 LINK ND2 ASN M 244 C1 NAG M1506 1555 1555 1.77 LINK ND2 ASN M 265 C1 NAG M1507 1555 1555 1.65 LINK ND2 ASN M 292 C1 NAG M1512 1555 1555 1.65 LINK ND2 ASN M 346 C1 NAG M1520 1555 1555 1.51 LINK ND2 ASN M 361 C1 NAG M1521 1555 1555 1.47 LINK ND2 ASN M 482 C1 NAG M1523 1555 1555 1.49 LINK O4 NAG M1504 C1 NAG M1505 1555 1555 1.30 LINK O3 NAG M1507 C1 FUC M1508 1555 1555 1.43 LINK O4 NAG M1507 C1 NAG M1509 1555 1555 1.39 LINK O4 NAG M1509 C1 BMA M1510 1555 1555 1.40 LINK O2 BMA M1510 C1B XYP M1511 1555 1555 1.38 LINK O4 NAG M1512 C1 NAG M1514 1555 1555 1.38 LINK O3 NAG M1512 C1 FUC M1513 1555 1555 1.41 LINK O4 NAG M1514 C1 BMA M1515 1555 1555 1.36 LINK O2 BMA M1515 C1B XYP M1516 1555 1555 1.46 LINK O3 BMA M1515 C1 MAN M1517 1555 1555 1.42 LINK O6 BMA M1515 C1 MAN M1518 1555 1555 1.43 LINK O4 NAG M1521 C1 NAG M1522 1555 1555 1.38 LINK ZN ZN M1524 NE2 HIS M 56 1555 3656 1.72 LINK ZN ZN M1524 OD2 ASP M 70 1555 1555 1.99 LINK ZN ZN M1524 OD2 ASP M 70 1555 3656 1.71 LINK ZN ZN M1524 OD1 ASP M 70 1555 3656 2.15 LINK ZN ZN M1524 NE2 HIS M 56 1555 1555 2.01 LINK O2 SO4 M1527 O2 SO4 M1532 1555 1555 1.91

CISPEP 1 LEU M 10 PRO M 11 0 -2.61 CISPEP 2 ALA M 202 PRO M 203 0 3.20 CISPEP 3 TRP M 457 ALA M 458 0 -2.64

SITE 1 AC1 3 HIS M 56 ASN M 68 ASP M 70 SITE 1 AC2 8 ARG M 106 ARG M 205 HOH M2192 HOH M2213 SITE 2 AC2 8 HOH M2356 HOH M3002 HOH M3003 HOH M3004 SITE 1 AC3 7 LYS M 108 ARG M 111 GLU M 151 HOH M2209 SITE 2 AC3 7 HOH M2292 HOH M3005 HOH M3006 SITE 1 AC4 10 GLN M 7 GLU M 8 ASN M 9 HOH M2004 SITE 2 AC4 10 HOH M3010 HOH M3011 HOH M3012 HOH M3013 SITE 3 AC4 10 HOH M3014 HOH M3015 SITE 1 AC5 6 HIS M 270 ALA M 273 ARG M 277 HOH M2413 SITE 2 AC5 6 HOH M3016 HOH M3017 SITE 1 AC6 6 ARG M 109 VAL M 113 GLU M 173 HOH M2202 SITE 2 AC6 6 HOH M3018 HOH M3019 SITE 1 AC7 4 ASN M 60 HIS M 66 NAG M1519 HOH M3020 SITE 1 AC8 8 ASN M 316 LEU M 317 HOH M1032 HOH M2472 SITE 2 AC8 8 HOH M3026 HOH M3027 HOH M3028 HOH M3029 SITE 1 AC9 9 PHE M 54 ARG M 57 GLN M 146 GLN M 149 SITE 2 AC9 9 PRO M 203 TYR M 215 HOH M2354 HOH M3030 SITE 3 AC9 9 HOH M3031 SITE 1 BC1 12 HIS M 247 GLY M 249 GLU M 280 GLN M 297 SITE 2 BC1 12 ILE M 298 HOH M1040 FUC M1513 HOH M2385 SITE 3 BC1 12 HOH M2426 HOH M3032 HOH M3033 HOH M3034 SITE 1 BC2 5 GLY M 132 THR M 134 NAG M1514 BMA M1515 SITE 2 BC2 5 HOH M3035 SITE 1 BC3 9 GLN M 39 HIS M 141 ASN M 186 GLN M 187 SITE 2 BC3 9 GLU M 409 TRP M 457 GLU M 464 PHE M 465 SITE 3 BC3 9 HOH M2482 SITE 1 BC4 9 THR M 17 ASP M 18 ALA M 19 ASN M 21 SITE 2 BC4 9 SER M 24 PRO M 501 HOH M1010 HOH M1011 SITE 3 BC4 9 HOH M1012 SITE 1 BC5 8 TYR M 58 ASN M 60 HOH M1056 HOH M1057 SITE 2 BC5 8 HOH M1059 SO4 M1531 HOH M2085 HOH M2106 SITE 1 BC6 5 ASN M 90 SER M 500 HOH M1013 HOH M1016 SITE 2 BC6 5 HOH M2686 SITE 1 BC7 9 SER M 207 ASN M 218 THR M 221 GLU M 305 SITE 2 BC7 9 HOH M1017 HOH M1019 HOH M1020 HOH M1021 SITE 3 BC7 9 HOH M1022 SITE 1 BC8 5 LYS M 165 LEU M 240 ASN M 244 HOH M1025 SITE 2 BC8 5 HOH M2371 SITE 1 BC9 15 ASN M 265 ASP M 268 ALA M 362 HOH M1026 SITE 2 BC9 15 HOH M1027 HOH M1028 HOH M1029 HOH M1030 SITE 3 BC9 15 HOH M1031 HOH M1032 HOH M1033 HOH M1034 SITE 4 BC9 15 HOH M2410 HOH M2613 HOH M2615 SITE 1 CC1 27 THR M 92 LYS M 180 ASN M 292 THR M 294 SITE 2 CC1 27 GLN M 297 ILE M 300 HOH M1035 HOH M1036 SITE 3 CC1 27 HOH M1037 HOH M1038 HOH M1040 HOH M1041 SITE 4 CC1 27 HOH M1044 HOH M1045 HOH M1047 HOH M1048 SITE 5 CC1 27 HOH M1050 HOH M1051 HOH M1052 HOH M1053 SITE 6 CC1 27 HOH M1055 GOL M1535 GOL M1536 HOH M2322 SITE 7 CC1 27 HOH M2432 HOH M3033 HOH M3036 SITE 1 CC2 2 ASN M 346 HOH M2504 SITE 1 CC3 17 PRO M 11 PHE M 12 THR M 13 ASN M 265 SITE 2 CC3 17 ASP M 266 ASN M 361 SER M 363 HIS M 365 SITE 3 CC3 17 HOH M1060 HOH M1061 HOH M1062 HOH M1063 SITE 4 CC3 17 HOH M2025 HOH M2400 HOH M2404 HOH M2406 SITE 5 CC3 17 HOH M2485 SITE 1 CC4 3 ASN M 482 ASP M 485 HOH M2666 SITE 1 CC5 10 ARG M 194 ARG M 259 GLN M 333 HOH M2332 SITE 2 CC5 10 HOH M3007 HOH M3009 HOH M3021 HOH M3022 SITE 3 CC5 10 HOH M3023 HOH M3024

CRYST1 134.300 136.400 80.300 90.00 90.00 90.00 C 2 2 21 8

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.007446 0.000000 0.000000 0.00000

SCALE2 0.000000 0.007331 0.000000 0.00000

SCALE3 0.000000 0.000000 0.012453 0.00000