10 20 30 40 50 60 70 80 1DVV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 22-JAN-00 1DVV
TITLE SOLUTION STRUCTURE OF THE QUINTUPLE MUTANT OF CYTOCHROME C- TITLE 2 551 FROM PSEUDOMONAS AERUGINOSA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C551; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PKK223-3
KEYWDS CYTOCHROME C, STABILITY, ELECTRON TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.HASEGAWA,S.UCHIYAMA,Y.TANIMOTO,M.MIZUTANI,Y.KOBAYASHI, AUTHOR 2 Y.SAMBONGI,Y.IGARASHI
REVDAT 2 24-FEB-09 1DVV 1 VERSN REVDAT 1 29-NOV-00 1DVV 0
JRNL AUTH J.HASEGAWA,S.UCHIYAMA,Y.TANIMOTO,M.MIZUTANI, JRNL AUTH 2 Y.KOBAYASHI,Y.SAMBONGI,Y.IGARASHI JRNL TITL SELECTED MUTATIONS IN A MESOPHILIC CYTOCHROME C JRNL TITL 2 CONFER THE STABILITY OF A THERMOPHILIC COUNTERPART. JRNL REF J.BIOL.CHEM. V. 275 37824 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10918067 JRNL DOI 10.1074/JBC.M005861200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DVV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-00. REMARK 100 THE RCSB ID CODE IS RCSB010419.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 1MM CYTOCHROME C551(F7A/V13M/ REMARK 210 F34Y/E43Y/V78I) REDUCED WITH REMARK 210 DITHIONITE; 1MM CYTOCHROME REMARK 210 C551(F7A/V13M/F34Y/E43Y/V78I) REMARK 210 REDUCED WITH DITHIONITE; 1MM REMARK 210 CYTOCHROME C551(F7A/V13M/F34Y/ REMARK 210 E43Y/V78I) U-15N REDUCED WITH REMARK 210 DITHIONITE; 1MM CYTOCHROME REMARK 210 C551(F7A/V13M/F34Y/E43Y/V78I) REMARK 210 U-15N,13C REDUCED WITH REMARK 210 DITHIONITE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, DQF-COSY, 3D_15N- REMARK 210 SEPARATED_NOESY, HNHA, HNHB, 3D_13C,15N_SIMULTANOUSLY_ REMARK 210 SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 159.97 -48.68 REMARK 500 1 ILE A 18 -27.75 -37.79 REMARK 500 1 ASP A 19 -32.78 -155.24 REMARK 500 1 MET A 22 -117.79 -123.02 REMARK 500 1 ALA A 26 156.17 -42.28 REMARK 500 1 SER A 52 167.98 163.87 REMARK 500 1 GLN A 53 -161.14 -101.90 REMARK 500 1 VAL A 55 -62.92 -104.54 REMARK 500 1 PRO A 58 6.83 -68.94 REMARK 500 1 ALA A 65 35.72 -89.26 REMARK 500 1 SER A 67 172.82 -46.39 REMARK 500 1 GLN A 81 179.04 -50.51 REMARK 500 2 ILE A 18 -27.31 -38.66 REMARK 500 2 ASP A 19 -35.90 -148.65 REMARK 500 2 THR A 20 -179.29 -69.05 REMARK 500 2 MET A 22 -100.89 -78.82 REMARK 500 2 ALA A 26 151.24 -46.11 REMARK 500 2 ALA A 35 90.13 -51.27 REMARK 500 2 ALA A 38 39.46 -90.02 REMARK 500 2 SER A 52 168.13 164.02 REMARK 500 2 VAL A 55 -69.13 -98.28 REMARK 500 2 ALA A 65 36.37 -90.50 REMARK 500 2 SER A 67 152.84 -42.22 REMARK 500 2 GLN A 81 -155.47 37.83 REMARK 500 3 ASP A 19 -35.68 -152.21 REMARK 500 3 MET A 22 -95.22 -85.49 REMARK 500 3 ALA A 35 88.96 -54.86 REMARK 500 3 GLN A 37 157.63 -42.24 REMARK 500 3 PRO A 58 6.87 -69.44 REMARK 500 3 ALA A 65 30.32 -91.66 REMARK 500 3 SER A 67 179.69 -48.85 REMARK 500 4 ILE A 18 -27.96 -37.45 REMARK 500 4 ASP A 19 -34.46 -155.68 REMARK 500 4 MET A 22 -98.03 -124.73 REMARK 500 4 ALA A 26 150.97 -42.43 REMARK 500 4 ALA A 38 41.12 -89.42 REMARK 500 4 SER A 52 158.72 167.42 REMARK 500 4 GLN A 53 -164.82 -106.15 REMARK 500 4 VAL A 55 -69.25 -94.72 REMARK 500 4 SER A 67 157.22 -43.61 REMARK 500 5 ASP A 19 19.35 -162.22 REMARK 500 5 THR A 20 -166.40 -114.93 REMARK 500 5 MET A 22 -98.43 -97.89 REMARK 500 5 ALA A 26 163.23 -41.42 REMARK 500 5 ALA A 35 89.77 -62.21 REMARK 500 5 ALA A 38 40.29 -90.15 REMARK 500 5 SER A 52 167.07 166.28 REMARK 500 5 VAL A 55 -67.60 -91.58 REMARK 500 5 ALA A 65 30.68 -89.87 REMARK 500 5 SER A 67 -176.07 -50.99 REMARK 500 5 GLN A 81 94.10 -53.27 REMARK 500 6 ILE A 18 -25.21 -39.98 REMARK 500 6 ASP A 19 -39.59 -147.52 REMARK 500 6 MET A 22 -121.58 -97.13 REMARK 500 6 ALA A 26 153.00 -47.01 REMARK 500 6 SER A 52 166.27 168.88 REMARK 500 6 PRO A 58 5.06 -69.72 REMARK 500 6 ALA A 65 38.31 -90.46 REMARK 500 6 SER A 67 178.16 -51.62 REMARK 500 7 ILE A 18 -26.65 -38.72 REMARK 500 7 ASP A 19 -37.43 -152.19 REMARK 500 7 MET A 22 -88.23 -85.05 REMARK 500 7 ALA A 26 163.59 -44.90 REMARK 500 7 ALA A 35 95.54 -57.34 REMARK 500 7 SER A 52 161.40 177.51 REMARK 500 7 VAL A 55 -60.64 -97.96 REMARK 500 7 ILE A 59 78.54 -109.61 REMARK 500 7 ALA A 65 35.50 -96.11 REMARK 500 7 SER A 67 163.74 -43.16 REMARK 500 8 ILE A 18 -33.18 -37.78 REMARK 500 8 ASP A 19 8.36 -156.58 REMARK 500 8 MET A 22 -106.55 -118.26 REMARK 500 8 ALA A 26 150.02 -42.80 REMARK 500 8 ALA A 38 49.15 -89.79 REMARK 500 8 SER A 52 167.85 167.70 REMARK 500 8 VAL A 55 -71.23 -95.17 REMARK 500 8 ALA A 65 34.10 -89.49 REMARK 500 8 SER A 67 -177.74 -50.52 REMARK 500 8 GLN A 81 92.46 -50.60 REMARK 500 9 THR A 20 -169.61 -72.11 REMARK 500 9 LYS A 21 87.46 -150.51 REMARK 500 9 MET A 22 -101.57 -79.88 REMARK 500 9 ALA A 26 162.86 -43.58 REMARK 500 9 ALA A 35 109.43 -43.15 REMARK 500 9 ALA A 38 47.60 -90.39 REMARK 500 9 SER A 52 164.33 174.52 REMARK 500 9 VAL A 55 -70.75 -102.81 REMARK 500 9 ILE A 59 77.45 -107.71 REMARK 500 9 ALA A 65 34.95 -95.83 REMARK 500 9 SER A 67 -176.32 -50.84 REMARK 500 10 ILE A 18 -75.73 -90.44 REMARK 500 10 MET A 22 -119.52 -117.65 REMARK 500 10 ALA A 26 154.17 -43.21 REMARK 500 10 VAL A 55 -71.14 -93.13 REMARK 500 10 PRO A 58 8.09 -68.91 REMARK 500 10 ALA A 65 32.80 -90.13 REMARK 500 10 SER A 67 174.83 -47.74 REMARK 500 11 ASP A 19 -27.00 -157.77 REMARK 500 11 THR A 20 -173.84 -68.86 REMARK 500 11 MET A 22 -132.19 -107.88 REMARK 500 11 ALA A 26 170.28 -44.97 REMARK 500 11 ALA A 38 46.05 -86.20 REMARK 500 11 SER A 52 166.68 162.11 REMARK 500 11 GLN A 53 -165.26 -100.16 REMARK 500 11 VAL A 55 -67.73 -95.50 REMARK 500 11 PRO A 58 8.25 -69.46 REMARK 500 11 ALA A 65 36.14 -93.67 REMARK 500 12 ILE A 18 -29.03 -36.78 REMARK 500 12 ASP A 19 -32.33 -153.45 REMARK 500 12 MET A 22 -108.08 -125.22 REMARK 500 12 ALA A 35 101.70 -55.70 REMARK 500 12 ALA A 38 41.57 -90.07 REMARK 500 12 VAL A 55 -74.01 -99.16 REMARK 500 12 SER A 67 -178.66 -49.68 REMARK 500 12 GLN A 81 -167.89 -57.61 REMARK 500 13 ILE A 18 -73.78 -90.80 REMARK 500 13 THR A 20 -161.10 -77.40 REMARK 500 13 MET A 22 -113.90 -121.58 REMARK 500 13 ALA A 26 157.50 -42.60 REMARK 500 13 ALA A 38 42.12 -88.02 REMARK 500 13 SER A 52 163.50 172.62 REMARK 500 13 VAL A 55 -67.09 -103.91 REMARK 500 13 PRO A 58 5.06 -69.72 REMARK 500 13 ALA A 65 36.94 -96.80 REMARK 500 13 GLN A 81 96.14 -40.62 REMARK 500 14 ILE A 18 -29.49 -37.36 REMARK 500 14 ASP A 19 -36.13 -151.75 REMARK 500 14 MET A 22 -88.75 -127.27 REMARK 500 14 ALA A 26 149.41 -38.91 REMARK 500 14 ALA A 35 103.66 -44.00 REMARK 500 14 SER A 52 167.89 169.14 REMARK 500 14 VAL A 55 -68.34 -99.38 REMARK 500 14 PRO A 58 9.73 -69.32 REMARK 500 14 ALA A 65 34.90 -90.66 REMARK 500 14 SER A 67 173.31 -47.06 REMARK 500 15 ILE A 18 -35.42 -37.16 REMARK 500 15 ASP A 19 9.24 -151.78 REMARK 500 15 THR A 20 -160.54 -112.69 REMARK 500 15 MET A 22 -99.57 -140.83 REMARK 500 15 ALA A 26 152.63 -42.60 REMARK 500 15 ALA A 35 109.04 -57.69 REMARK 500 15 ALA A 38 39.45 -88.85 REMARK 500 15 VAL A 55 -70.23 -96.88 REMARK 500 15 SER A 67 174.27 -46.80 REMARK 500 16 ILE A 18 -62.49 -90.36 REMARK 500 16 MET A 22 -132.18 -97.22 REMARK 500 16 ALA A 26 153.72 -46.02 REMARK 500 16 SER A 52 170.42 172.60 REMARK 500 16 VAL A 55 -65.60 -105.89 REMARK 500 16 PRO A 58 6.72 -69.74 REMARK 500 16 ALA A 65 48.86 -100.53 REMARK 500 16 GLN A 81 93.76 -45.07 REMARK 500 17 ILE A 18 -28.84 -38.65 REMARK 500 17 ASP A 19 -32.10 -149.95 REMARK 500 17 THR A 20 -161.79 -68.90 REMARK 500 17 MET A 22 -100.54 -131.90 REMARK 500 17 ALA A 35 106.98 -54.09 REMARK 500 17 ALA A 38 42.85 -84.59 REMARK 500 17 SER A 52 166.79 167.10 REMARK 500 17 VAL A 55 -68.47 -96.87 REMARK 500 17 PRO A 58 8.04 -69.73 REMARK 500 17 ALA A 65 43.66 -86.90 REMARK 500 17 SER A 67 -171.02 -53.36 REMARK 500 17 GLN A 81 129.93 -33.66 REMARK 500 18 ILE A 18 -29.78 -36.20 REMARK 500 18 ASP A 19 18.04 -161.04 REMARK 500 18 MET A 22 -112.93 -95.16 REMARK 500 18 ALA A 38 46.73 -84.82 REMARK 500 18 SER A 52 171.72 167.21 REMARK 500 18 PRO A 58 7.47 -69.70 REMARK 500 18 ILE A 59 78.04 -108.11 REMARK 500 18 ALA A 65 35.18 -89.41 REMARK 500 18 SER A 67 153.76 -42.41 REMARK 500 19 ASP A 2 169.48 -49.69 REMARK 500 19 ILE A 18 -26.41 -39.73 REMARK 500 19 ASP A 19 -35.34 -150.62 REMARK 500 19 THR A 20 -164.77 -69.06 REMARK 500 19 MET A 22 -91.63 -86.55 REMARK 500 19 ALA A 26 151.65 -43.07 REMARK 500 19 ALA A 35 109.94 -57.55 REMARK 500 19 SER A 52 167.91 171.72 REMARK 500 19 VAL A 55 -68.21 -98.53 REMARK 500 19 SER A 67 159.81 -43.45 REMARK 500 19 GLN A 81 -177.57 -49.94 REMARK 500 20 ILE A 18 -73.49 -90.27 REMARK 500 20 MET A 22 -125.34 -88.54 REMARK 500 20 ALA A 26 154.75 -42.81 REMARK 500 20 ALA A 38 51.31 -90.13 REMARK 500 20 SER A 52 165.03 166.47 REMARK 500 20 VAL A 55 -64.44 -91.95 REMARK 500 20 ALA A 65 32.64 -95.45 REMARK 500 20 SER A 67 175.60 -47.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 83
DBREF 1DVV A 1 82 UNP P00099 CY551_PSEAE 23 104
SEQADV 1DVV ALA A 7 UNP P00099 PHE 29 MUTATION SEQADV 1DVV MET A 13 UNP P00099 VAL 35 MUTATION SEQADV 1DVV TYR A 34 UNP P00099 PHE 56 MUTATION SEQADV 1DVV TYR A 43 UNP P00099 GLU 65 MUTATION SEQADV 1DVV ILE A 78 UNP P00099 VAL 100 MUTATION
SEQRES 1 A 82 GLU ASP PRO GLU VAL LEU ALA LYS ASN LYS GLY CYS MET SEQRES 2 A 82 ALA CYS HIS ALA ILE ASP THR LYS MET VAL GLY PRO ALA SEQRES 3 A 82 TYR LYS ASP VAL ALA ALA LYS TYR ALA GLY GLN ALA GLY SEQRES 4 A 82 ALA GLU ALA TYR LEU ALA GLN ARG ILE LYS ASN GLY SER SEQRES 5 A 82 GLN GLY VAL TRP GLY PRO ILE PRO MET PRO PRO ASN ALA SEQRES 6 A 82 VAL SER ASP ASP GLU ALA GLN THR LEU ALA LYS TRP ILE SEQRES 7 A 82 LEU SER GLN LYS
HET HEM A 83 74
HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE
HETSYN HEM HEME
FORMUL 2 HEM C34 H32 FE N4 O4
HELIX 1 1 ASP A 2 LYS A 10 1 9 HELIX 2 2 GLY A 11 HIS A 16 1 6 HELIX 3 3 ALA A 26 ALA A 35 1 10 HELIX 4 4 GLY A 39 LYS A 49 1 11 HELIX 5 5 SER A 67 GLN A 81 1 15
LINK NE2 HIS A 16 FE HEM A 83 1555 1555 2.51
SITE 1 AC1 22 LYS A 10 GLY A 11 CYS A 12 CYS A 15 SITE 2 AC1 22 HIS A 16 VAL A 23 PRO A 25 LEU A 44 SITE 3 AC1 22 ARG A 47 ILE A 48 SER A 52 GLN A 53 SITE 4 AC1 22 VAL A 55 TRP A 56 GLY A 57 ILE A 59 SITE 5 AC1 22 PRO A 60 MET A 61 PRO A 62 ASN A 64 SITE 6 AC1 22 LEU A 74 ILE A 78
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000