10 20 30 40 50 60 70 80 1DTF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 27-APR-99 1DTF
TITLE PEPTIDE DEFORMYLASE:THIORPHAN DOCKING MODEL 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PEPTIDE DEFORMYLASE); COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.1.31; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 GENE: FMS; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI
KEYWDS DEFORMYLASE, THIORPHAN
EXPDTA THEORETICAL MODEL
AUTHOR S.RAGUSA,P.MOUCHET,C.LAZENNEC,V.DIVE,T.MEINNEL
REVDAT 1 24-APR-00 1DTF 0
JRNL AUTH S.RAGUSA,P.MOUCHET,C.LAZENNEC,V.DIVE,T.MEINNEL JRNL TITL SUBSTRATE RECOGNITION AND SELECTIVITY OF PEPTIDE JRNL TITL 2 DEFORMYLASE. SIMILARITIES AND DIFFERENCES WITH JRNL TITL 3 METZINCINS AND THERMOLYSIN. JRNL REF J.MOL.BIOL. V. 289 1445 1999 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.K.CHAN,W.GONG,P.T.R.RAJAGOPALAN,B.HAO,C.M.TSAI REMARK 1 TITL CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI PEPTIDE REMARK 1 TITL 2 DEFORMYLASE REMARK 1 REF BIOCHEMISTRY V. 36 13904 1997 REMARK 1 PUBL AMERICAN CHEMICAL SOCIETY REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.GRAMS,P.REINEMER,J.C.POWERS,T.KLEINE,M.PIEPER, REMARK 1 AUTH 2 H.TSCHESCHE,R.HUBER,W.BODE REMARK 1 TITL X_RAY STRUCTURE OF HUMAN NEUTROPHIL COLLAGENASE REMARK 1 TITL 2 COMPLEXED WITH PEPTIDE HYDROXAMATE AND PEPTIDE REMARK 1 TITL 3 THIOL INHIBITORS REMARK 1 REF EUR.J.BIOCHEM. V. 228 830 1995 REMARK 1 REFN ASTM EJBCAI IX ISSN 0014-2956
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NO REFINEMENT
REMARK 4 REMARK 4 1DTF COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE RCSB ID CODE IS RCSB000960.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 165 REMARK 465 ALA A 166 REMARK 465 ARG A 167 REMARK 465 ALA A 168
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O GLY A 89 C2' BTP I 1 2.07 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 34 SD MET A 34 CE -0.177 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 8 N - CA - C ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO A 9 C - N - CD ANGL. DEV. = 10.9 DEGREES REMARK 500 LEU A 99 CA - CB - CG ANGL. DEV. = 11.6 DEGREES
DBREF 1DTF A 1 164 UNP P0A6K3 DEF_ECOLI 1 168
SEQRES 1 A 168 SER VAL LEU GLN VAL LEU HIS ILE PRO ASP GLU ARG LEU SEQRES 2 A 168 ARG LYS VAL ALA LYS PRO VAL GLU GLU VAL ASN ALA GLU SEQRES 3 A 168 ILE GLN ARG ILE VAL ASP ASP MET PHE GLU THR MET TYR SEQRES 4 A 168 ALA GLU GLU GLY ILE GLY LEU ALA ALA THR GLN VAL ASP SEQRES 5 A 168 ILE HIS GLN ARG ILE ILE VAL ILE ASP VAL SER GLU ASN SEQRES 6 A 168 ARG ASP GLU ARG LEU VAL LEU ILE ASN PRO GLU LEU LEU SEQRES 7 A 168 GLU LYS SER GLY GLU THR GLY ILE GLU GLU GLY CYS LEU SEQRES 8 A 168 SER ILE PRO GLU GLN ARG ALA LEU VAL PRO ARG ALA GLU SEQRES 9 A 168 LYS VAL LYS ILE ARG ALA LEU ASP ARG ASP GLY LYS PRO SEQRES 10 A 168 PHE GLU LEU GLU ALA ASP GLY LEU LEU ALA ILE CYS ILE SEQRES 11 A 168 GLN HIS GLU MET ASP HIS LEU VAL GLY LYS LEU PHE MET SEQRES 12 A 168 ASP TYR LEU SER PRO LEU LYS GLN GLN ARG ILE ARG GLN SEQRES 13 A 168 LYS VAL GLU LYS LEU ASP ARG LEU LYS ALA ARG ALA
HET ZN A 200 1 HET ASP I 2 6 HET BTP I 1 12 HET GM1 I 3 8
HETNAM ZN ZINC ION HETNAM ASP ASPARTIC ACID HETNAM BTP 2-THIOMETHYL-3-PHENYLPROPANOIC ACID HETNAM GM1 AMINOMETHYLAMIDE
HETSYN GM1 GLYCINAMID
FORMUL 2 ZN ZN 2+ FORMUL 3 ASP C4 H7 N O4 FORMUL 4 BTP C10 H12 O2 S FORMUL 5 GM1 C2 H6 N2 O
HELIX 1 1 GLU A 11 ARG A 14 5 4 HELIX 2 2 ALA A 25 ALA A 40 1 16 HELIX 3 3 ALA A 48 VAL A 51 5 4 HELIX 4 4 GLY A 124 VAL A 138 1 15 HELIX 5 5 PHE A 142 TYR A 145 5 4 HELIX 6 6 PRO A 148 ASP A 162 1 15
SHEET 1 A 3 GLY A 45 ALA A 47 0 SHEET 2 A 3 ILE A 57 ILE A 60 -1 N VAL A 59 O LEU A 46 SHEET 3 A 3 LEU A 70 ILE A 73 -1 N LEU A 72 O ILE A 58 SHEET 1 B 3 PRO A 117 LEU A 120 0 SHEET 2 B 3 LYS A 105 LEU A 111 -1 N ALA A 110 O PHE A 118 SHEET 3 B 3 GLU A 76 SER A 81 -1 N SER A 81 O LYS A 105
LINK C1 BTP I 1 N ASP I 2 LINK C ASP I 2 N2 GM1 I 3 LINK ZN ZN A 200 NE2 HIS A 132 LINK ZN ZN A 200 NE2 HIS A 136
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000