10 20 30 40 50 60 70 80 1DPM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 13-FEB-96 1DPM
TITLE THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING TITLE 2 PHOSPHOTRIESTERASE WITH BOUND SUBSTRATE ANALOG DIETHYL 4- TITLE 3 METHYLBENZYLPHOSPHONATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293
KEYWDS HYDROLASE, MEMBRANE, PLASMID, SIGNAL, ZINC
EXPDTA X-RAY DIFFRACTION
AUTHOR J.L.VANHOOKE,M.M.BENNING,F.M.RAUSHEL,H.M.HOLDEN
REVDAT 2 24-FEB-09 1DPM 1 VERSN REVDAT 1 20-AUG-97 1DPM 0
JRNL AUTH J.L.VANHOOKE,M.M.BENNING,F.M.RAUSHEL,H.M.HOLDEN JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE ZINC-CONTAINING JRNL TITL 2 PHOSPHOTRIESTERASE WITH THE BOUND SUBSTRATE ANALOG JRNL TITL 3 DIETHYL 4-METHYLBENZYLPHOSPHONATE. JRNL REF BIOCHEMISTRY V. 35 6020 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8634243 JRNL DOI 10.1021/BI960325L
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41252 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5024 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.016 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.300 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 16.500; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.007 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.011 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DPM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41252 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 363 CG CD NE CZ NH1 NH2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 115 CD GLU A 115 OE1 0.071 REMARK 500 ARG A 118 CD ARG A 118 NE 0.167 REMARK 500 GLU A 210 CD GLU A 210 OE1 0.069 REMARK 500 GLU A 263 CD GLU A 263 OE1 0.087 REMARK 500 GLU A 338 CD GLU A 338 OE2 0.080 REMARK 500 GLU A 344 CD GLU A 344 OE1 0.073 REMARK 500 GLU B 48 CD GLU B 48 OE2 0.073 REMARK 500 GLU B 115 CD GLU B 115 OE1 0.075 REMARK 500 GLU B 144 CD GLU B 144 OE1 0.076 REMARK 500 GLU B 181 CD GLU B 181 OE1 0.071 REMARK 500 GLU B 210 CD GLU B 210 OE1 0.073 REMARK 500 GLU B 263 CD GLU B 263 OE1 0.072 REMARK 500 GLU B 344 CD GLU B 344 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 109 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 139 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 208 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 232 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 232 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 235 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 264 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 280 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 301 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 315 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 356 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 356 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 100 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 109 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 121 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 121 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 133 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 139 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 139 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 141 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 232 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 232 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 253 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 253 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 GLU B 263 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 280 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 301 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 323 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP B 323 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -135.96 -141.21 REMARK 500 VAL A 101 33.01 -86.32 REMARK 500 TRP A 131 -146.91 -103.35 REMARK 500 GLU A 159 -133.69 53.05 REMARK 500 ALA A 203 78.28 -116.04 REMARK 500 ASP A 236 83.25 -67.65 REMARK 500 SER A 308 31.37 -81.48 REMARK 500 SER B 61 -139.25 -140.82 REMARK 500 TRP B 69 57.44 -142.92 REMARK 500 TRP B 131 -139.21 -104.90 REMARK 500 GLU B 159 -133.31 51.85 REMARK 500 THR B 173 71.99 -151.92 REMARK 500 VAL B 351 -51.46 -120.60 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT A 902 O1 REMARK 620 2 HIS A 201 ND1 100.2 REMARK 620 3 HIS A 230 NE2 108.1 95.4 REMARK 620 4 HOH A 909 O 98.6 137.1 114.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 800 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT A 902 O2 REMARK 620 2 HIS A 55 NE2 100.5 REMARK 620 3 HIS A 57 NE2 92.2 117.0 REMARK 620 4 ASP A 301 OD1 170.9 83.0 78.7 REMARK 620 5 HOH A 909 O 83.2 112.7 130.1 103.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT B 904 O1 REMARK 620 2 HIS B 55 NE2 97.5 REMARK 620 3 HIS B 57 NE2 92.1 111.1 REMARK 620 4 ASP B 301 OD1 178.3 83.7 86.3 REMARK 620 5 HOH B 924 O 84.6 119.4 129.4 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT B 904 O2 REMARK 620 2 HIS B 201 ND1 100.5 REMARK 620 3 HIS B 230 NE2 103.0 90.6 REMARK 620 4 HOH B 924 O 107.7 138.4 111.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 802 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 803 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP A 900 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP A 901 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP B 902 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EBP B 903 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 902 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 904
DBREF 1DPM A 36 363 UNP P0A434 OPD_BREDI 36 363 DBREF 1DPM B 36 363 UNP P0A434 OPD_BREDI 36 363
SEQRES 1 A 329 ALA ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 A 329 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 A 329 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 A 329 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 A 329 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 A 329 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 A 329 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 A 329 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 A 329 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 A 329 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 A 329 ALA GLY ILE ILE LYS VAL ALA THR THR GLY LYS ALA THR SEQRES 12 A 329 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 A 329 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 A 329 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 A 329 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 A 329 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 A 329 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 A 329 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 A 329 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 A 329 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 A 329 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 A 329 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 A 329 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 A 329 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 A 329 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 A 329 PRO THR LEU ARG SEQRES 1 B 329 ALA ARG ILE ASN THR VAL ARG GLY PRO ILE THR ILE SER SEQRES 2 B 329 GLU ALA GLY PHE THR LEU THR HIS GLU HIS ILE CYS GLY SEQRES 3 B 329 SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU PHE PHE SEQRES 4 B 329 GLY SER ARG LYS ALA LEU ALA GLU LYS ALA VAL ARG GLY SEQRES 5 B 329 LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR ILE VAL SEQRES 6 B 329 ASP VAL SER THR PHE ASP ILE GLY ARG ASP VAL SER LEU SEQRES 7 B 329 LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS ILE VAL SEQRES 8 B 329 ALA ALA THR GLY LEU TRP PHE ASP PRO PRO LEU SER MET SEQRES 9 B 329 ARG LEU ARG SER VAL GLU GLU LEU THR GLN PHE PHE LEU SEQRES 10 B 329 ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY ILE ARG SEQRES 11 B 329 ALA GLY ILE ILE LYS VAL ALA THR THR GLY LYS ALA THR SEQRES 12 B 329 PRO PHE GLN GLU LEU VAL LEU LYS ALA ALA ALA ARG ALA SEQRES 13 B 329 SER LEU ALA THR GLY VAL PRO VAL THR THR HIS THR ALA SEQRES 14 B 329 ALA SER GLN ARG ASP GLY GLU GLN GLN ALA ALA ILE PHE SEQRES 15 B 329 GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS ILE GLY SEQRES 16 B 329 HIS SER ASP ASP THR ASP ASP LEU SER TYR LEU THR ALA SEQRES 17 B 329 LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP HIS ILE SEQRES 18 B 329 PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SER ALA SEQRES 19 B 329 SER ALA LEU LEU GLY ILE ARG SER TRP GLN THR ARG ALA SEQRES 20 B 329 LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR MET LYS SEQRES 21 B 329 GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY PHE SER SEQRES 22 B 329 SER TYR VAL THR ASN ILE MET ASP VAL MET ASP ARG VAL SEQRES 23 B 329 ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG VAL ILE SEQRES 24 B 329 PRO PHE LEU ARG GLU LYS GLY VAL PRO GLN GLU THR LEU SEQRES 25 B 329 ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE LEU SER SEQRES 26 B 329 PRO THR LEU ARG
HET ZN A 800 1 HET ZN A 801 1 HET ZN B 802 1 HET ZN B 803 1 HET EBP A 900 16 HET EBP A 901 16 HET EBP B 902 16 HET EBP B 903 16 HET FMT A 902 3 HET FMT B 904 3
HETNAM ZN ZINC ION HETNAM EBP DIETHYL 4-METHYLBENZYLPHOSPHONATE HETNAM FMT FORMIC ACID
FORMUL 3 ZN 4(ZN 2+) FORMUL 7 EBP 4(C12 H19 O3 P) FORMUL 11 FMT 2(C H2 O2) FORMUL 13 HOH *263(H2 O)
HELIX 1 1 ILE A 46 ALA A 49 5 4 HELIX 2 2 PHE A 65 ALA A 68 1 4 HELIX 3 3 PRO A 70 PHE A 73 5 4 HELIX 4 4 ARG A 76 ALA A 92 1 17 HELIX 5 5 PHE A 104 ILE A 106 5 3 HELIX 6 6 VAL A 110 ALA A 120 1 11 HELIX 7 7 LEU A 136 ARG A 139 1 4 HELIX 8 8 VAL A 143 GLN A 155 1 13 HELIX 9 9 PRO A 178 THR A 194 1 17 HELIX 10 10 ALA A 204 GLN A 206 5 3 HELIX 11 11 ASP A 208 GLU A 219 1 12 HELIX 12 12 PRO A 223 ARG A 225 5 3 HELIX 13 13 SER A 231 ASP A 233 5 3 HELIX 14 14 LEU A 237 ALA A 245 1 9 HELIX 15 15 ALA A 266 LEU A 272 1 7 HELIX 16 16 TRP A 277 ASP A 289 1 13 HELIX 17 17 MET A 293 GLN A 295 5 3 HELIX 18 18 ILE A 313 VAL A 320 1 8 HELIX 19 19 GLY A 324 GLU A 338 5 15 HELIX 20 20 GLN A 343 THR A 350 1 8 HELIX 21 21 THR A 352 LEU A 358 1 7 HELIX 22 22 ILE B 46 ALA B 49 1 4 HELIX 23 23 PHE B 65 ALA B 68 1 4 HELIX 24 24 PRO B 70 PHE B 73 5 4 HELIX 25 25 ARG B 76 ALA B 93 1 18 HELIX 26 26 PHE B 104 ILE B 106 5 3 HELIX 27 27 VAL B 110 ALA B 120 1 11 HELIX 28 28 LEU B 136 ARG B 139 1 4 HELIX 29 29 VAL B 143 GLN B 155 1 13 HELIX 30 30 PRO B 178 THR B 194 1 17 HELIX 31 31 ALA B 204 GLN B 206 5 3 HELIX 32 32 ASP B 208 SER B 218 1 11 HELIX 33 33 PRO B 223 ARG B 225 5 3 HELIX 34 34 SER B 231 ASP B 233 5 3 HELIX 35 35 LEU B 237 ARG B 246 1 10 HELIX 36 36 ALA B 266 LEU B 272 1 7 HELIX 37 37 TRP B 277 ASP B 289 1 13 HELIX 38 38 MET B 293 GLN B 295 5 3 HELIX 39 39 ILE B 313 VAL B 320 1 8 HELIX 40 40 GLY B 324 LEU B 330 5 7 HELIX 41 41 VAL B 332 GLU B 338 1 7 HELIX 42 42 GLN B 343 THR B 350 1 8 HELIX 43 43 THR B 352 LEU B 358 1 7
SHEET 1 A 2 ARG A 36 THR A 39 0 SHEET 2 A 2 GLY A 42 THR A 45 -1 N ILE A 44 O ILE A 37 SHEET 1 B 2 THR A 97 VAL A 99 0 SHEET 2 B 2 HIS A 123 VAL A 125 1 N HIS A 123 O ILE A 98 SHEET 1 C 4 ALA A 127 GLY A 129 0 SHEET 2 C 4 ILE A 167 ALA A 171 1 N ILE A 167 O THR A 128 SHEET 3 C 4 PRO A 197 HIS A 201 1 N PRO A 197 O ILE A 168 SHEET 4 C 4 VAL A 226 ILE A 228 1 N CYS A 227 O VAL A 198 SHEET 1 D 2 ILE A 250 LEU A 252 0 SHEET 2 D 2 ILE A 296 VAL A 298 1 N LEU A 297 O ILE A 250 SHEET 1 E 2 ARG B 36 THR B 39 0 SHEET 2 E 2 GLY B 42 THR B 45 -1 N ILE B 44 O ILE B 37 SHEET 1 F 2 THR B 97 VAL B 99 0 SHEET 2 F 2 HIS B 123 VAL B 125 1 N HIS B 123 O ILE B 98 SHEET 1 G 4 ALA B 127 GLY B 129 0 SHEET 2 G 4 ILE B 167 ALA B 171 1 N ILE B 167 O THR B 128 SHEET 3 G 4 VAL B 198 HIS B 201 1 N THR B 199 O ILE B 168 SHEET 4 G 4 VAL B 226 ILE B 228 1 N CYS B 227 O VAL B 198 SHEET 1 H 2 ILE B 250 LEU B 252 0 SHEET 2 H 2 ILE B 296 VAL B 298 1 N LEU B 297 O ILE B 250
LINK C FMT A 902 NZ LYS A 169 1555 1555 1.46 LINK O1 FMT A 902 ZN ZN A 801 1555 1555 1.81 LINK O2 FMT A 902 ZN ZN A 800 1555 1555 2.38 LINK C FMT B 904 NZ LYS B 169 1555 1555 1.46 LINK O1 FMT B 904 ZN ZN B 802 1555 1555 2.20 LINK O2 FMT B 904 ZN ZN B 803 1555 1555 1.82 LINK ZN ZN A 800 NE2 HIS A 55 1555 1555 1.84 LINK ZN ZN A 800 NE2 HIS A 57 1555 1555 1.92 LINK ZN ZN A 800 OD1 ASP A 301 1555 1555 2.38 LINK ZN ZN A 801 ND1 HIS A 201 1555 1555 2.15 LINK ZN ZN A 801 NE2 HIS A 230 1555 1555 2.01 LINK ZN ZN B 802 NE2 HIS B 55 1555 1555 1.92 LINK ZN ZN B 802 NE2 HIS B 57 1555 1555 2.02 LINK ZN ZN B 802 OD1 ASP B 301 1555 1555 2.34 LINK ZN ZN B 803 ND1 HIS B 201 1555 1555 2.00 LINK ZN ZN B 803 NE2 HIS B 230 1555 1555 2.15 LINK ZN ZN A 800 O HOH A 909 1555 1555 1.93 LINK ZN ZN A 801 O HOH A 909 1555 1555 1.93 LINK ZN ZN B 802 O HOH B 924 1555 1555 1.97 LINK ZN ZN B 803 O HOH B 924 1555 1555 2.00
SITE 1 AC1 6 HIS A 55 HIS A 57 ASP A 301 ZN A 801 SITE 2 AC1 6 FMT A 902 HOH A 909 SITE 1 AC2 7 HIS A 55 HIS A 201 HIS A 230 ZN A 800 SITE 2 AC2 7 EBP A 900 FMT A 902 HOH A 909 SITE 1 AC3 6 HIS B 55 HIS B 57 ASP B 301 ZN B 803 SITE 2 AC3 6 FMT B 904 HOH B 924 SITE 1 AC4 6 HIS B 201 HIS B 230 ZN B 802 EBP B 902 SITE 2 AC4 6 FMT B 904 HOH B 924 SITE 1 AC5 7 TRP A 131 HIS A 201 HIS A 257 LEU A 271 SITE 2 AC5 7 ASP A 301 MET A 317 ZN A 801 SITE 1 AC6 4 ARG A 152 GLN A 155 TYR A 156 PHE B 51 SITE 1 AC7 8 TRP B 131 HIS B 201 HIS B 257 LEU B 271 SITE 2 AC7 8 ASP B 301 MET B 317 ZN B 803 HOH B 924 SITE 1 AC8 4 GLU A 71 GLN B 155 TYR B 156 ARG B 164 SITE 1 AC9 8 HIS A 55 HIS A 57 LYS A 169 HIS A 201 SITE 2 AC9 8 HIS A 230 ZN A 800 ZN A 801 HOH A 909 SITE 1 BC1 8 HIS B 55 HIS B 57 LYS B 169 HIS B 201 SITE 2 BC1 8 HIS B 230 ZN B 802 ZN B 803 HOH B 924
CRYST1 129.600 91.400 69.400 90.00 91.90 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007716 0.000000 0.000256 0.00000
SCALE2 0.000000 0.010941 0.000000 0.00000
SCALE3 0.000000 0.000000 0.014417 0.00000