10 20 30 40 50 60 70 80 1DOW - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 21-DEC-99 1DOW
TITLE CRYSTAL STRUCTURE OF A CHIMERA OF BETA-CATENIN AND ALPHA- TITLE 2 CATENIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-CATENIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DIMERIZATION AND BETA-CATENIN BINDING REGION; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-CATENIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: ALPHA-CATENIN BINDING REGION; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS FOUR-HELIX BUNDLE, CELL ADHESION
EXPDTA X-RAY DIFFRACTION
AUTHOR S.POKUTTA,W.I.WEIS
REVDAT 2 24-FEB-09 1DOW 1 VERSN REVDAT 1 12-JUL-00 1DOW 0
JRNL AUTH S.POKUTTA,W.I.WEIS JRNL TITL STRUCTURE OF THE DIMERIZATION AND JRNL TITL 2 BETA-CATENIN-BINDING REGION OF ALPHA-CATENIN. JRNL REF MOL.CELL V. 5 533 2000 JRNL REFN ISSN 1097-2765 JRNL PMID 10882138 JRNL DOI 10.1016/S1097-2765(00)80447-5
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH AND HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 309534.830 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 36760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2863 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2945 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.87000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : 6.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 16.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.83 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.280 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.400 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 38.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DOW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-00. REMARK 100 THE RCSB ID CODE IS RCSB010254.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9252 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.21200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MONOMETHYLETHER, HEPES, REMARK 280 UREA, ETHANOL, DITHIOTHREITOL, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295.0K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
DBREF 1DOW A 57 261 UNP P26231 CTN1_MOUSE 57 261 DBREF 1DOW B 118 149 UNP Q02248 CTNB1_MOUSE 118 149
SEQADV 1DOW MSE A 104 UNP P26231 MET 104 MODIFIED RESIDUE SEQADV 1DOW MSE A 124 UNP P26231 MET 124 MODIFIED RESIDUE SEQADV 1DOW MSE A 144 UNP P26231 MET 144 MODIFIED RESIDUE SEQADV 1DOW MSE A 190 UNP P26231 MET 190 MODIFIED RESIDUE SEQADV 1DOW MSE A 207 UNP P26231 MET 207 MODIFIED RESIDUE SEQADV 1DOW MSE B 131 UNP Q02248 MET 131 MODIFIED RESIDUE
SEQRES 1 A 205 LYS ALA HIS VAL LEU ALA ALA SER VAL GLU GLN ALA THR SEQRES 2 A 205 GLU ASN PHE LEU GLU LYS GLY ASP LYS ILE ALA LYS GLU SEQRES 3 A 205 SER GLN PHE LEU LYS GLU GLU LEU VAL VAL ALA VAL GLU SEQRES 4 A 205 ASP VAL ARG LYS GLN GLY ASP LEU MSE LYS SER ALA ALA SEQRES 5 A 205 GLY GLU PHE ALA ASP ASP PRO CYS SER SER VAL LYS ARG SEQRES 6 A 205 GLY ASN MSE VAL ARG ALA ALA ARG ALA LEU LEU SER ALA SEQRES 7 A 205 VAL THR ARG LEU LEU ILE LEU ALA ASP MSE ALA ASP VAL SEQRES 8 A 205 TYR LYS LEU LEU VAL GLN LEU LYS VAL VAL GLU ASP GLY SEQRES 9 A 205 ILE LEU LYS LEU ARG ASN ALA GLY ASN GLU GLN ASP LEU SEQRES 10 A 205 GLY ILE GLN TYR LYS ALA LEU LYS PRO GLU VAL ASP LYS SEQRES 11 A 205 LEU ASN ILE MSE ALA ALA LYS ARG GLN GLN GLU LEU LYS SEQRES 12 A 205 ASP VAL GLY ASN ARG ASP GLN MSE ALA ALA ALA ARG GLY SEQRES 13 A 205 ILE LEU GLN LYS ASN VAL PRO ILE LEU TYR THR ALA SER SEQRES 14 A 205 GLN ALA CYS LEU GLN HIS PRO ASP VAL ALA ALA TYR LYS SEQRES 15 A 205 ALA ASN ARG ASP LEU ILE TYR LYS GLN LEU GLN GLN ALA SEQRES 16 A 205 VAL THR GLY ILE SER ASN ALA ALA GLN ALA SEQRES 1 B 32 HIS PRO THR ASN VAL GLN ARG LEU ALA GLU PRO SER GLN SEQRES 2 B 32 MSE LEU LYS HIS ALA VAL VAL ASN LEU ILE ASN TYR GLN SEQRES 3 B 32 ASP ASP ALA GLU LEU ALA
MODRES 1DOW MSE A 104 MET SELENOMETHIONINE MODRES 1DOW MSE A 124 MET SELENOMETHIONINE MODRES 1DOW MSE A 144 MET SELENOMETHIONINE MODRES 1DOW MSE A 190 MET SELENOMETHIONINE MODRES 1DOW MSE A 207 MET SELENOMETHIONINE MODRES 1DOW MSE B 131 MET SELENOMETHIONINE
HET MSE A 104 8 HET MSE A 124 8 HET MSE A 144 8 HET MSE A 190 8 HET MSE A 207 8 HET MSE B 131 8
HETNAM MSE SELENOMETHIONINE
FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *252(H2 O)
HELIX 1 1 ALA A 58 SER A 83 1 26 HELIX 2 2 LEU A 86 ASP A 114 1 29 HELIX 3 3 SER A 117 ASN A 166 1 50 HELIX 4 4 ASN A 169 GLN A 196 1 28 HELIX 5 5 ASP A 200 HIS A 231 1 32 HELIX 6 6 VAL A 234 GLN A 260 1 27 HELIX 7 7 THR B 120 TYR B 142 1 23
LINK C LEU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N LYS A 105 1555 1555 1.33 LINK C ASN A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N VAL A 125 1555 1555 1.33 LINK C ASP A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N ALA A 145 1555 1555 1.33 LINK C ILE A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N ALA A 191 1555 1555 1.33 LINK C GLN A 206 N MSE A 207 1555 1555 1.33 LINK C MSE A 207 N ALA A 208 1555 1555 1.33 LINK C GLN B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N LEU B 132 1555 1555 1.33
CRYST1 53.000 62.620 63.660 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018868 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015969 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015708 0.00000