1DOQ - Header Asymmetric Unit

HEADER TRANSFERASE 21-DEC-99 1DOQ

TITLE THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT TITLE 2 FROM THERMUS THERMOPHILUS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET15

KEYWDS TRANSCRIPTION, RNA POLYMERASE, THERMUS THERMOPHILUS, KEYWDS 2 TRANSFERASE

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR T.WADA,T.YAMAZAKI,Y.KYOGOKU

REVDAT 3 24-FEB-09 1DOQ 1 VERSN REVDAT 2 14-JUN-00 1DOQ 1 JRNL REVDAT 1 05-JAN-00 1DOQ 0

JRNL AUTH T.WADA,T.YAMAZAKI,Y.KYOGOKU JRNL TITL THE STRUCTURE AND THE CHARACTERISTIC DNA BINDING JRNL TITL 2 PROPERTY OF THE C-TERMINAL DOMAIN OF THE RNA JRNL TITL 3 POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS. JRNL REF J.BIOL.CHEM. V. 275 16057 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10821859 JRNL DOI 10.1074/JBC.275.21.16057

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 734 NOE- REMARK 3 DERIVED DISTANCE CONSTRAINTS, 43 DIHEDRAL ANGLE RESTRAINTS AND REMARK 3 38 DISTANCE RESTRAINTS FROM HYDROGEN BONDS.

REMARK 4 REMARK 4 1DOQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-DEC-99. REMARK 100 THE RCSB ID CODE IS RCSB010251.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 30MM KCL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 2MM C-TERMINAL DOMAIN OF RNA REMARK 210 POLYMERASE ALPHA SUBUNIT-15N, REMARK 210 13C; 20MM PHOSPHATE BUFFER, REMARK 210 30MM KCL; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, X-PLOR 3.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 249 31.29 -177.55 REMARK 500 LEU A 252 111.98 59.57 REMARK 500 ASP A 253 62.21 -160.11 REMARK 500 SER A 268 -70.61 -52.07 REMARK 500 LYS A 270 -77.38 -48.21 REMARK 500 LEU A 283 89.86 -59.05 REMARK 500 ASN A 284 -172.00 -63.87 REMARK 500 ASP A 287 -57.60 -132.75 REMARK 500 THR A 312 -142.38 -106.23 REMARK 500 LEU A 313 -3.53 78.58 REMARK 500 LYS A 314 43.94 -150.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 264 0.26 SIDE_CHAIN REMARK 500 ARG A 278 0.17 SIDE_CHAIN REMARK 500 ARG A 297 0.28 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL

DBREF 1DOQ A 247 315 UNP Q9Z9H6 RPOA_THETH 247 315

SEQRES 1 A 69 GLU GLN GLU GLU GLU LEU ASP LEU PRO LEU GLU GLU LEU SEQRES 2 A 69 GLY LEU SER THR ARG VAL LEU HIS SER LEU LYS GLU GLU SEQRES 3 A 69 GLY ILE GLU SER VAL ARG ALA LEU LEU ALA LEU ASN LEU SEQRES 4 A 69 LYS ASP LEU LYS ASN ILE PRO GLY ILE GLY GLU ARG SER SEQRES 5 A 69 LEU GLU GLU ILE LYS GLU ALA LEU GLU LYS LYS GLY PHE SEQRES 6 A 69 THR LEU LYS GLU

HELIX 1 1 PRO A 255 GLY A 260 1 6 HELIX 2 2 SER A 262 GLU A 272 1 11 HELIX 3 3 SER A 276 LEU A 283 1 8 HELIX 4 4 ASN A 284 LYS A 289 1 6 HELIX 5 5 GLY A 295 GLY A 310 1 16

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000