10 20 30 40 50 60 70 80 1DMS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER REDUCTASE 03-SEP-96 1DMS
TITLE STRUCTURE OF DMSO REDUCTASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DMSO REDUCTASE; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 STRAIN: 37B4; SOURCE 5 ATCC: DSM 938; SOURCE 6 COLLECTION: DSM 938
KEYWDS DMSO REDUCTASE, MOLYDOPTERIN
EXPDTA X-RAY DIFFRACTION
AUTHOR F.SCHNEIDER,J.LOEWE,R.HUBER,H.SCHINDELIN,C.KISKER, AUTHOR 2 J.KNAEBLEIN
REVDAT 2 24-FEB-09 1DMS 1 VERSN REVDAT 1 01-JUL-98 1DMS 0
JRNL AUTH F.SCHNEIDER,J.LOWE,R.HUBER,H.SCHINDELIN,C.KISKER, JRNL AUTH 2 J.KNABLEIN JRNL TITL CRYSTAL STRUCTURE OF DIMETHYL SULFOXIDE REDUCTASE JRNL TITL 2 FROM RHODOBACTER CAPSULATUS AT 1.88 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 263 53 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8890912 JRNL DOI 10.1006/JMBI.1996.0555
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 57394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 355 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1DMS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-94 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM V. 5.21-5.23 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 227189 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.90000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 171.90000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.60000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 ALA A 382 REMARK 465 THR A 383 REMARK 465 LYS A 384 REMARK 465 GLY A 385 REMARK 465 PRO A 386 REMARK 465 GLU A 387 REMARK 465 TRP A 388 REMARK 465 LEU A 389 REMARK 465 ALA A 390 REMARK 465 ALA A 391 REMARK 465 SER A 392
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 35 O HOH A 804 6555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 37 81.93 -162.64 REMARK 500 SER A 113 52.12 35.98 REMARK 500 LYS A 117 -134.11 39.08 REMARK 500 GLU A 163 -43.36 67.33 REMARK 500 ARG A 326 47.20 -94.91 REMARK 500 SER A 357 26.37 -142.04 REMARK 500 PHE A 415 115.76 -161.69 REMARK 500 ASP A 441 72.18 54.92 REMARK 500 TYR A 506 -129.22 46.91 REMARK 500 THR A 573 -79.99 -100.74 REMARK 500 ASP A 587 89.65 -151.60 REMARK 500 CYS A 615 84.45 -150.95 REMARK 500 HIS A 649 -119.05 59.19 REMARK 500 LEU A 652 6.49 84.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 114 0.08 SIDE_CHAIN REMARK 500 TYR A 479 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 796 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH A 804 DISTANCE = 11.56 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MM4 A 784 MO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PGD A 782 S13 REMARK 620 2 PGD A 782 S12 81.1 REMARK 620 3 SER A 147 OG 87.7 159.0 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGD A 782 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGD A 783 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MM4 A 784
DBREF 1DMS A 1 781 UNP P72249 P72249 14 794
SEQRES 1 A 781 GLU ALA LEU ALA ASN GLY THR VAL MET SER GLY SER HIS SEQRES 2 A 781 TRP GLY VAL PHE THR ALA THR VAL GLU ASN GLY ARG ALA SEQRES 3 A 781 THR ALA PHE THR PRO TRP GLU LYS ASP PRO HIS PRO THR SEQRES 4 A 781 PRO MET LEU GLU GLY VAL LEU ASP SER ILE TYR SER PRO SEQRES 5 A 781 THR ARG ILE LYS TYR PRO MET VAL ARG ARG GLU PHE LEU SEQRES 6 A 781 GLU LYS GLY VAL ASN ALA ASP ARG SER THR ARG GLY ASN SEQRES 7 A 781 GLY ASP PHE VAL ARG VAL SER TRP ASP GLN ALA LEU ASP SEQRES 8 A 781 LEU VAL ALA ALA GLU VAL LYS ARG VAL GLU GLU THR TYR SEQRES 9 A 781 GLY PRO GLN GLY VAL PHE GLY GLY SER TYR GLY TRP LYS SEQRES 10 A 781 SER PRO GLY ARG LEU HIS ASN CYS THR THR LEU LEU ARG SEQRES 11 A 781 ARG MET LEU THR LEU ALA GLY GLY TYR VAL ASN GLY ALA SEQRES 12 A 781 GLY ASP TYR SER THR GLY ALA ALA GLN VAL ILE MET PRO SEQRES 13 A 781 HIS VAL VAL GLY THR LEU GLU VAL TYR GLU GLN GLN THR SEQRES 14 A 781 ALA TRP PRO VAL LEU ALA GLU ASN THR GLU VAL MET VAL SEQRES 15 A 781 PHE TRP ALA ALA ASP PRO ILE LYS THR SER GLN ILE GLY SEQRES 16 A 781 TRP VAL ILE PRO GLU HIS GLY ALA TYR PRO GLY LEU GLU SEQRES 17 A 781 ALA LEU LYS ALA LYS GLY THR LYS VAL ILE VAL ILE ASP SEQRES 18 A 781 PRO VAL ARG THR LYS THR VAL GLU PHE PHE GLY ALA ASP SEQRES 19 A 781 HIS VAL THR PRO LYS PRO GLN THR ASP VAL ALA ILE MET SEQRES 20 A 781 LEU GLY MET ALA HIS THR LEU VAL ALA GLU ASP LEU TYR SEQRES 21 A 781 ASP LYS ASP PHE ILE ALA ASN TYR THR SER GLY PHE ASP SEQRES 22 A 781 LYS PHE LEU PRO TYR LEU MET GLY GLU THR ASP SER THR SEQRES 23 A 781 PRO LYS THR ALA GLU TRP ALA SER ASP ILE SER GLY VAL SEQRES 24 A 781 PRO ALA GLU THR ILE LYS GLU LEU ALA ARG LEU PHE LYS SEQRES 25 A 781 SER LYS ARG THR MET LEU ALA ALA GLY TRP SER MET GLN SEQRES 26 A 781 ARG MET HIS HIS GLY GLU GLN ALA HIS TRP MET LEU VAL SEQRES 27 A 781 THR LEU ALA SER MET LEU GLY GLN ILE GLY LEU PRO GLY SEQRES 28 A 781 GLY GLY PHE GLY LEU SER TYR HIS TYR SER GLY GLY GLY SEQRES 29 A 781 THR PRO SER SER SER GLY PRO ALA LEU SER GLY ILE THR SEQRES 30 A 781 ASP GLY GLY ALA ALA THR LYS GLY PRO GLU TRP LEU ALA SEQRES 31 A 781 ALA SER GLY ALA SER VAL ILE PRO VAL ALA ARG VAL VAL SEQRES 32 A 781 ASP MET LEU GLU ASN PRO GLY ALA GLU PHE ASP PHE ASN SEQRES 33 A 781 GLY THR ARG SER LYS PHE PRO ASP VAL LYS MET ALA TYR SEQRES 34 A 781 TRP VAL GLY GLY ASN PRO PHE VAL HIS HIS GLN ASP ARG SEQRES 35 A 781 ASN ARG MET VAL LYS ALA TRP GLU LYS LEU GLU THR PHE SEQRES 36 A 781 ILE VAL HIS ASP PHE GLN TRP THR PRO THR ALA ARG HIS SEQRES 37 A 781 ALA ASP ILE VAL LEU PRO ALA THR THR SER TYR GLU ARG SEQRES 38 A 781 ASN ASP ILE GLU THR ILE GLY ASP TYR SER ASN THR GLY SEQRES 39 A 781 ILE LEU ALA MET LYS LYS ILE VAL GLU PRO LEU TYR GLU SEQRES 40 A 781 ALA ARG SER ASP TYR ASP ILE PHE ALA ALA VAL ALA GLU SEQRES 41 A 781 ARG LEU GLY LYS GLY LYS GLU PHE THR GLU GLY LYS ASP SEQRES 42 A 781 GLU MET GLY TRP ILE LYS SER PHE TYR ASP ASP ALA ALA SEQRES 43 A 781 LYS GLN GLY LYS ALA GLY GLY VAL GLU MET PRO ALA PHE SEQRES 44 A 781 ASP ALA PHE TRP ALA GLU GLY ILE VAL GLU PHE PRO VAL SEQRES 45 A 781 THR ASP GLY ALA ASP PHE VAL ARG TYR ALA SER PHE ARG SEQRES 46 A 781 GLU ASP PRO LEU LEU ASN PRO LEU GLY THR PRO THR GLY SEQRES 47 A 781 LEU ILE GLU ILE TYR SER LYS ASN ILE GLU LYS MET GLY SEQRES 48 A 781 TYR ASP ASP CYS PRO ALA HIS PRO THR TRP MET GLU PRO SEQRES 49 A 781 LEU GLU ARG LEU ASP GLY PRO GLY ALA LYS TYR PRO LEU SEQRES 50 A 781 HIS ILE ALA ALA SER HIS PRO PHE ASN ARG LEU HIS SER SEQRES 51 A 781 GLN LEU ASN GLY THR VAL LEU ARG GLU GLY TYR ALA VAL SEQRES 52 A 781 GLN GLY HIS GLU PRO CYS LEU MET HIS PRO ASP ASP ALA SEQRES 53 A 781 ALA ALA ARG GLY ILE ALA ASP GLY ASP VAL VAL ARG VAL SEQRES 54 A 781 HIS ASN ASP ARG GLY GLN ILE LEU THR GLY VAL LYS VAL SEQRES 55 A 781 THR ASP ALA VAL MET LYS GLY VAL ILE GLN ILE TYR GLU SEQRES 56 A 781 GLY GLY TRP TYR ASP PRO SER ASP VAL THR GLU ALA GLY SEQRES 57 A 781 THR LEU ASP LYS TYR GLY ASP VAL ASN VAL LEU SER ALA SEQRES 58 A 781 ASP ILE GLY THR SER LYS LEU ALA GLN GLY ASN CYS GLY SEQRES 59 A 781 GLN THR VAL LEU ALA GLU VAL GLU LYS TYR THR GLY PRO SEQRES 60 A 781 ALA VAL THR LEU THR GLY PHE VAL ALA PRO LYS ALA ALA SEQRES 61 A 781 GLU
HET PGD A 782 47 HET PGD A 783 47 HET MM4 A 784 3
HETNAM PGD 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8- HETNAM 2 PGD OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE HETNAM 3 PGD DINUCLEOTIDE HETNAM MM4 MOLYBDENUM (IV) OXIDE
FORMUL 2 PGD 2(C20 H24 N10 O13 P2 S2) FORMUL 4 MM4 MO O2 FORMUL 5 HOH *355(H2 O)
HELIX 1 1 LEU A 42 TYR A 50 5 9 HELIX 2 2 ARG A 62 LYS A 67 1 6 HELIX 3 3 ARG A 73 THR A 75 5 3 HELIX 4 4 TRP A 86 TYR A 104 1 19 HELIX 5 5 CYS A 125 ALA A 136 1 12 HELIX 6 6 ALA A 151 VAL A 158 1 8 HELIX 7 7 TRP A 171 ASN A 177 1 7 HELIX 8 8 PRO A 188 SER A 192 1 5 HELIX 9 9 ALA A 203 LYS A 213 1 11 HELIX 10 10 LYS A 226 PHE A 231 1 6 HELIX 11 11 ASP A 243 ALA A 256 1 14 HELIX 12 12 LYS A 262 TYR A 268 1 7 HELIX 13 13 PHE A 272 LEU A 279 1 8 HELIX 14 14 ALA A 290 SER A 297 1 8 HELIX 15 15 ALA A 301 PHE A 311 1 11 HELIX 16 16 SER A 323 GLN A 325 5 3 HELIX 17 17 GLU A 331 LEU A 344 5 14 HELIX 18 18 VAL A 399 ARG A 401 5 3 HELIX 19 19 VAL A 402 GLU A 407 1 6 HELIX 20 20 PRO A 435 HIS A 439 1 5 HELIX 21 21 ARG A 442 ALA A 448 1 7 HELIX 22 22 TRP A 449 LYS A 451 5 3 HELIX 23 23 PRO A 464 HIS A 468 1 5 HELIX 24 24 SER A 478 GLU A 480 5 3 HELIX 25 25 ASP A 511 LEU A 522 1 12 HELIX 26 26 GLY A 525 THR A 529 1 5 HELIX 27 27 GLU A 534 ALA A 551 1 18 HELIX 28 28 PHE A 559 GLU A 565 1 7 HELIX 29 29 GLY A 575 ASP A 577 5 3 HELIX 30 30 ALA A 582 GLU A 586 1 5 HELIX 31 31 LYS A 605 MET A 610 1 6 HELIX 32 32 VAL A 656 GLY A 660 5 5 HELIX 33 33 PRO A 673 ALA A 678 1 6 HELIX 34 34 ASP A 735 VAL A 738 5 4
SHEET 1 A 3 GLY A 6 SER A 12 0 SHEET 2 A 3 GLY A 15 GLU A 22 -1 N VAL A 21 O GLY A 6 SHEET 3 A 3 ARG A 25 PRO A 31 -1 N THR A 30 O THR A 18 SHEET 1 B 2 MET A 59 ARG A 61 0 SHEET 2 B 2 PHE A 81 ARG A 83 -1 N VAL A 82 O VAL A 60 SHEET 1 C 2 ASN A 141 ALA A 143 0 SHEET 2 C 2 VAL A 396 PRO A 398 1 N ILE A 397 O ASN A 141 SHEET 1 D 5 GLY A 353 GLY A 355 0 SHEET 2 D 5 THR A 316 ALA A 320 1 N LEU A 318 O GLY A 353 SHEET 3 D 5 VAL A 180 TRP A 184 1 N VAL A 180 O MET A 317 SHEET 4 D 5 LYS A 216 ILE A 220 1 N LYS A 216 O MET A 181 SHEET 5 D 5 ASP A 234 VAL A 236 1 N ASP A 234 O VAL A 219 SHEET 1 E 2 GLU A 412 PHE A 415 0 SHEET 2 E 2 THR A 418 LYS A 421 -1 N SER A 420 O PHE A 413 SHEET 1 F 3 MET A 427 VAL A 431 0 SHEET 2 F 3 THR A 454 ASP A 459 1 N THR A 454 O ALA A 428 SHEET 3 F 3 ILE A 471 PRO A 474 1 N ILE A 471 O VAL A 457 SHEET 1 G 3 ASP A 483 ILE A 487 0 SHEET 2 G 3 GLY A 494 MET A 498 -1 N MET A 498 O ASP A 483 SHEET 3 G 3 ILE A 567 GLU A 569 -1 N VAL A 568 O ILE A 495 SHEET 1 H 2 HIS A 638 ALA A 640 0 SHEET 2 H 2 VAL A 710 GLN A 712 1 N ILE A 711 O HIS A 638 SHEET 1 I 4 PRO A 668 MET A 671 0 SHEET 2 I 4 GLN A 695 VAL A 702 1 N GLY A 699 O CYS A 669 SHEET 3 I 4 VAL A 686 HIS A 690 -1 N VAL A 689 O ILE A 696 SHEET 4 I 4 GLU A 760 LYS A 763 -1 N GLU A 762 O ARG A 688
LINK S13 PGD A 782 MO MM4 A 784 1555 1555 2.57 LINK S12 PGD A 782 MO MM4 A 784 1555 1555 2.35 LINK MO MM4 A 784 OG SER A 147 1555 1555 1.96
SITE 1 AC1 34 TYR A 114 GLY A 115 TRP A 116 LYS A 117 SITE 2 AC1 34 SER A 118 TYR A 146 SER A 147 ARG A 326 SITE 3 AC1 34 GLY A 432 GLY A 433 ASN A 434 HIS A 438 SITE 4 AC1 34 GLN A 440 HIS A 458 ASP A 459 PHE A 460 SITE 5 AC1 34 THR A 463 ALA A 475 ARG A 481 ASP A 511 SITE 6 AC1 34 ALA A 641 HIS A 643 HIS A 649 SER A 650 SITE 7 AC1 34 GLN A 651 GLU A 715 ASN A 737 GLY A 754 SITE 8 AC1 34 GLN A 755 MM4 A 784 HOH A 979 HOH A 983 SITE 9 AC1 34 HOH A 997 HOH A1014 SITE 1 AC2 33 TRP A 116 SER A 147 ALA A 185 LYS A 190 SITE 2 AC2 33 THR A 191 GLN A 193 ILE A 220 ASP A 221 SITE 3 AC2 33 PRO A 222 VAL A 223 THR A 225 PRO A 240 SITE 4 AC2 33 GLN A 241 ASP A 243 GLY A 321 TRP A 322 SITE 5 AC2 33 SER A 323 ARG A 326 MET A 327 HIS A 359 SITE 6 AC2 33 SER A 642 HIS A 643 PRO A 644 PHE A 645 SITE 7 AC2 33 ARG A 647 LEU A 648 HIS A 649 GLN A 755 SITE 8 AC2 33 MM4 A 784 HOH A 865 HOH A 866 HOH A 869 SITE 9 AC2 33 HOH A 984 SITE 1 AC3 7 TYR A 114 TRP A 116 ASP A 145 TYR A 146 SITE 2 AC3 7 SER A 147 PGD A 782 PGD A 783
CRYST1 80.700 80.700 229.200 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012392 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012392 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004363 0.00000